Wall clock time and date at job start Tue Mar 31 2020 06:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99850 * 2 1 4 4 H 1.48492 * 109.47145 * 269.99428 * 3 2 1 5 5 H 1.48495 * 109.47202 * 29.99998 * 3 2 1 6 6 H 1.48503 * 109.46993 * 149.99854 * 3 2 1 7 7 C 1.38812 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99373 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00329 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00105 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47039 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47197 * 64.99688 * 11 10 9 13 13 N 1.46511 * 109.46774 * 304.99632 * 11 10 9 14 14 C 1.34771 * 119.99478 * 155.00377 * 13 11 10 15 15 O 1.21281 * 120.00572 * 359.97438 * 14 13 11 16 16 C 1.50698 * 120.00042 * 180.02562 * 14 13 11 17 17 C 1.56273 * 116.74709 * 62.39588 * 16 14 13 18 18 C 1.54658 * 103.25770 * 158.87734 * 17 16 14 19 19 N 1.49517 * 105.28624 * 0.72552 * 18 17 16 20 20 C 1.49518 * 105.92347 * 71.25735 * 19 18 17 21 21 C 1.54971 * 105.24603 * 288.72760 * 20 19 18 22 22 C 1.50469 * 102.03330 * 324.85028 * 19 18 17 23 23 C 1.53000 * 109.46828 * 185.00067 * 11 10 9 24 24 C 1.52994 * 117.49519 * 248.74244 * 23 11 10 25 25 C 1.53000 * 117.49506 * 180.08759 * 23 11 10 26 26 H 0.97001 * 119.99800 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99854 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47064 * 59.99559 * 10 9 7 29 29 H 1.08995 * 109.46711 * 299.99521 * 10 9 7 30 30 H 0.96991 * 120.00352 * 334.99967 * 13 11 10 31 31 H 1.09003 * 110.59470 * 40.45864 * 17 16 14 32 32 H 1.08999 * 110.85264 * 277.41542 * 17 16 14 33 33 H 1.09005 * 110.28096 * 241.77462 * 18 17 16 34 34 H 1.09000 * 110.35964 * 119.71806 * 18 17 16 35 35 H 1.09005 * 110.27582 * 47.69934 * 20 19 18 36 36 H 1.09002 * 110.27834 * 169.78521 * 20 19 18 37 37 H 1.09007 * 110.67639 * 240.92864 * 21 20 19 38 38 H 1.08997 * 110.70091 * 117.76864 * 21 20 19 39 39 H 1.09002 * 111.91007 * 171.59817 * 22 19 18 40 40 H 1.08995 * 111.90966 * 297.73752 * 22 19 18 41 41 H 1.08992 * 115.55082 * 34.41663 * 23 11 10 42 42 H 1.09003 * 117.50018 * 0.02562 * 24 23 11 43 43 H 1.09001 * 117.49692 * 145.02170 * 24 23 11 44 44 H 1.09003 * 117.49649 * 214.98047 * 25 23 11 45 45 H 1.09002 * 117.50473 * 359.96879 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8942 -1.6978 0.9324 13 7 5.9517 -1.3231 -1.1305 14 6 7.0496 -0.5432 -1.0792 15 8 7.7598 -0.5596 -0.0962 16 6 7.3942 0.3502 -2.2428 17 6 6.3619 1.4671 -2.6019 18 6 7.2072 2.4889 -3.3978 19 7 8.5831 1.9061 -3.4505 20 6 8.4990 0.7394 -4.3818 21 6 7.6921 -0.3378 -3.6137 22 6 8.6892 1.2305 -2.1102 23 6 6.3803 -3.5109 -0.1247 24 6 7.1794 -3.9831 1.0916 25 6 7.9088 -3.4434 -0.1412 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0007 28 1 3.8491 -3.0422 -0.8891 29 1 3.8485 -3.0425 0.8908 30 1 5.3836 -1.3097 -1.9165 31 1 5.9594 1.9225 -1.6970 32 1 5.5580 1.0681 -3.2205 33 1 7.2231 3.4492 -2.8822 34 1 6.8085 2.6080 -4.4052 35 1 7.9775 1.0227 -5.2961 36 1 9.4975 0.3692 -4.6147 37 1 8.2904 -1.2377 -3.4705 38 1 6.7647 -0.5705 -4.1370 39 1 9.5894 0.6208 -2.0322 40 1 8.6144 1.9429 -1.2886 41 1 5.9035 -4.2733 -0.7405 42 1 7.1605 -3.3539 1.9814 43 1 7.2286 -5.0563 1.2756 44 1 8.4375 -4.1618 -0.7678 45 1 8.3701 -2.4589 -0.0631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699591731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:53 Heat of formation + Delta-G solvation = 5.766903 kcal Electronic energy + Delta-G solvation = -24973.646566 eV Core-core repulsion = 21605.721949 eV Total energy + Delta-G solvation = -3367.924616 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.20740 -40.53383 -38.33624 -36.78064 -35.06597 -33.41547 -31.84290 -31.66280 -29.84816 -29.10388 -25.86610 -23.99498 -23.49384 -23.14411 -22.95939 -21.76696 -21.41450 -20.48296 -19.68808 -17.92400 -17.55791 -17.18521 -16.72305 -16.41366 -16.32778 -16.06011 -15.82499 -15.10573 -14.79911 -14.67568 -14.34949 -13.98748 -13.81156 -13.75290 -13.55476 -13.19285 -12.92867 -12.77555 -12.72064 -12.60568 -12.45659 -12.37280 -12.18687 -12.15822 -11.87346 -11.70275 -11.30276 -11.26136 -11.13665 -11.05481 -10.75857 -10.09458 -10.03538 -9.35526 -8.06147 -5.39653 1.31205 1.34997 1.41193 1.48108 2.03338 2.42690 2.77789 2.97459 3.25450 3.37449 3.41600 3.45535 3.72238 3.82836 3.90070 4.01505 4.03431 4.10719 4.12549 4.23380 4.28019 4.38882 4.47054 4.49740 4.57843 4.61372 4.74655 4.80517 4.82255 4.86505 4.89482 4.91042 4.99742 5.02714 5.05525 5.09772 5.26995 5.33849 5.45049 5.50772 5.64393 5.73010 6.17148 6.51113 7.02994 7.18175 7.77944 7.96507 9.15129 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.006634 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.925654 B = 4219.728492 C = 6080.779753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.056 4.056 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.231 4.231 8 H 0.063 0.937 9 N -0.756 5.756 10 C 0.153 3.847 11 C 0.175 3.825 12 H 0.064 0.936 13 N -0.703 5.703 14 C 0.552 3.448 15 O -0.567 6.567 16 C -0.133 4.133 17 C -0.141 4.141 18 C 0.017 3.983 19 N -0.472 5.472 20 C 0.015 3.985 21 C -0.125 4.125 22 C 0.041 3.959 23 C -0.165 4.165 24 C -0.167 4.167 25 C -0.179 4.179 26 H 0.258 0.742 27 H 0.363 0.637 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.409 0.591 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.785 -2.190 -9.462 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.248 4.248 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.362 4.362 8 H 0.081 0.919 9 N -0.402 5.402 10 C 0.027 3.973 11 C 0.070 3.930 12 H 0.082 0.918 13 N -0.353 5.353 14 C 0.339 3.661 15 O -0.447 6.447 16 C -0.138 4.138 17 C -0.180 4.180 18 C -0.112 4.112 19 N -0.192 5.192 20 C -0.113 4.113 21 C -0.164 4.164 22 C -0.088 4.088 23 C -0.184 4.184 24 C -0.204 4.204 25 C -0.216 4.216 26 H 0.067 0.933 27 H 0.197 0.803 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.245 0.755 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.139 0.861 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.611 -1.784 -8.982 22.554 hybrid contribution -1.230 0.495 0.391 1.383 sum 19.381 -1.289 -8.591 21.239 Atomic orbital electron populations 1.69857 1.06904 1.26591 1.59614 1.25373 0.95936 1.00701 1.02764 0.85561 0.78004 0.80519 0.78575 1.19104 1.22512 1.19502 1.19027 0.82393 0.93610 1.41161 0.91854 1.42673 1.02576 1.03847 1.91055 1.21029 0.88264 0.87941 1.00113 1.20620 0.93509 0.89491 0.89340 0.91776 1.45975 1.26507 1.42262 1.20551 1.19738 0.80083 0.79112 0.87199 1.90613 1.51544 1.67956 1.34591 1.23707 0.99007 0.96416 0.94648 1.23284 0.97983 0.95838 1.00911 1.23623 0.88194 0.97863 1.01505 1.69978 1.24317 1.20716 1.04198 1.23746 1.01446 0.89557 0.96600 1.23236 1.02086 0.99212 0.91839 1.24258 0.95838 0.95539 0.93165 1.22537 0.93867 0.97991 1.04033 1.22989 1.03485 1.01928 0.92032 1.23193 0.93404 1.03521 1.01458 0.93295 0.80345 0.93515 0.94040 0.75526 0.92815 0.89447 0.89831 0.88359 0.88661 0.88730 0.90301 0.89255 0.88967 0.90509 0.86090 0.89943 0.86798 0.87801 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.57 13.97 21.65 0.30 -61.27 16 2 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 3 Si 0.95 45.11 27.74 68.60 1.90 47.01 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 6 H -0.27 -12.30 6.52 99.48 0.65 -11.65 16 7 C -0.23 -12.75 10.47 84.03 0.88 -11.87 16 8 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 9 N -0.76 -33.88 5.24 -343.46 -1.80 -35.68 16 10 C 0.15 5.42 5.80 86.38 0.50 5.92 16 11 C 0.18 5.28 2.43 44.99 0.11 5.39 16 12 H 0.06 2.27 7.33 -2.39 -0.02 2.25 16 13 N -0.70 -19.46 4.50 -442.52 -1.99 -21.45 16 14 C 0.55 15.68 6.66 87.66 0.58 16.26 16 15 O -0.57 -19.47 13.59 -3.03 -0.04 -19.51 16 16 C -0.13 -2.98 1.39 -49.20 -0.07 -3.05 16 17 C -0.14 -3.15 6.02 32.30 0.19 -2.96 16 18 C 0.02 0.32 6.61 86.36 0.57 0.89 16 19 N -0.47 -9.18 6.94 -855.81 -5.94 -15.12 16 20 C 0.02 0.22 6.62 86.47 0.57 0.80 16 21 C -0.12 -2.04 6.07 32.40 0.20 -1.84 16 22 C 0.04 0.93 6.06 87.06 0.53 1.45 16 23 C -0.16 -4.02 5.36 -10.80 -0.06 -4.08 16 24 C -0.17 -3.83 10.18 30.61 0.31 -3.51 16 25 C -0.18 -4.23 9.74 30.62 0.30 -3.93 16 26 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 27 H 0.36 16.15 5.20 -92.71 -0.48 15.66 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.41 10.49 8.60 -92.72 -0.80 9.69 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.82 7.82 -2.39 -0.02 1.80 16 33 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.10 1.50 7.69 -2.39 -0.02 1.48 16 35 H 0.09 1.15 7.69 -2.38 -0.02 1.13 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.09 1.29 7.82 -2.39 -0.02 1.27 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.12 2.61 8.11 -2.39 -0.02 2.59 16 42 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 43 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.09 2.74 5.02 -2.39 -0.01 2.72 16 Total: -1.00 -67.50 352.75 -2.83 -70.33 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: -0.35 Total: 38.97 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 5.09 Total: -3.29 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -9.43 Total: -133.52 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.04 Total: -19.51 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Total: -67.50 -2.83 -70.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699591731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.098 kcal (2) G-P(sol) polarization free energy of solvation -67.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds