Wall clock time and date at job start Tue Mar 31 2020 06:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99850 * 2 1 4 4 H 1.48492 * 109.47145 * 269.99428 * 3 2 1 5 5 H 1.48495 * 109.47202 * 29.99998 * 3 2 1 6 6 H 1.48503 * 109.46993 * 149.99854 * 3 2 1 7 7 C 1.38812 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99373 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00329 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00105 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47039 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47197 * 64.99688 * 11 10 9 13 13 N 1.46511 * 109.46774 * 304.99632 * 11 10 9 14 14 C 1.34771 * 119.99478 * 155.00377 * 13 11 10 15 15 O 1.21281 * 120.00572 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00042 * 180.02562 * 14 13 11 17 17 C 1.56273 * 116.74709 * 62.39588 * 16 14 13 18 18 C 1.54658 * 103.25770 * 158.87734 * 17 16 14 19 19 N 1.49517 * 105.28624 * 0.72552 * 18 17 16 20 20 C 1.49518 * 105.92347 * 71.25735 * 19 18 17 21 21 C 1.54971 * 105.24603 * 288.72760 * 20 19 18 22 22 C 1.50469 * 102.03330 * 324.85028 * 19 18 17 23 23 C 1.53000 * 109.46828 * 185.00067 * 11 10 9 24 24 C 1.52994 * 117.49519 * 248.74244 * 23 11 10 25 25 C 1.53000 * 117.49506 * 180.08759 * 23 11 10 26 26 H 0.97001 * 119.99800 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99854 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47064 * 59.99559 * 10 9 7 29 29 H 1.08995 * 109.46711 * 299.99521 * 10 9 7 30 30 H 0.96991 * 120.00352 * 334.99967 * 13 11 10 31 31 H 1.09003 * 110.59470 * 40.45864 * 17 16 14 32 32 H 1.08999 * 110.85264 * 277.41542 * 17 16 14 33 33 H 1.09005 * 110.28096 * 241.77462 * 18 17 16 34 34 H 1.09000 * 110.35964 * 119.71806 * 18 17 16 35 35 H 1.09005 * 110.27582 * 47.69934 * 20 19 18 36 36 H 1.09002 * 110.27834 * 169.78521 * 20 19 18 37 37 H 1.09007 * 110.67639 * 240.92864 * 21 20 19 38 38 H 1.08997 * 110.70091 * 117.76864 * 21 20 19 39 39 H 1.09002 * 111.91007 * 171.59817 * 22 19 18 40 40 H 1.08995 * 111.90966 * 297.73752 * 22 19 18 41 41 H 1.08992 * 115.55082 * 34.41663 * 23 11 10 42 42 H 1.09003 * 117.50018 * 0.02562 * 24 23 11 43 43 H 1.09001 * 117.49692 * 145.02170 * 24 23 11 44 44 H 1.09003 * 117.49649 * 214.98047 * 25 23 11 45 45 H 1.09002 * 117.50473 * 359.96879 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8942 -1.6978 0.9324 13 7 5.9517 -1.3231 -1.1305 14 6 7.0496 -0.5432 -1.0792 15 8 7.7598 -0.5596 -0.0962 16 6 7.3942 0.3502 -2.2428 17 6 6.3619 1.4671 -2.6019 18 6 7.2072 2.4889 -3.3978 19 7 8.5831 1.9061 -3.4505 20 6 8.4990 0.7394 -4.3818 21 6 7.6921 -0.3378 -3.6137 22 6 8.6892 1.2305 -2.1102 23 6 6.3803 -3.5109 -0.1247 24 6 7.1794 -3.9831 1.0916 25 6 7.9088 -3.4434 -0.1412 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0007 28 1 3.8491 -3.0422 -0.8891 29 1 3.8485 -3.0425 0.8908 30 1 5.3836 -1.3097 -1.9165 31 1 5.9594 1.9225 -1.6970 32 1 5.5580 1.0681 -3.2205 33 1 7.2231 3.4492 -2.8822 34 1 6.8085 2.6080 -4.4052 35 1 7.9775 1.0227 -5.2961 36 1 9.4975 0.3692 -4.6147 37 1 8.2904 -1.2377 -3.4705 38 1 6.7647 -0.5705 -4.1370 39 1 9.5894 0.6208 -2.0322 40 1 8.6144 1.9429 -1.2886 41 1 5.9035 -4.2733 -0.7405 42 1 7.1605 -3.3539 1.9814 43 1 7.2286 -5.0563 1.2756 44 1 8.4375 -4.1618 -0.7678 45 1 8.3701 -2.4589 -0.0631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699591731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:53 Heat of formation + Delta-G solvation = 28.715125 kcal Electronic energy + Delta-G solvation = -24972.651456 eV Core-core repulsion = 21605.721949 eV Total energy + Delta-G solvation = -3366.929507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27561 -39.41327 -37.14862 -35.22778 -33.56519 -31.58234 -30.87042 -30.71123 -28.38702 -28.22241 -24.14049 -22.80053 -22.68954 -22.15207 -21.35757 -20.91313 -20.22907 -19.34835 -17.80532 -16.84424 -16.40013 -16.25885 -15.54633 -15.30677 -14.99347 -14.66842 -14.38770 -13.67277 -13.47300 -13.34334 -13.01535 -12.83589 -12.80769 -12.38066 -12.32401 -11.97983 -11.90369 -11.64454 -11.49929 -11.30278 -11.25661 -11.09516 -10.94204 -10.84939 -10.45947 -10.27131 -10.21562 -10.02398 -9.67349 -9.63272 -9.26639 -9.00105 -8.82099 -7.33383 -5.84437 -3.20862 2.60631 3.15680 3.29019 3.34403 3.39095 3.63659 4.00090 4.28937 4.31824 4.51489 4.62291 4.69786 4.82769 4.84203 4.90846 5.02876 5.06905 5.17366 5.26531 5.33039 5.36516 5.43332 5.44994 5.55218 5.57123 5.60932 5.68966 5.71512 5.77213 5.77342 5.79582 5.85758 5.93130 6.02277 6.24292 6.27189 6.34262 6.40038 6.42323 6.52187 6.76278 7.66392 7.90616 8.32333 8.34658 9.12470 9.84589 10.03918 11.33709 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.006634 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.925654 B = 4219.728492 C = 6080.779753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.755 5.755 10 C 0.153 3.847 11 C 0.164 3.836 12 H 0.088 0.912 13 N -0.706 5.706 14 C 0.554 3.446 15 O -0.538 6.538 16 C -0.130 4.130 17 C -0.140 4.140 18 C 0.014 3.986 19 N -0.467 5.467 20 C 0.013 3.987 21 C -0.134 4.134 22 C 0.041 3.959 23 C -0.163 4.163 24 C -0.170 4.170 25 C -0.185 4.185 26 H 0.260 0.740 27 H 0.362 0.638 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.404 0.596 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.919 -1.897 -7.803 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.401 5.401 10 C 0.025 3.975 11 C 0.059 3.941 12 H 0.106 0.894 13 N -0.355 5.355 14 C 0.339 3.661 15 O -0.416 6.416 16 C -0.135 4.135 17 C -0.179 4.179 18 C -0.115 4.115 19 N -0.187 5.187 20 C -0.116 4.116 21 C -0.173 4.173 22 C -0.089 4.089 23 C -0.182 4.182 24 C -0.208 4.208 25 C -0.222 4.222 26 H 0.070 0.930 27 H 0.195 0.805 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.702 -1.466 -7.303 20.130 hybrid contribution -0.658 0.500 -0.170 0.843 sum 18.044 -0.966 -7.473 19.554 Atomic orbital electron populations 1.69692 1.05062 1.25876 1.57267 1.24652 0.95188 0.97093 1.01901 0.86615 0.79372 0.85206 0.77808 1.20942 1.21612 1.20401 1.19039 0.80454 0.94778 1.43341 0.89087 1.42689 1.04086 1.02043 1.91258 1.20897 0.86892 0.89845 0.99844 1.20893 0.95247 0.88129 0.89789 0.89382 1.46010 1.26374 1.42332 1.20814 1.19315 0.80644 0.79297 0.86860 1.90621 1.50664 1.67082 1.33250 1.23774 0.98907 0.96490 0.94372 1.23268 0.97606 0.95516 1.01534 1.23602 0.88607 0.98486 1.00821 1.69984 1.24159 1.19958 1.04572 1.23659 1.00673 0.90563 0.96670 1.23246 1.01383 0.99100 0.93537 1.24316 0.95872 0.95820 0.92843 1.22616 0.93693 0.99041 1.02895 1.22901 1.04331 1.00797 0.92722 1.23255 0.93976 1.04024 1.00927 0.92980 0.80488 0.94856 0.93780 0.76132 0.90610 0.90066 0.89646 0.90169 0.90259 0.89748 0.90690 0.90337 0.89071 0.89051 0.87697 0.88742 0.89072 0.89838 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.97 55.49 0.78 -27.98 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.66 6.52 56.52 0.37 -6.30 16 7 C -0.25 -6.77 10.47 -15.06 -0.16 -6.92 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.17 5.24 -59.91 -0.31 -17.48 16 10 C 0.15 2.78 5.80 -4.04 -0.02 2.76 16 11 C 0.16 2.55 2.43 -67.92 -0.17 2.38 16 12 H 0.09 1.56 7.33 -51.93 -0.38 1.18 16 13 N -0.71 -10.21 4.50 -53.80 -0.24 -10.46 16 14 C 0.55 8.11 6.66 -10.99 -0.07 8.03 16 15 O -0.54 -9.27 13.59 5.56 0.08 -9.19 16 16 C -0.13 -1.56 1.39 -149.91 -0.21 -1.77 16 17 C -0.14 -1.68 6.02 -24.10 -0.15 -1.83 16 18 C 0.01 0.14 6.61 -1.49 -0.01 0.13 16 19 N -0.47 -5.05 6.94 -221.85 -1.54 -6.59 16 20 C 0.01 0.12 6.62 -1.32 -0.01 0.11 16 21 C -0.13 -1.28 6.07 -23.95 -0.15 -1.42 16 22 C 0.04 0.48 6.06 0.44 0.00 0.48 16 23 C -0.16 -2.15 5.36 -90.62 -0.49 -2.63 16 24 C -0.17 -2.11 10.18 -26.70 -0.27 -2.38 16 25 C -0.18 -2.37 9.74 -26.70 -0.26 -2.63 16 26 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 27 H 0.36 8.24 5.20 -40.82 -0.21 8.03 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.40 5.54 8.60 -40.82 -0.35 5.19 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.94 7.82 -51.93 -0.41 0.54 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 35 H 0.08 0.63 7.69 -51.93 -0.40 0.24 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.70 7.82 -51.93 -0.41 0.29 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.09 1.23 8.05 -51.93 -0.42 0.82 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.12 1.73 5.02 -51.93 -0.26 1.47 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -31.20 352.75 -10.17 -41.36 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -7.47 Total: 13.54 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.05 Total: -5.56 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -1.32 Total: -62.51 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.20 -10.17 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699591731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.079 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds