Wall clock time and date at job start Tue Mar 31 2020 07:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 120.00156 * 2 1 4 4 H 1.48496 * 109.46821 * 5.00235 * 3 2 1 5 5 H 1.48493 * 109.46885 * 125.00205 * 3 2 1 6 6 H 1.48500 * 109.46854 * 245.00505 * 3 2 1 7 7 C 1.38812 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99552 * 174.49653 * 7 2 1 9 9 N 1.36932 * 120.00001 * 354.50440 * 7 2 1 10 10 C 1.46504 * 119.99847 * 185.44479 * 9 7 2 11 11 C 1.53000 * 115.54978 * 64.58479 * 10 9 7 12 12 N 1.46502 * 109.46654 * 80.45943 * 11 10 9 13 13 C 1.34782 * 119.99875 * 184.10209 * 12 11 10 14 14 O 1.21280 * 119.99805 * 4.99131 * 13 12 11 15 15 C 1.50699 * 119.99954 * 184.99162 * 13 12 11 16 16 H 1.08997 * 109.57776 * 291.84708 * 15 13 12 17 17 C 1.53132 * 109.57774 * 52.11327 * 15 13 12 18 18 N 1.46909 * 109.37458 * 119.79195 * 17 15 13 19 19 C 1.46934 * 111.05609 * 62.00116 * 18 17 15 20 20 C 1.53135 * 109.35327 * 298.04989 * 19 18 17 21 21 C 1.53384 * 108.84251 * 359.93165 * 20 19 18 22 22 C 1.53393 * 108.59874 * 301.08061 * 21 20 19 23 23 C 1.46948 * 111.05268 * 298.00686 * 18 17 15 24 24 C 1.53001 * 117.49516 * 278.91809 * 10 9 7 25 25 C 1.53002 * 117.49782 * 210.26111 * 10 9 7 26 26 H 0.97000 * 119.99281 * 359.97438 * 1 2 3 27 27 H 0.96994 * 120.00346 * 5.43801 * 9 7 2 28 28 H 1.09007 * 109.46909 * 200.45306 * 11 10 9 29 29 H 1.08994 * 109.47677 * 320.45867 * 11 10 9 30 30 H 0.96996 * 120.00534 * 4.09439 * 12 11 10 31 31 H 1.09003 * 109.48829 * 239.76091 * 17 15 13 32 32 H 1.09004 * 109.49431 * 359.81740 * 17 15 13 33 33 H 1.09000 * 109.49476 * 58.01256 * 19 18 17 34 34 H 1.08997 * 109.49484 * 178.08519 * 19 18 17 35 35 H 1.08998 * 109.57046 * 240.12089 * 20 19 18 36 36 H 1.09000 * 109.68065 * 119.80483 * 20 19 18 37 37 H 1.08997 * 110.76322 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.57799 * 299.11993 * 22 21 20 39 39 H 1.09010 * 109.57584 * 178.73365 * 22 21 20 40 40 H 1.09003 * 109.48692 * 181.92344 * 23 18 17 41 41 H 1.09004 * 109.49231 * 301.97019 * 23 18 17 42 42 H 1.08994 * 117.50186 * 0.02562 * 24 10 9 43 43 H 1.09009 * 117.49560 * 145.02072 * 24 10 9 44 44 H 1.08998 * 117.49183 * 214.97672 * 25 10 9 45 45 H 1.08993 * 117.49947 * 359.97008 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 1.2899 2.7438 0.1221 5 1 3.1933 1.6448 1.1468 6 1 3.0101 1.7506 -1.2690 7 6 2.0102 -1.2022 -0.0005 8 1 3.0866 -1.2043 -0.0902 9 7 1.3302 -2.3853 0.1125 10 6 2.0677 -3.6456 0.2320 11 6 2.9125 -3.7981 1.4985 12 7 2.0521 -4.2006 2.6138 13 6 2.5664 -4.3155 3.8543 14 8 3.7181 -3.9992 4.0650 15 6 1.7104 -4.8372 4.9796 16 1 0.9287 -4.1133 5.2096 17 6 1.0731 -6.1666 4.5657 18 7 1.5040 -7.2228 5.4915 19 6 1.0577 -6.9377 6.8621 20 6 1.6938 -5.6298 7.3413 21 6 2.5801 -5.0705 6.2213 22 6 3.6520 -6.1130 5.8789 23 6 2.9610 -7.4073 5.4405 24 6 2.6043 -4.2748 -1.0552 25 6 1.4101 -4.9054 -0.3346 26 1 -0.4849 0.8401 0.0004 27 1 0.3603 -2.3891 0.1135 28 1 3.6765 -4.5586 1.3362 29 1 3.3906 -2.8472 1.7332 30 1 1.1122 -4.3842 2.4596 31 1 -0.0126 -6.0752 4.5983 32 1 1.3865 -6.4206 3.5530 33 1 -0.0280 -6.8415 6.8785 34 1 1.3608 -7.7521 7.5201 35 1 2.3008 -5.8217 8.2260 36 1 0.9129 -4.9090 7.5835 37 1 3.0501 -4.1369 6.5303 38 1 4.2668 -6.3069 6.7578 39 1 4.2779 -5.7405 5.0679 40 1 3.2485 -8.2179 6.1101 41 1 3.2610 -7.6532 4.4219 42 1 2.4090 -3.7510 -1.9909 43 1 3.5591 -4.7979 -0.9997 44 1 1.5796 -5.8431 0.1947 45 1 0.4286 -4.7968 -0.7959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699650883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:27 Heat of formation + Delta-G solvation = -16.151040 kcal Electronic energy + Delta-G solvation = -24621.906192 eV Core-core repulsion = 21253.031142 eV Total energy + Delta-G solvation = -3368.875050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23112 -40.05548 -38.83810 -35.38397 -34.86395 -33.18605 -32.34061 -31.83648 -31.65802 -27.95421 -25.96214 -24.74169 -23.96071 -23.80313 -23.23905 -21.35567 -20.69459 -19.16961 -18.60443 -18.23011 -17.52680 -17.40636 -17.00818 -16.60897 -16.12278 -16.08456 -15.56712 -15.25546 -14.91872 -14.26205 -14.02961 -13.91619 -13.72624 -13.55119 -13.12437 -13.11289 -13.05208 -12.99112 -12.89753 -12.80275 -12.49417 -12.31325 -12.25403 -11.98209 -11.85843 -11.73845 -11.32703 -11.11138 -10.97238 -10.86593 -10.45428 -9.98462 -9.21002 -9.03971 -7.99187 -5.26457 1.42918 1.45140 1.50896 1.66510 2.19207 2.50502 3.03351 3.07708 3.36451 3.48224 3.63891 3.67831 3.84419 3.85300 4.03263 4.09651 4.18695 4.24178 4.29418 4.30923 4.35659 4.41198 4.49512 4.64467 4.77057 4.82490 4.84819 4.93073 4.97612 5.01640 5.04523 5.10012 5.15732 5.19841 5.20381 5.21077 5.37056 5.39805 5.52241 5.54433 6.08094 6.14918 6.24586 6.62694 7.29374 7.31003 8.04884 8.28376 9.23076 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.004049 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.251232 B = 6914.190053 C = 7475.074622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.961 3.039 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.067 0.933 9 N -0.698 5.698 10 C 0.099 3.901 11 C 0.161 3.839 12 N -0.704 5.704 13 C 0.512 3.488 14 O -0.585 6.585 15 C -0.134 4.134 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.528 5.528 19 C 0.051 3.949 20 C -0.142 4.142 21 C -0.070 4.070 22 C -0.153 4.153 23 C 0.055 3.945 24 C -0.186 4.186 25 C -0.150 4.150 26 H 0.251 0.749 27 H 0.378 0.622 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.409 0.591 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -18.199 12.285 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.790 3.210 4 H -0.219 1.219 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.085 0.915 9 N -0.336 5.336 10 C 0.006 3.994 11 C 0.035 3.965 12 N -0.354 5.354 13 C 0.300 3.700 14 O -0.465 6.465 15 C -0.157 4.157 16 H 0.125 0.875 17 C -0.066 4.066 18 N -0.248 5.248 19 C -0.077 4.077 20 C -0.181 4.181 21 C -0.090 4.090 22 C -0.192 4.192 23 C -0.073 4.073 24 C -0.227 4.227 25 C -0.187 4.187 26 H 0.060 0.940 27 H 0.211 0.789 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.245 0.755 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.139 0.861 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.540 -18.315 12.246 22.086 hybrid contribution 0.297 2.480 -0.147 2.502 sum 1.837 -15.836 12.099 20.014 Atomic orbital electron populations 1.69781 1.06198 1.26049 1.59175 1.25393 0.96254 1.00434 1.03687 0.85405 0.77432 0.80192 0.77948 1.21862 1.21272 1.20458 1.19356 0.91524 0.85090 1.40516 0.91504 1.41790 1.04760 1.00289 1.86790 1.20363 0.99866 0.86663 0.92483 1.20919 0.92078 0.98402 0.85093 1.45862 1.13814 1.68442 1.07323 1.21119 0.87825 0.76935 0.84131 1.90621 1.20638 1.51444 1.83845 1.22137 0.98681 1.01228 0.93620 0.87473 1.22321 1.01143 0.86037 0.97061 1.62568 1.12450 1.41963 1.07786 1.22330 1.00738 0.95996 0.88598 1.22250 0.99437 0.99016 0.97422 1.20890 0.95566 0.98694 0.93831 1.22317 0.98327 0.96511 1.02036 1.22215 0.86745 0.96404 1.01981 1.23387 0.98561 1.03994 0.96724 1.23159 0.97373 0.95413 1.02804 0.93980 0.78911 0.91201 0.94772 0.75514 0.87689 0.90276 0.89214 0.89288 0.90499 0.90833 0.92211 0.91157 0.92675 0.89058 0.91577 0.90359 0.87593 0.86118 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.49 13.07 21.65 0.28 -57.21 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.96 46.70 29.56 68.60 2.03 48.73 16 4 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.23 -12.79 9.52 84.03 0.80 -11.99 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.70 -33.46 5.50 -303.33 -1.67 -35.12 16 10 C 0.10 3.63 2.17 3.60 0.01 3.63 16 11 C 0.16 5.83 5.74 86.38 0.50 6.33 16 12 N -0.70 -21.87 5.01 -463.05 -2.32 -24.19 16 13 C 0.51 16.33 6.59 87.66 0.58 16.91 16 14 O -0.58 -23.34 14.08 -3.03 -0.04 -23.38 16 15 C -0.13 -3.13 2.63 -11.37 -0.03 -3.16 16 16 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 17 C 0.06 1.18 5.44 86.35 0.47 1.65 16 18 N -0.53 -9.26 5.22 -895.17 -4.67 -13.94 16 19 C 0.05 0.72 6.09 86.34 0.53 1.24 16 20 C -0.14 -2.27 5.75 30.77 0.18 -2.09 16 21 C -0.07 -1.60 2.58 -10.40 -0.03 -1.63 16 22 C -0.15 -3.49 5.43 30.77 0.17 -3.32 16 23 C 0.05 1.03 6.09 86.34 0.53 1.56 16 24 C -0.19 -5.99 10.11 30.62 0.31 -5.68 16 25 C -0.15 -4.20 10.07 30.62 0.31 -3.89 16 26 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.38 19.28 8.04 -92.71 -0.75 18.54 16 28 H 0.07 2.30 7.94 -2.38 -0.02 2.28 16 29 H 0.03 1.53 7.74 -2.39 -0.02 1.52 16 30 H 0.41 11.07 8.07 -92.71 -0.75 10.33 16 31 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.54 7.17 -2.38 -0.02 1.53 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.65 8.03 -2.39 -0.02 1.63 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.64 5.88 -2.38 -0.01 1.62 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.11 2.90 8.08 -2.38 -0.02 2.88 16 44 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -67.51 352.27 -2.12 -69.64 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -0.51 Total: 39.13 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 4.78 Total: -3.66 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -8.38 Total: -130.46 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.04 Total: -23.38 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -67.51 -2.12 -69.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699650883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.484 kcal (2) G-P(sol) polarization free energy of solvation -67.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds