Wall clock time and date at job start Tue Mar 31 2020 07:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 120.00156 * 2 1 4 4 H 1.48496 * 109.46821 * 5.00235 * 3 2 1 5 5 H 1.48493 * 109.46885 * 125.00205 * 3 2 1 6 6 H 1.48500 * 109.46854 * 245.00505 * 3 2 1 7 7 C 1.38812 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99552 * 174.49653 * 7 2 1 9 9 N 1.36932 * 120.00001 * 354.50440 * 7 2 1 10 10 C 1.46504 * 119.99847 * 185.44479 * 9 7 2 11 11 C 1.53000 * 115.54978 * 64.58479 * 10 9 7 12 12 N 1.46502 * 109.46654 * 80.45943 * 11 10 9 13 13 C 1.34782 * 119.99875 * 184.10209 * 12 11 10 14 14 O 1.21280 * 119.99805 * 4.99131 * 13 12 11 15 15 C 1.50699 * 119.99954 * 184.99162 * 13 12 11 16 16 H 1.08997 * 109.57776 * 291.84708 * 15 13 12 17 17 C 1.53132 * 109.57774 * 52.11327 * 15 13 12 18 18 N 1.46909 * 109.37458 * 119.79195 * 17 15 13 19 19 C 1.46934 * 111.05609 * 62.00116 * 18 17 15 20 20 C 1.53135 * 109.35327 * 298.04989 * 19 18 17 21 21 C 1.53384 * 108.84251 * 359.93165 * 20 19 18 22 22 C 1.53393 * 108.59874 * 301.08061 * 21 20 19 23 23 C 1.46948 * 111.05268 * 298.00686 * 18 17 15 24 24 C 1.53001 * 117.49516 * 278.91809 * 10 9 7 25 25 C 1.53002 * 117.49782 * 210.26111 * 10 9 7 26 26 H 0.97000 * 119.99281 * 359.97438 * 1 2 3 27 27 H 0.96994 * 120.00346 * 5.43801 * 9 7 2 28 28 H 1.09007 * 109.46909 * 200.45306 * 11 10 9 29 29 H 1.08994 * 109.47677 * 320.45867 * 11 10 9 30 30 H 0.96996 * 120.00534 * 4.09439 * 12 11 10 31 31 H 1.09003 * 109.48829 * 239.76091 * 17 15 13 32 32 H 1.09004 * 109.49431 * 359.81740 * 17 15 13 33 33 H 1.09000 * 109.49476 * 58.01256 * 19 18 17 34 34 H 1.08997 * 109.49484 * 178.08519 * 19 18 17 35 35 H 1.08998 * 109.57046 * 240.12089 * 20 19 18 36 36 H 1.09000 * 109.68065 * 119.80483 * 20 19 18 37 37 H 1.08997 * 110.76322 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.57799 * 299.11993 * 22 21 20 39 39 H 1.09010 * 109.57584 * 178.73365 * 22 21 20 40 40 H 1.09003 * 109.48692 * 181.92344 * 23 18 17 41 41 H 1.09004 * 109.49231 * 301.97019 * 23 18 17 42 42 H 1.08994 * 117.50186 * 0.02562 * 24 10 9 43 43 H 1.09009 * 117.49560 * 145.02072 * 24 10 9 44 44 H 1.08998 * 117.49183 * 214.97672 * 25 10 9 45 45 H 1.08993 * 117.49947 * 359.97008 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2899 2.7438 0.1221 5 1 3.1933 1.6448 1.1468 6 1 3.0101 1.7506 -1.2690 7 6 2.0102 -1.2022 -0.0005 8 1 3.0866 -1.2043 -0.0902 9 7 1.3302 -2.3853 0.1125 10 6 2.0677 -3.6456 0.2320 11 6 2.9125 -3.7981 1.4985 12 7 2.0521 -4.2006 2.6138 13 6 2.5664 -4.3155 3.8543 14 8 3.7181 -3.9992 4.0650 15 6 1.7104 -4.8372 4.9796 16 1 0.9287 -4.1133 5.2096 17 6 1.0731 -6.1666 4.5657 18 7 1.5040 -7.2228 5.4915 19 6 1.0577 -6.9377 6.8621 20 6 1.6938 -5.6298 7.3413 21 6 2.5801 -5.0705 6.2213 22 6 3.6520 -6.1130 5.8789 23 6 2.9610 -7.4073 5.4405 24 6 2.6043 -4.2748 -1.0552 25 6 1.4101 -4.9054 -0.3346 26 1 -0.4849 0.8401 0.0004 27 1 0.3603 -2.3891 0.1135 28 1 3.6765 -4.5586 1.3362 29 1 3.3906 -2.8472 1.7332 30 1 1.1122 -4.3842 2.4596 31 1 -0.0126 -6.0752 4.5983 32 1 1.3865 -6.4206 3.5530 33 1 -0.0280 -6.8415 6.8785 34 1 1.3608 -7.7521 7.5201 35 1 2.3008 -5.8217 8.2260 36 1 0.9129 -4.9090 7.5835 37 1 3.0501 -4.1369 6.5303 38 1 4.2668 -6.3069 6.7578 39 1 4.2779 -5.7405 5.0679 40 1 3.2485 -8.2179 6.1101 41 1 3.2610 -7.6532 4.4219 42 1 2.4090 -3.7510 -1.9909 43 1 3.5591 -4.7979 -0.9997 44 1 1.5796 -5.8431 0.1947 45 1 0.4286 -4.7968 -0.7959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699650883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:27 Heat of formation + Delta-G solvation = 5.555516 kcal Electronic energy + Delta-G solvation = -24620.964925 eV Core-core repulsion = 21253.031142 eV Total energy + Delta-G solvation = -3367.933783 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26266 -38.79692 -37.39582 -33.88564 -33.04014 -32.29263 -31.39957 -31.04048 -29.71401 -26.59893 -23.96008 -23.71071 -23.11087 -23.01121 -21.90700 -20.09840 -19.19509 -17.56290 -17.26249 -17.09364 -16.55473 -16.46108 -15.55917 -15.40663 -14.81762 -14.54988 -14.11393 -13.70202 -13.19695 -13.09118 -13.05368 -12.95395 -12.53631 -12.31365 -12.29773 -12.23999 -11.91115 -11.74278 -11.56350 -11.10429 -11.03982 -10.98284 -10.85752 -10.45123 -10.32608 -10.31512 -10.20044 -9.77896 -9.54354 -9.29454 -8.84917 -8.58552 -8.36385 -7.08524 -5.85779 -3.15313 2.93241 3.40865 3.44618 3.46019 3.47909 3.82080 4.38518 4.39462 4.53781 4.62389 4.77056 4.91273 5.02879 5.03507 5.09066 5.12321 5.20320 5.28890 5.33086 5.33811 5.42985 5.50447 5.61635 5.62952 5.69236 5.79422 5.80294 5.85628 5.96792 6.04865 6.06776 6.12311 6.23021 6.31465 6.40791 6.54562 6.67625 6.74806 6.86383 6.89437 6.90753 7.68020 7.89010 8.32863 8.56057 9.44253 9.97642 10.32990 11.36111 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.004049 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.251232 B = 6914.190053 C = 7475.074622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.688 5.688 10 C 0.129 3.871 11 C 0.148 3.852 12 N -0.710 5.710 13 C 0.517 3.483 14 O -0.546 6.546 15 C -0.141 4.141 16 H 0.100 0.900 17 C 0.059 3.941 18 N -0.527 5.527 19 C 0.052 3.948 20 C -0.150 4.150 21 C -0.065 4.065 22 C -0.157 4.157 23 C 0.051 3.949 24 C -0.189 4.189 25 C -0.186 4.186 26 H 0.257 0.743 27 H 0.387 0.613 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.399 0.601 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 -15.934 11.463 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.328 5.328 10 C 0.035 3.965 11 C 0.022 3.978 12 N -0.360 5.360 13 C 0.303 3.697 14 O -0.424 6.424 15 C -0.164 4.164 16 H 0.118 0.882 17 C -0.070 4.070 18 N -0.247 5.247 19 C -0.077 4.077 20 C -0.189 4.189 21 C -0.085 4.085 22 C -0.195 4.195 23 C -0.077 4.077 24 C -0.230 4.230 25 C -0.224 4.224 26 H 0.066 0.934 27 H 0.222 0.778 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.233 0.767 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.090 -16.002 11.429 19.775 hybrid contribution 0.041 1.846 0.112 1.850 sum 2.131 -14.156 11.541 18.388 Atomic orbital electron populations 1.69662 1.05143 1.25981 1.57010 1.24752 0.95491 0.97707 1.02420 0.86284 0.78665 0.83405 0.78003 1.21649 1.21045 1.21196 1.19115 0.91600 0.83649 1.42692 0.91028 1.41765 1.05105 0.99300 1.86587 1.20166 0.97916 0.86915 0.91511 1.21230 0.91711 1.00125 0.84706 1.45912 1.13580 1.68809 1.07687 1.20393 0.87938 0.77853 0.83518 1.90635 1.18677 1.49838 1.83244 1.22098 0.99200 1.00026 0.95073 0.88177 1.22290 1.00216 0.87328 0.97133 1.62532 1.12880 1.42397 1.06907 1.22216 0.99992 0.96074 0.89403 1.22290 0.99707 0.98603 0.98337 1.20879 0.95087 0.99548 0.92992 1.22389 0.98493 0.95784 1.02876 1.22229 0.86587 0.96898 1.01992 1.23378 0.96498 1.04317 0.98777 1.23076 0.98034 0.96208 1.05079 0.93364 0.77770 0.92714 0.90311 0.76656 0.89714 0.89872 0.90568 0.90695 0.91430 0.91507 0.89674 0.92016 0.89370 0.90837 0.90837 0.88660 0.89952 0.89447 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.31 13.07 55.49 0.73 -26.59 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.30 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.47 9.52 -15.06 -0.14 -6.62 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.69 -16.36 5.50 -47.23 -0.26 -16.62 16 10 C 0.13 2.43 2.17 -131.81 -0.29 2.14 16 11 C 0.15 2.68 5.74 -4.04 -0.02 2.65 16 12 N -0.71 -11.19 5.01 -60.29 -0.30 -11.49 16 13 C 0.52 8.22 6.59 -10.98 -0.07 8.15 16 14 O -0.55 -10.53 14.08 5.56 0.08 -10.45 16 15 C -0.14 -1.72 2.63 -91.50 -0.24 -1.96 16 16 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.06 0.62 5.44 -3.75 -0.02 0.60 16 18 N -0.53 -5.40 5.22 -234.29 -1.22 -6.62 16 19 C 0.05 0.45 6.09 -3.74 -0.02 0.43 16 20 C -0.15 -1.38 5.75 -26.46 -0.15 -1.53 16 21 C -0.07 -0.77 2.58 -90.02 -0.23 -1.00 16 22 C -0.16 -1.83 5.43 -26.46 -0.14 -1.98 16 23 C 0.05 0.53 6.09 -3.73 -0.02 0.51 16 24 C -0.19 -3.20 10.11 -26.69 -0.27 -3.47 16 25 C -0.19 -2.86 10.07 -26.69 -0.27 -3.13 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.39 9.78 8.04 -40.82 -0.33 9.45 16 28 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16 29 H 0.08 1.71 7.74 -51.93 -0.40 1.31 16 30 H 0.40 5.66 8.07 -40.82 -0.33 5.33 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.91 7.17 -51.93 -0.37 0.54 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 1.14 8.03 -51.93 -0.42 0.73 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.28 5.88 -51.92 -0.31 0.97 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 43 H 0.08 1.24 8.08 -51.92 -0.42 0.82 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -30.44 352.27 -10.30 -40.74 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -7.61 Total: 13.94 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -1.06 Total: -61.32 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.44 -10.30 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699650883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.294 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds