Wall clock time and date at job start Tue Mar 31 2020 06:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48501 * 109.47099 * 240.00032 * 3 2 1 5 5 H 1.48501 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47353 * 119.99941 * 3 2 1 7 7 C 1.38807 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99930 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00069 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47073 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47246 * 295.00434 * 11 10 9 13 13 N 1.46511 * 109.46794 * 55.00109 * 11 10 9 14 14 C 1.34771 * 119.99478 * 204.99995 * 13 11 10 15 15 O 1.21281 * 120.00572 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00042 * 180.02562 * 14 13 11 17 17 C 1.56273 * 116.74709 * 62.39588 * 16 14 13 18 18 C 1.54658 * 103.25770 * 158.87734 * 17 16 14 19 19 N 1.49517 * 105.28624 * 0.72552 * 18 17 16 20 20 C 1.49518 * 105.92347 * 71.25735 * 19 18 17 21 21 C 1.54971 * 105.24603 * 288.72760 * 20 19 18 22 22 C 1.50469 * 102.03330 * 324.85028 * 19 18 17 23 23 C 1.52994 * 109.46949 * 174.99590 * 11 10 9 24 24 C 1.53003 * 117.50399 * 248.74788 * 23 11 10 25 25 C 1.53005 * 117.49854 * 180.08587 * 23 11 10 26 26 H 0.96996 * 120.00380 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00089 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.46886 * 59.99543 * 10 9 7 29 29 H 1.08998 * 109.46580 * 299.99581 * 10 9 7 30 30 H 0.96991 * 120.00352 * 24.99585 * 13 11 10 31 31 H 1.09003 * 110.59470 * 40.45864 * 17 16 14 32 32 H 1.08999 * 110.71252 * 277.34998 * 17 16 14 33 33 H 1.09005 * 110.28096 * 241.77462 * 18 17 16 34 34 H 1.09000 * 110.35964 * 119.71806 * 18 17 16 35 35 H 1.09005 * 110.27582 * 47.69934 * 20 19 18 36 36 H 1.09002 * 110.27834 * 169.78521 * 20 19 18 37 37 H 1.09007 * 110.67639 * 240.92864 * 21 20 19 38 38 H 1.08997 * 110.70091 * 117.76864 * 21 20 19 39 39 H 1.09002 * 111.91007 * 171.59817 * 22 19 18 40 40 H 1.08995 * 111.90966 * 297.73752 * 22 19 18 41 41 H 1.08996 * 115.55071 * 34.42000 * 23 11 10 42 42 H 1.09002 * 117.49620 * 0.02562 * 24 23 11 43 43 H 1.08996 * 117.50132 * 145.02042 * 24 23 11 44 44 H 1.09000 * 117.50103 * 214.97891 * 25 23 11 45 45 H 1.08997 * 117.49854 * 359.97438 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.4981 -4.8135 0.9327 13 7 0.1441 -4.6763 -1.1300 14 6 -1.0803 -5.2371 -1.0781 15 8 -1.4205 -5.8609 -0.0952 16 6 -2.0264 -5.0902 -2.2418 17 6 -1.5705 -5.7108 -3.6016 18 6 -2.8986 -5.8860 -4.3745 19 7 -3.9593 -5.3639 -3.4591 20 6 -3.7801 -3.8799 -3.4279 21 6 -2.4766 -3.6435 -2.6238 22 6 -3.4363 -5.7714 -2.1083 23 6 1.8248 -6.1411 -0.1246 24 6 1.6663 -6.9263 -1.4282 25 6 1.0020 -7.4309 -0.1447 26 1 -0.4850 0.8400 0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6849 -3.7144 0.8905 29 1 2.6848 -3.7144 -0.8895 30 1 0.4161 -4.1777 -1.9162 31 1 -1.0890 -6.6754 -3.4405 32 1 -0.9038 -5.0306 -4.1316 33 1 -3.0728 -6.9398 -4.5924 34 1 -2.8788 -5.3079 -5.2984 35 1 -3.6759 -3.4906 -4.4407 36 1 -4.6248 -3.4078 -2.9260 37 1 -2.6779 -3.0544 -1.7290 38 1 -1.7238 -3.1575 -3.2444 39 1 -4.0223 -5.3383 -1.2977 40 1 -3.3573 -6.8543 -2.0126 41 1 2.7974 -6.1722 0.3665 42 1 1.0203 -6.5013 -2.1964 43 1 2.5345 -7.4743 -1.7944 44 1 1.4335 -8.3107 0.3328 45 1 -0.0813 -7.3381 -0.0678 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699591730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:51 Heat of formation + Delta-G solvation = 8.113838 kcal Electronic energy + Delta-G solvation = -25012.493337 eV Core-core repulsion = 21644.670492 eV Total energy + Delta-G solvation = -3367.822846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.21703 -40.60857 -38.22482 -36.55451 -34.83052 -33.15951 -31.67719 -31.62112 -29.61034 -29.07395 -26.00084 -23.98476 -23.52195 -23.37024 -22.92506 -21.73795 -20.99318 -20.33986 -19.20494 -17.92164 -17.37587 -17.26069 -16.81058 -16.65534 -16.30817 -15.83265 -15.31166 -15.14036 -14.98422 -14.39948 -14.31212 -13.87644 -13.78466 -13.59189 -13.15662 -13.11679 -12.85693 -12.72644 -12.70917 -12.68773 -12.40229 -12.36478 -12.16856 -12.13393 -11.84230 -11.66396 -11.27741 -11.24078 -10.98186 -10.86779 -10.71597 -10.07201 -9.97391 -9.01454 -7.94092 -5.23740 1.48237 1.50459 1.53020 1.56531 2.14066 2.55516 2.81409 2.94839 3.39630 3.43453 3.47349 3.61356 3.76824 3.91482 3.99796 4.06814 4.09226 4.14294 4.18173 4.30150 4.40839 4.48417 4.50121 4.52645 4.61850 4.66738 4.78582 4.83433 4.83687 4.88266 4.92673 4.94356 5.01952 5.05514 5.13581 5.14346 5.26692 5.38696 5.47564 5.50035 5.57212 5.66946 6.25939 6.55223 7.22994 7.33781 8.06308 8.30893 9.28347 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.005427 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.280789 B = 5157.919805 C = 6699.407187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.741 5.741 10 C 0.151 3.849 11 C 0.178 3.822 12 H 0.059 0.941 13 N -0.697 5.697 14 C 0.552 3.448 15 O -0.570 6.570 16 C -0.132 4.132 17 C -0.126 4.126 18 C 0.016 3.984 19 N -0.471 5.471 20 C 0.019 3.981 21 C -0.131 4.131 22 C 0.041 3.959 23 C -0.169 4.169 24 C -0.159 4.159 25 C -0.189 4.189 26 H 0.250 0.750 27 H 0.374 0.626 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.407 0.593 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 -14.318 -10.254 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.208 1.208 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.073 3.927 12 H 0.077 0.923 13 N -0.346 5.346 14 C 0.339 3.661 15 O -0.450 6.450 16 C -0.137 4.137 17 C -0.165 4.165 18 C -0.113 4.113 19 N -0.190 5.190 20 C -0.110 4.110 21 C -0.170 4.170 22 C -0.089 4.089 23 C -0.188 4.188 24 C -0.196 4.196 25 C -0.226 4.226 26 H 0.059 0.941 27 H 0.206 0.794 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.243 0.757 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.141 0.859 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.440 -14.862 -9.771 17.953 hybrid contribution 0.989 1.822 0.481 2.128 sum -1.452 -13.040 -9.290 16.076 Atomic orbital electron populations 1.69815 1.06536 1.26001 1.59235 1.25509 0.96287 1.00898 1.03582 0.85248 0.77176 0.79355 0.78150 1.20144 1.22480 1.20767 1.19570 0.91532 0.85112 1.41502 0.90444 1.42487 1.05592 1.00833 1.89539 1.21021 0.93359 0.83907 0.99329 1.20492 0.89623 0.93493 0.89132 0.92313 1.45879 1.14364 1.54038 1.20360 1.19739 0.81571 0.77613 0.87173 1.90608 1.76636 1.43086 1.34640 1.23686 0.96573 0.98853 0.94544 1.23210 0.99479 1.01662 0.92117 1.23684 0.88099 1.02770 0.96742 1.69977 1.38561 1.06384 1.04120 1.23666 0.95942 0.90046 1.01361 1.23198 0.99309 0.93917 1.00553 1.24250 0.90780 1.00783 0.93055 1.22613 1.01070 0.91101 1.04057 1.22980 1.03234 1.02642 0.90762 1.23269 1.00258 0.97016 1.02074 0.94142 0.79387 0.94652 0.94199 0.75719 0.90302 0.89362 0.88636 0.88606 0.88365 0.90014 0.93220 0.89976 0.90727 0.88967 0.85872 0.89104 0.87199 0.88046 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.74 13.06 21.65 0.28 -57.46 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.25 -13.20 9.99 84.03 0.84 -12.36 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -36.06 5.43 -343.45 -1.87 -37.93 16 10 C 0.15 5.67 5.80 86.38 0.50 6.18 16 11 C 0.18 5.90 2.59 44.99 0.12 6.02 16 12 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 13 N -0.70 -21.56 3.05 -442.54 -1.35 -22.91 16 14 C 0.55 17.58 6.16 87.66 0.54 18.12 16 15 O -0.57 -21.69 13.59 -3.03 -0.04 -21.73 16 16 C -0.13 -3.37 1.39 -49.20 -0.07 -3.44 16 17 C -0.13 -2.34 6.02 32.30 0.19 -2.15 16 18 C 0.02 0.26 6.61 86.36 0.57 0.83 16 19 N -0.47 -10.28 6.94 -855.81 -5.94 -16.22 16 20 C 0.02 0.41 6.62 86.47 0.57 0.98 16 21 C -0.13 -3.44 6.07 32.40 0.20 -3.25 16 22 C 0.04 1.03 6.06 87.06 0.53 1.56 16 23 C -0.17 -4.49 5.70 -10.79 -0.06 -4.55 16 24 C -0.16 -3.58 9.74 30.62 0.30 -3.28 16 25 C -0.19 -4.91 9.82 30.62 0.30 -4.61 16 26 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.37 19.79 7.33 -92.71 -0.68 19.11 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.41 12.11 8.60 -92.72 -0.80 11.32 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.48 7.82 -2.39 -0.02 1.46 16 33 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.10 1.32 7.69 -2.39 -0.02 1.31 16 35 H 0.10 1.76 7.69 -2.38 -0.02 1.75 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.08 2.09 7.82 -2.39 -0.02 2.07 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.12 2.93 8.11 -2.39 -0.02 2.91 16 42 H 0.09 2.06 6.67 -2.39 -0.02 2.05 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.09 2.93 5.01 -2.39 -0.01 2.92 16 Total: -1.00 -64.55 352.93 -2.38 -66.93 By element: Atomic # 1 Polarization: 46.10 SS G_CDS: -0.48 Total: 45.62 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.00 Total: -3.40 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -8.87 Total: -134.51 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.55 -2.38 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699591730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.043 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds