Wall clock time and date at job start Tue Mar 31 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48505 * 109.46997 * 239.99784 * 3 2 1 5 5 H 1.48501 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 120.00151 * 3 2 1 7 7 C 1.38812 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99816 * 197.01560 * 7 2 1 9 9 N 1.36934 * 119.99889 * 17.01979 * 7 2 1 10 10 C 1.47086 * 120.87987 * 206.58166 * 9 7 2 11 11 C 1.53238 * 108.52232 * 231.16185 * 10 9 7 12 12 N 1.46899 * 109.33976 * 306.17413 * 11 10 9 13 13 C 1.46900 * 110.99521 * 187.25266 * 12 11 10 14 14 C 1.53002 * 109.46959 * 169.99644 * 13 12 11 15 15 N 1.46497 * 109.47405 * 179.97438 * 14 13 12 16 16 C 1.34772 * 120.00449 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00181 * 180.02562 * 16 15 14 19 19 C 1.54633 * 111.03627 * 180.02562 * 18 16 15 20 20 C 1.51101 * 104.82768 * 93.34214 * 19 18 16 21 21 C 1.30802 * 110.94488 * 16.49249 * 20 19 18 22 22 C 1.51100 * 111.14866 * 359.95062 * 21 20 19 23 23 C 1.46895 * 111.26957 * 63.10395 * 12 11 10 24 24 C 1.47080 * 120.88321 * 26.56312 * 9 7 2 25 25 H 0.97000 * 120.00230 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.62354 * 111.45173 * 10 9 7 27 27 H 1.08994 * 109.78658 * 350.97436 * 10 9 7 28 28 H 1.08999 * 109.49109 * 186.20726 * 11 10 9 29 29 H 1.08996 * 109.48981 * 66.13512 * 11 10 9 30 30 H 1.09001 * 109.47679 * 50.00068 * 13 12 11 31 31 H 1.09000 * 109.47360 * 289.99796 * 13 12 11 32 32 H 1.09009 * 109.46738 * 60.00381 * 14 13 12 33 33 H 1.09000 * 109.47717 * 300.00380 * 14 13 12 34 34 H 0.97006 * 119.99803 * 0.02562 * 15 14 13 35 35 H 1.08998 * 110.94230 * 56.02080 * 18 16 15 36 36 H 1.09007 * 110.38556 * 212.21534 * 19 18 16 37 37 H 1.09004 * 110.38851 * 334.47160 * 19 18 16 38 38 H 1.07995 * 124.44884 * 196.48926 * 20 19 18 39 39 H 1.07992 * 124.40412 * 179.97438 * 21 20 19 40 40 H 1.09005 * 110.38950 * 224.78281 * 22 21 20 41 41 H 1.09004 * 110.48690 * 102.45405 * 22 21 20 42 42 H 1.09000 * 109.49385 * 56.85874 * 23 12 11 43 43 H 1.09003 * 109.49223 * 176.93176 * 23 12 11 44 44 H 1.09001 * 109.62841 * 248.54496 * 24 9 7 45 45 H 1.08996 * 109.62643 * 9.12855 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0549 -1.2224 0.2743 9 7 1.3706 -2.3622 -0.3461 10 6 1.8311 -3.6609 0.1685 11 6 2.0025 -4.6201 -1.0142 12 7 0.7549 -4.6656 -1.7884 13 6 0.8185 -5.7007 -2.8288 14 6 -0.5691 -5.8906 -3.4448 15 7 -0.5056 -6.9224 -4.4828 16 6 -1.6171 -7.2605 -5.1659 17 8 -2.6699 -6.7100 -4.9217 18 6 -1.5518 -8.3223 -6.2333 19 6 -2.9382 -8.5438 -6.8814 20 6 -2.9486 -7.6383 -8.0911 21 6 -1.7364 -7.2552 -8.3988 22 6 -0.7210 -7.8408 -7.4453 23 6 0.4402 -3.3537 -2.3695 24 6 0.2047 -2.3426 -1.2424 25 1 -0.4850 0.8400 -0.0004 26 1 1.0922 -4.0628 0.8618 27 1 2.7850 -3.5375 0.6812 28 1 2.2366 -5.6176 -0.6425 29 1 2.8138 -4.2696 -1.6521 30 1 1.1515 -6.6399 -2.3871 31 1 1.5212 -5.3944 -3.6037 32 1 -0.9021 -4.9513 -3.8866 33 1 -1.2719 -6.1969 -2.6700 34 1 0.3364 -7.3629 -4.6779 35 1 -1.1539 -9.2543 -5.8319 36 1 -3.0536 -9.5844 -7.1849 37 1 -3.7308 -8.2611 -6.1886 38 1 -3.8389 -7.3473 -8.6286 39 1 -1.4936 -6.6050 -9.2262 40 1 -0.0060 -7.0782 -7.1366 41 1 -0.2030 -8.6808 -7.9083 42 1 1.2733 -3.0208 -2.9886 43 1 -0.4588 -3.4329 -2.9808 44 1 -0.6905 -2.6179 -0.6848 45 1 0.0843 -1.3450 -1.6647 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752362574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:03 Heat of formation + Delta-G solvation = 13.563685 kcal Electronic energy + Delta-G solvation = -23493.687665 eV Core-core repulsion = 20126.101142 eV Total energy + Delta-G solvation = -3367.586523 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43367 -38.37844 -37.55353 -35.38560 -33.95937 -31.51866 -30.15205 -29.94022 -28.65539 -28.27688 -25.88329 -23.52516 -22.76816 -22.34652 -21.29593 -19.88352 -19.10220 -19.05227 -17.40210 -16.82323 -16.58827 -16.02274 -15.40169 -15.00455 -14.71295 -14.40968 -14.19441 -13.72417 -13.53342 -13.43530 -13.02856 -12.99887 -12.66621 -12.52481 -12.42126 -11.83606 -11.66047 -11.58119 -11.44143 -11.41709 -11.26380 -11.04295 -10.72509 -10.47813 -10.31123 -10.05376 -9.94793 -9.74187 -9.62140 -9.17083 -9.04614 -8.49590 -7.88915 -6.66087 -5.76680 -3.18168 2.01206 2.54845 3.00093 3.39091 3.45044 3.45909 4.18477 4.32041 4.37016 4.51250 4.59428 4.90159 4.96702 5.02116 5.17536 5.27773 5.33952 5.40305 5.41033 5.42793 5.51768 5.56827 5.64824 5.82485 5.83963 5.90513 5.97510 6.07829 6.11065 6.20923 6.26312 6.32086 6.38314 6.54114 6.60975 6.69032 6.92669 7.24298 7.38182 7.54878 7.64301 7.69917 7.81858 8.14955 8.44619 9.22264 9.85710 10.44254 11.32116 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027437 B = 0.002759 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.291803 B =10146.936698 C =10578.312297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.121 3.879 15 N -0.729 5.729 16 C 0.521 3.479 17 O -0.533 6.533 18 C -0.118 4.118 19 C -0.089 4.089 20 C -0.152 4.152 21 C -0.179 4.179 22 C -0.088 4.088 23 C 0.031 3.969 24 C 0.178 3.822 25 H 0.255 0.745 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.398 0.602 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.025 0.975 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -18.872 -14.606 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.084 4.084 14 C -0.003 4.003 15 N -0.381 5.381 16 C 0.306 3.694 17 O -0.408 6.408 18 C -0.140 4.140 19 C -0.127 4.127 20 C -0.170 4.170 21 C -0.197 4.197 22 C -0.125 4.125 23 C -0.098 4.098 24 C 0.052 3.948 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.231 0.769 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.327 -18.404 -14.049 23.192 hybrid contribution 1.539 0.911 -0.711 1.924 sum 0.212 -17.493 -14.759 22.889 Atomic orbital electron populations 1.70021 1.05195 1.25628 1.53859 1.25033 0.95311 0.98361 1.01020 0.86363 0.78884 0.83412 0.78056 1.21140 1.21596 1.20895 1.19145 0.92551 0.84807 1.41836 0.91693 1.44120 1.34158 1.01248 1.52363 1.20969 0.97842 0.86500 0.92525 1.22624 0.89283 0.99492 0.96906 1.61872 1.34626 1.05779 1.23168 1.22194 0.95055 0.96886 0.94220 1.21383 0.98027 0.91024 0.89849 1.45938 1.11581 1.41555 1.38988 1.20337 0.83626 0.83502 0.81892 1.90714 1.29515 1.53858 1.66761 1.22197 0.98901 0.98188 0.94706 1.21308 0.96398 0.99124 0.95838 1.23339 0.97810 0.98163 0.97721 1.23272 0.94975 1.01019 1.00442 1.21329 0.97358 1.00624 0.93230 1.23004 0.98812 0.89213 0.98760 1.20864 0.88979 0.96559 0.88386 0.93523 0.95619 0.92562 0.91987 0.95371 0.90909 0.95052 0.91141 0.90473 0.76882 0.87595 0.90071 0.89181 0.85648 0.85717 0.90717 0.89669 0.95625 0.91787 0.95452 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 11.15 55.49 0.62 -25.93 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 3 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 16 8 H 0.07 1.76 7.88 -52.48 -0.41 1.34 16 9 N -0.60 -15.24 3.04 -172.02 -0.52 -15.76 16 10 C 0.15 3.16 6.69 -3.60 -0.02 3.13 16 11 C 0.05 0.81 5.62 -3.70 -0.02 0.79 16 12 N -0.53 -9.26 4.63 -234.33 -1.08 -10.34 16 13 C 0.05 0.60 5.08 -3.82 -0.02 0.58 16 14 C 0.12 1.62 5.61 -4.04 -0.02 1.60 16 15 N -0.73 -7.72 5.49 -60.29 -0.33 -8.05 16 16 C 0.52 6.30 7.09 -10.99 -0.08 6.22 16 17 O -0.53 -8.86 15.53 5.55 0.09 -8.77 16 18 C -0.12 -0.99 3.55 -90.05 -0.32 -1.31 16 19 C -0.09 -0.79 6.14 -26.83 -0.16 -0.95 16 20 C -0.15 -1.38 10.80 -35.78 -0.39 -1.76 16 21 C -0.18 -1.53 10.78 -35.78 -0.39 -1.92 16 22 C -0.09 -0.64 6.36 -26.83 -0.17 -0.81 16 23 C 0.03 0.61 5.46 -3.71 -0.02 0.59 16 24 C 0.18 4.37 5.42 -3.60 -0.02 4.36 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 28 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.84 7.97 -51.93 -0.41 0.42 16 31 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.07 1.09 6.40 -51.92 -0.33 0.76 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.40 2.94 8.47 -40.82 -0.35 2.60 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.09 0.98 7.01 -51.93 -0.36 0.61 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.07 0.55 7.85 -51.93 -0.41 0.14 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.41 6.12 -51.93 -0.32 2.09 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -32.77 355.40 -10.30 -43.07 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.53 Total: 0.33 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.86 Total: 3.29 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -1.32 Total: -60.08 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.77 -10.30 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752362574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.634 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds