Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48501 * 109.47099 * 240.00032 * 3 2 1 5 5 H 1.48501 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47353 * 119.99941 * 3 2 1 7 7 C 1.38807 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99930 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00069 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47073 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47246 * 295.00434 * 11 10 9 13 13 N 1.46511 * 109.46794 * 55.00109 * 11 10 9 14 14 C 1.34771 * 119.99478 * 204.99995 * 13 11 10 15 15 O 1.21281 * 120.00572 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00042 * 180.02562 * 14 13 11 17 17 C 1.56273 * 116.74709 * 62.39588 * 16 14 13 18 18 C 1.54658 * 103.25770 * 158.87734 * 17 16 14 19 19 N 1.49517 * 105.28624 * 0.72552 * 18 17 16 20 20 C 1.49518 * 105.92347 * 71.25735 * 19 18 17 21 21 C 1.54971 * 105.24603 * 288.72760 * 20 19 18 22 22 C 1.50469 * 102.03330 * 324.85028 * 19 18 17 23 23 C 1.52994 * 109.46949 * 174.99590 * 11 10 9 24 24 C 1.53003 * 117.50399 * 248.74788 * 23 11 10 25 25 C 1.53005 * 117.49854 * 180.08587 * 23 11 10 26 26 H 0.96996 * 120.00380 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00089 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.46886 * 59.99543 * 10 9 7 29 29 H 1.08998 * 109.46580 * 299.99581 * 10 9 7 30 30 H 0.96991 * 120.00352 * 24.99585 * 13 11 10 31 31 H 1.09003 * 110.59470 * 40.45864 * 17 16 14 32 32 H 1.08999 * 110.71252 * 277.34998 * 17 16 14 33 33 H 1.09005 * 110.28096 * 241.77462 * 18 17 16 34 34 H 1.09000 * 110.35964 * 119.71806 * 18 17 16 35 35 H 1.09005 * 110.27582 * 47.69934 * 20 19 18 36 36 H 1.09002 * 110.27834 * 169.78521 * 20 19 18 37 37 H 1.09007 * 110.67639 * 240.92864 * 21 20 19 38 38 H 1.08997 * 110.70091 * 117.76864 * 21 20 19 39 39 H 1.09002 * 111.91007 * 171.59817 * 22 19 18 40 40 H 1.08995 * 111.90966 * 297.73752 * 22 19 18 41 41 H 1.08996 * 115.55071 * 34.42000 * 23 11 10 42 42 H 1.09002 * 117.49620 * 0.02562 * 24 23 11 43 43 H 1.08996 * 117.50132 * 145.02042 * 24 23 11 44 44 H 1.09000 * 117.50103 * 214.97891 * 25 23 11 45 45 H 1.08997 * 117.49854 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4981 -4.8135 0.9327 13 7 0.1441 -4.6763 -1.1300 14 6 -1.0803 -5.2371 -1.0781 15 8 -1.4205 -5.8609 -0.0952 16 6 -2.0264 -5.0902 -2.2418 17 6 -1.5705 -5.7108 -3.6016 18 6 -2.8986 -5.8860 -4.3745 19 7 -3.9593 -5.3639 -3.4591 20 6 -3.7801 -3.8799 -3.4279 21 6 -2.4766 -3.6435 -2.6238 22 6 -3.4363 -5.7714 -2.1083 23 6 1.8248 -6.1411 -0.1246 24 6 1.6663 -6.9263 -1.4282 25 6 1.0020 -7.4309 -0.1447 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6849 -3.7144 0.8905 29 1 2.6848 -3.7144 -0.8895 30 1 0.4161 -4.1777 -1.9162 31 1 -1.0890 -6.6754 -3.4405 32 1 -0.9038 -5.0306 -4.1316 33 1 -3.0728 -6.9398 -4.5924 34 1 -2.8788 -5.3079 -5.2984 35 1 -3.6759 -3.4906 -4.4407 36 1 -4.6248 -3.4078 -2.9260 37 1 -2.6779 -3.0544 -1.7290 38 1 -1.7238 -3.1575 -3.2444 39 1 -4.0223 -5.3383 -1.2977 40 1 -3.3573 -6.8543 -2.0126 41 1 2.7974 -6.1722 0.3665 42 1 1.0203 -6.5013 -2.1964 43 1 2.5345 -7.4743 -1.7944 44 1 1.4335 -8.3107 0.3328 45 1 -0.0813 -7.3381 -0.0678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699591730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = 28.935413 kcal Electronic energy + Delta-G solvation = -25011.590446 eV Core-core repulsion = 21644.670492 eV Total energy + Delta-G solvation = -3366.919954 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16848 -39.41762 -36.95221 -34.92452 -33.32200 -31.46349 -30.72673 -30.42135 -28.14508 -28.00243 -24.15415 -22.73496 -22.56176 -22.24619 -21.49624 -20.78275 -19.75037 -19.15657 -17.33179 -16.75727 -16.23430 -15.93086 -15.72548 -15.40178 -14.94863 -14.36040 -14.06434 -13.43992 -13.39781 -13.21594 -12.90659 -12.86166 -12.69399 -12.23521 -12.10785 -11.78427 -11.67112 -11.49150 -11.40716 -11.31357 -11.14090 -10.92629 -10.83787 -10.70042 -10.29611 -10.27288 -10.13567 -9.82978 -9.61504 -9.50097 -9.13806 -8.94827 -8.66476 -7.00188 -5.82026 -3.11802 2.76736 3.36326 3.40246 3.45005 3.45629 3.77671 4.03786 4.40900 4.46905 4.52737 4.75985 4.88129 4.97129 4.98824 5.04143 5.16079 5.18390 5.19061 5.42948 5.49008 5.50493 5.54866 5.60629 5.66569 5.70832 5.76347 5.82255 5.85270 5.91191 5.96565 5.99153 6.00769 6.12876 6.20819 6.29569 6.41880 6.45970 6.49898 6.55702 6.66279 6.90987 7.63918 7.82192 8.35758 8.48937 9.47740 10.03013 10.38761 11.40112 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.005427 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.280789 B = 5157.919805 C = 6699.407187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.091 0.909 13 N -0.702 5.702 14 C 0.555 3.445 15 O -0.539 6.539 16 C -0.129 4.129 17 C -0.136 4.136 18 C 0.014 3.986 19 N -0.468 5.468 20 C 0.014 3.986 21 C -0.134 4.134 22 C 0.040 3.960 23 C -0.160 4.160 24 C -0.178 4.178 25 C -0.187 4.187 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.034 0.966 29 H 0.026 0.974 30 H 0.404 0.596 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 -13.396 -8.343 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.109 0.891 13 N -0.352 5.352 14 C 0.340 3.660 15 O -0.416 6.416 16 C -0.134 4.134 17 C -0.175 4.175 18 C -0.115 4.115 19 N -0.188 5.188 20 C -0.115 4.115 21 C -0.173 4.173 22 C -0.089 4.089 23 C -0.180 4.180 24 C -0.215 4.215 25 C -0.224 4.224 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.239 0.761 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.851 -13.912 -7.845 16.429 hybrid contribution 1.403 1.588 -0.163 2.125 sum -2.448 -12.324 -8.008 14.899 Atomic orbital electron populations 1.69650 1.05071 1.25800 1.57362 1.24731 0.95508 0.97652 1.02788 0.86272 0.78528 0.83526 0.77847 1.21296 1.21696 1.21256 1.19161 0.90994 0.84053 1.43225 0.91222 1.42326 1.05954 0.99677 1.89602 1.20909 0.93048 0.85129 0.98931 1.20766 0.90194 0.92814 0.89954 0.89121 1.45943 1.14358 1.54139 1.20719 1.19298 0.81493 0.78394 0.86825 1.90620 1.76128 1.41670 1.33228 1.23757 0.96882 0.98664 0.94091 1.23229 0.98799 1.01441 0.94026 1.23581 0.89441 1.01687 0.96806 1.69982 1.37760 1.06435 1.04601 1.23666 0.97245 0.89919 1.00699 1.23252 0.98112 0.94263 1.01646 1.24310 0.91119 1.00805 0.92670 1.22697 1.00789 0.92520 1.01978 1.22894 1.02938 1.04042 0.91645 1.23334 1.01549 0.96769 1.00705 0.93449 0.78022 0.94839 0.95655 0.76073 0.90904 0.90436 0.89918 0.90368 0.90390 0.89650 0.89928 0.90228 0.88998 0.89267 0.87294 0.89050 0.89561 0.89765 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.06 55.49 0.72 -26.56 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.62 5.43 -59.91 -0.33 -17.95 16 10 C 0.15 2.82 5.80 -4.04 -0.02 2.80 16 11 C 0.17 2.77 2.59 -67.93 -0.18 2.59 16 12 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 13 N -0.70 -10.80 3.05 -53.81 -0.16 -10.96 16 14 C 0.55 8.65 6.16 -10.99 -0.07 8.58 16 15 O -0.54 -9.86 13.59 5.56 0.08 -9.79 16 16 C -0.13 -1.66 1.39 -149.91 -0.21 -1.87 16 17 C -0.14 -1.41 6.02 -24.10 -0.15 -1.55 16 18 C 0.01 0.14 6.61 -1.49 -0.01 0.13 16 19 N -0.47 -5.44 6.94 -221.85 -1.54 -6.98 16 20 C 0.01 0.15 6.62 -1.32 -0.01 0.15 16 21 C -0.13 -1.74 6.07 -23.95 -0.15 -1.89 16 22 C 0.04 0.51 6.06 0.44 0.00 0.51 16 23 C -0.16 -2.24 5.70 -90.62 -0.52 -2.76 16 24 C -0.18 -2.23 9.74 -26.69 -0.26 -2.49 16 25 C -0.19 -2.55 9.82 -26.69 -0.26 -2.81 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.39 9.92 7.33 -40.82 -0.30 9.62 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.40 6.09 8.60 -40.82 -0.35 5.74 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.76 7.82 -51.93 -0.41 0.35 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.68 7.69 -51.93 -0.40 0.29 16 35 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.03 7.82 -51.93 -0.41 0.62 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.11 1.42 8.11 -51.93 -0.42 0.99 16 42 H 0.09 1.15 6.67 -51.93 -0.35 0.80 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.12 1.84 5.01 -51.93 -0.26 1.58 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -29.81 352.93 -10.46 -40.27 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -7.46 Total: 15.50 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.07 Total: -5.73 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -1.30 Total: -62.46 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.81 -10.46 -40.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699591730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.206 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds