Wall clock time and date at job start Tue Mar 31 2020 07:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99769 * 2 1 4 4 H 1.48507 * 109.46946 * 185.00589 * 3 2 1 5 5 H 1.48499 * 109.47177 * 305.00365 * 3 2 1 6 6 H 1.48497 * 109.47216 * 65.00601 * 3 2 1 7 7 C 1.38806 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00489 * 185.32962 * 7 2 1 9 9 N 1.36938 * 119.99803 * 5.33016 * 7 2 1 10 10 C 1.46506 * 119.99880 * 184.71751 * 9 7 2 11 11 C 1.52999 * 115.54917 * 294.86378 * 10 9 7 12 12 N 1.46502 * 109.47066 * 277.48984 * 11 10 9 13 13 C 1.34779 * 119.99788 * 184.94925 * 12 11 10 14 14 O 1.21284 * 120.00151 * 4.98324 * 13 12 11 15 15 C 1.50702 * 120.00060 * 184.97844 * 13 12 11 16 16 H 1.09003 * 109.67537 * 67.80985 * 15 13 12 17 17 C 1.53124 * 109.57474 * 307.49329 * 15 13 12 18 18 N 1.46943 * 109.35193 * 240.24962 * 17 15 13 19 19 C 1.46902 * 111.05865 * 61.95966 * 18 17 15 20 20 C 1.53141 * 109.37032 * 298.00615 * 19 18 17 21 21 C 1.53382 * 108.82509 * 359.97438 * 20 19 18 22 22 C 1.53397 * 108.59820 * 301.03982 * 21 20 19 23 23 C 1.46950 * 110.96895 * 297.91027 * 18 17 15 24 24 C 1.52995 * 117.50165 * 80.53539 * 10 9 7 25 25 C 1.53002 * 117.49733 * 149.19736 * 10 9 7 26 26 H 0.97005 * 120.00137 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00021 * 4.71575 * 9 7 2 28 28 H 1.09000 * 109.47306 * 157.48654 * 11 10 9 29 29 H 1.09007 * 109.47439 * 37.48515 * 11 10 9 30 30 H 0.96997 * 120.00296 * 4.94899 * 12 11 10 31 31 H 1.09000 * 109.48917 * 120.28820 * 17 15 13 32 32 H 1.08991 * 109.51439 * 0.22955 * 17 15 13 33 33 H 1.08997 * 109.48956 * 178.02774 * 19 18 17 34 34 H 1.09000 * 109.48580 * 57.96809 * 19 18 17 35 35 H 1.09001 * 109.57396 * 240.19549 * 20 19 18 36 36 H 1.08997 * 109.58385 * 119.79969 * 20 19 18 37 37 H 1.09002 * 110.11368 * 180.40386 * 21 20 19 38 38 H 1.09000 * 109.57233 * 178.80732 * 22 21 20 39 39 H 1.08999 * 109.57416 * 299.19429 * 22 21 20 40 40 H 1.08998 * 109.48581 * 182.05128 * 23 18 17 41 41 H 1.08996 * 109.49220 * 302.12742 * 23 18 17 42 42 H 1.08995 * 117.50043 * 215.00358 * 24 10 9 43 43 H 1.09005 * 117.49500 * 0.02562 * 24 10 9 44 44 H 1.08993 * 117.49866 * 359.97239 * 25 10 9 45 45 H 1.08995 * 117.49550 * 144.99663 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7055 1.3491 -0.1222 5 1 1.8020 2.4480 -1.1468 6 1 1.9852 2.3422 1.2689 7 6 2.0102 -1.2021 0.0005 8 1 3.0867 -1.2041 0.0874 9 7 1.3300 -2.3855 -0.1091 10 6 2.0504 -3.6569 -0.0048 11 6 3.0620 -3.9353 -1.1184 12 7 2.3653 -4.4814 -2.2857 13 6 3.0694 -4.8970 -3.3572 14 8 4.2817 -4.9037 -3.3209 15 6 2.3503 -5.3536 -4.6004 16 1 1.8495 -4.5054 -5.0671 17 6 1.3160 -6.4210 -4.2321 18 7 1.6317 -7.6696 -4.9396 19 6 2.9476 -8.1851 -4.5389 20 6 4.0282 -7.1677 -4.9165 21 6 3.3591 -5.9601 -5.5846 22 6 2.6007 -6.4459 -6.8264 23 6 1.5589 -7.4820 -6.3953 24 6 2.3867 -4.1653 1.3984 25 6 1.2931 -4.8524 0.5768 26 1 -0.4850 0.8401 -0.0004 27 1 0.3712 -2.3820 -0.2558 28 1 3.8008 -4.6554 -0.7665 29 1 3.5624 -3.0073 -1.3952 30 1 1.3974 -4.5438 -2.2875 31 1 0.3223 -6.0798 -4.5222 32 1 1.3407 -6.5961 -3.1566 33 1 3.1404 -9.1276 -5.0514 34 1 2.9618 -8.3474 -3.4612 35 1 4.7333 -7.6247 -5.6108 36 1 4.5545 -6.8437 -4.0187 37 1 4.1115 -5.2244 -5.8690 38 1 2.1009 -5.6022 -7.3023 39 1 3.3008 -6.9007 -7.5271 40 1 1.7611 -8.4296 -6.8945 41 1 0.5632 -7.1321 -6.6676 42 1 3.3287 -4.6981 1.5283 43 1 2.0716 -3.5540 2.2441 44 1 0.2591 -4.6928 0.8822 45 1 1.5156 -5.8371 0.1661 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699650882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:26 Heat of formation + Delta-G solvation = 5.346240 kcal Electronic energy + Delta-G solvation = -24570.842493 eV Core-core repulsion = 21202.899635 eV Total energy + Delta-G solvation = -3367.942858 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28509 -38.83100 -37.40077 -33.92037 -33.04705 -32.31015 -31.42064 -31.05635 -29.72968 -26.61291 -23.97661 -23.74532 -23.12364 -23.02728 -21.88839 -20.11673 -19.21301 -17.57113 -17.29665 -17.09454 -16.57458 -16.47634 -15.62496 -15.43186 -14.80585 -14.54575 -14.13957 -13.68800 -13.22587 -13.12130 -13.06730 -13.00840 -12.52182 -12.33087 -12.31510 -12.25249 -11.89724 -11.77619 -11.59120 -11.12455 -11.07529 -10.96674 -10.87170 -10.47499 -10.33873 -10.27104 -10.24186 -9.73595 -9.58103 -9.31353 -8.86317 -8.63673 -8.36388 -7.09973 -5.86521 -3.16791 2.88473 3.38454 3.41271 3.45845 3.47475 3.80737 4.36965 4.38527 4.52512 4.61930 4.74759 4.89521 5.01241 5.01886 5.07543 5.10945 5.19619 5.26939 5.31222 5.32624 5.44983 5.48595 5.61363 5.62193 5.68058 5.78294 5.79541 5.84115 5.95083 6.03001 6.08329 6.09744 6.21397 6.29695 6.41861 6.54910 6.64116 6.76447 6.83944 6.87364 6.89632 7.67280 7.85582 8.31644 8.51323 9.42765 9.96298 10.31730 11.35211 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020818 B = 0.003884 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.683700 B = 7206.601513 C = 7645.437563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.689 5.689 10 C 0.127 3.873 11 C 0.148 3.852 12 N -0.711 5.711 13 C 0.517 3.483 14 O -0.547 6.547 15 C -0.140 4.140 16 H 0.101 0.899 17 C 0.058 3.942 18 N -0.527 5.527 19 C 0.051 3.949 20 C -0.157 4.157 21 C -0.065 4.065 22 C -0.151 4.151 23 C 0.051 3.949 24 C -0.187 4.187 25 C -0.185 4.185 26 H 0.256 0.744 27 H 0.387 0.613 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.400 0.600 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 -16.490 -10.697 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.328 5.328 10 C 0.033 3.967 11 C 0.022 3.978 12 N -0.361 5.361 13 C 0.303 3.697 14 O -0.426 6.426 15 C -0.163 4.163 16 H 0.119 0.881 17 C -0.071 4.071 18 N -0.247 5.247 19 C -0.077 4.077 20 C -0.196 4.196 21 C -0.085 4.085 22 C -0.190 4.190 23 C -0.077 4.077 24 C -0.228 4.228 25 C -0.223 4.223 26 H 0.065 0.935 27 H 0.222 0.778 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.235 0.765 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.939 -16.668 -10.495 19.915 hybrid contribution 0.269 1.760 -0.209 1.793 sum 3.208 -14.908 -10.704 18.631 Atomic orbital electron populations 1.69683 1.05129 1.25749 1.57227 1.24740 0.95486 0.97749 1.02546 0.86133 0.78984 0.83957 0.77219 1.20410 1.21784 1.21793 1.19208 0.91437 0.83633 1.42642 0.90940 1.41790 1.07191 0.98332 1.85531 1.20174 0.96749 0.87692 0.92059 1.21247 0.93842 0.98210 0.84478 1.45959 1.10679 1.63060 1.16404 1.20398 0.87819 0.77161 0.84313 1.90630 1.14027 1.54930 1.82984 1.22101 0.98395 1.00672 0.95149 0.88084 1.22299 0.97577 0.87467 0.99722 1.62526 1.28906 1.27329 1.05929 1.22223 0.86985 0.97356 1.01147 1.22396 0.98689 0.95914 1.02572 1.20884 0.96382 0.97633 0.93594 1.22310 0.99109 0.99969 0.97632 1.22222 0.98887 0.98645 0.87960 1.23372 0.98343 1.03776 0.97266 1.23072 0.97766 0.95959 1.05461 0.93464 0.77791 0.92154 0.90746 0.76547 0.89621 0.89934 0.90822 0.90817 0.92033 0.89333 0.89738 0.91506 0.91410 0.90698 0.90538 0.89982 0.88603 0.88968 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.14 13.08 55.49 0.73 -26.42 16 2 C -0.01 -0.25 5.50 -17.44 -0.10 -0.34 16 3 Si 0.91 22.10 29.56 -169.99 -5.02 17.07 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.37 9.53 -15.06 -0.14 -6.51 16 8 H 0.07 1.93 7.79 -52.49 -0.41 1.52 16 9 N -0.69 -16.24 5.49 -47.23 -0.26 -16.50 16 10 C 0.13 2.39 2.16 -131.82 -0.28 2.11 16 11 C 0.15 2.65 5.77 -4.04 -0.02 2.63 16 12 N -0.71 -10.95 5.12 -60.29 -0.31 -11.26 16 13 C 0.52 7.95 6.60 -10.98 -0.07 7.87 16 14 O -0.55 -10.14 14.07 5.55 0.08 -10.07 16 15 C -0.14 -1.67 2.65 -91.48 -0.24 -1.91 16 16 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 17 C 0.06 0.61 5.38 -3.74 -0.02 0.59 16 18 N -0.53 -5.35 5.22 -234.30 -1.22 -6.57 16 19 C 0.05 0.52 6.10 -3.75 -0.02 0.50 16 20 C -0.16 -1.79 5.43 -26.46 -0.14 -1.94 16 21 C -0.07 -0.75 2.56 -89.99 -0.23 -0.98 16 22 C -0.15 -1.35 5.76 -26.46 -0.15 -1.51 16 23 C 0.05 0.44 6.09 -3.73 -0.02 0.42 16 24 C -0.19 -3.23 10.11 -26.69 -0.27 -3.50 16 25 C -0.18 -2.89 10.09 -26.69 -0.27 -3.16 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.39 9.69 8.06 -40.82 -0.33 9.36 16 28 H 0.06 1.04 7.88 -51.93 -0.41 0.63 16 29 H 0.07 1.56 7.72 -51.93 -0.40 1.16 16 30 H 0.40 5.60 7.81 -40.82 -0.32 5.28 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.90 7.05 -51.93 -0.37 0.53 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.25 5.86 -51.93 -0.30 0.94 16 37 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 43 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 44 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -30.05 351.89 -10.28 -40.34 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.58 Total: 13.84 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.74 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -1.06 Total: -60.75 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.05 -10.28 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699650882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.683 kcal (2) G-P(sol) polarization free energy of solvation -30.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds