Wall clock time and date at job start Tue Mar 31 2020 07:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48505 * 109.46997 * 239.99784 * 3 2 1 5 5 H 1.48501 * 109.47279 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47179 * 120.00151 * 3 2 1 7 7 C 1.38812 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99816 * 197.01560 * 7 2 1 9 9 N 1.36934 * 119.99889 * 17.01979 * 7 2 1 10 10 C 1.47086 * 120.87987 * 206.58166 * 9 7 2 11 11 C 1.53238 * 108.52232 * 231.16185 * 10 9 7 12 12 N 1.46899 * 109.33976 * 306.17413 * 11 10 9 13 13 C 1.46900 * 110.99521 * 187.25266 * 12 11 10 14 14 C 1.53002 * 109.46959 * 169.99644 * 13 12 11 15 15 N 1.46497 * 109.47405 * 179.97438 * 14 13 12 16 16 C 1.34772 * 120.00449 * 179.97438 * 15 14 13 17 17 O 1.21284 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00181 * 180.02562 * 16 15 14 19 19 C 1.54633 * 111.03627 * 180.02562 * 18 16 15 20 20 C 1.51101 * 104.82768 * 93.34214 * 19 18 16 21 21 C 1.30802 * 110.94488 * 16.49249 * 20 19 18 22 22 C 1.51100 * 111.14866 * 359.95062 * 21 20 19 23 23 C 1.46895 * 111.26957 * 63.10395 * 12 11 10 24 24 C 1.47080 * 120.88321 * 26.56312 * 9 7 2 25 25 H 0.97000 * 120.00230 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.62354 * 111.45173 * 10 9 7 27 27 H 1.08994 * 109.78658 * 350.97436 * 10 9 7 28 28 H 1.08999 * 109.49109 * 186.20726 * 11 10 9 29 29 H 1.08996 * 109.48981 * 66.13512 * 11 10 9 30 30 H 1.09001 * 109.47679 * 50.00068 * 13 12 11 31 31 H 1.09000 * 109.47360 * 289.99796 * 13 12 11 32 32 H 1.09009 * 109.46738 * 60.00381 * 14 13 12 33 33 H 1.09000 * 109.47717 * 300.00380 * 14 13 12 34 34 H 0.97006 * 119.99803 * 0.02562 * 15 14 13 35 35 H 1.08998 * 110.94230 * 56.02080 * 18 16 15 36 36 H 1.09007 * 110.38556 * 212.21534 * 19 18 16 37 37 H 1.09004 * 110.38851 * 334.47160 * 19 18 16 38 38 H 1.07995 * 124.44884 * 196.48926 * 20 19 18 39 39 H 1.07992 * 124.40412 * 179.97438 * 21 20 19 40 40 H 1.09005 * 110.38950 * 224.78281 * 22 21 20 41 41 H 1.09004 * 110.48690 * 102.45405 * 22 21 20 42 42 H 1.09000 * 109.49385 * 56.85874 * 23 12 11 43 43 H 1.09003 * 109.49223 * 176.93176 * 23 12 11 44 44 H 1.09001 * 109.62841 * 248.54496 * 24 9 7 45 45 H 1.08996 * 109.62643 * 9.12855 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0549 -1.2224 0.2743 9 7 1.3706 -2.3622 -0.3461 10 6 1.8311 -3.6609 0.1685 11 6 2.0025 -4.6201 -1.0142 12 7 0.7549 -4.6656 -1.7884 13 6 0.8185 -5.7007 -2.8288 14 6 -0.5691 -5.8906 -3.4448 15 7 -0.5056 -6.9224 -4.4828 16 6 -1.6171 -7.2605 -5.1659 17 8 -2.6699 -6.7100 -4.9217 18 6 -1.5518 -8.3223 -6.2333 19 6 -2.9382 -8.5438 -6.8814 20 6 -2.9486 -7.6383 -8.0911 21 6 -1.7364 -7.2552 -8.3988 22 6 -0.7210 -7.8408 -7.4453 23 6 0.4402 -3.3537 -2.3695 24 6 0.2047 -2.3426 -1.2424 25 1 -0.4850 0.8400 -0.0004 26 1 1.0922 -4.0628 0.8618 27 1 2.7850 -3.5375 0.6812 28 1 2.2366 -5.6176 -0.6425 29 1 2.8138 -4.2696 -1.6521 30 1 1.1515 -6.6399 -2.3871 31 1 1.5212 -5.3944 -3.6037 32 1 -0.9021 -4.9513 -3.8866 33 1 -1.2719 -6.1969 -2.6700 34 1 0.3364 -7.3629 -4.6779 35 1 -1.1539 -9.2543 -5.8319 36 1 -3.0536 -9.5844 -7.1849 37 1 -3.7308 -8.2611 -6.1886 38 1 -3.8389 -7.3473 -8.6286 39 1 -1.4936 -6.6050 -9.2262 40 1 -0.0060 -7.0782 -7.1366 41 1 -0.2030 -8.6808 -7.9083 42 1 1.2733 -3.0208 -2.9886 43 1 -0.4588 -3.4329 -2.9808 44 1 -0.6905 -2.6179 -0.6848 45 1 0.0843 -1.3450 -1.6647 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752362574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:02 Heat of formation + Delta-G solvation = -9.456373 kcal Electronic energy + Delta-G solvation = -23494.685889 eV Core-core repulsion = 20126.101142 eV Total energy + Delta-G solvation = -3368.584747 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30601 -39.81656 -38.42918 -36.80964 -35.43119 -33.32377 -31.66660 -31.14947 -29.72455 -29.01692 -27.52906 -25.10807 -24.32153 -23.53627 -22.50723 -20.93074 -20.64940 -19.69328 -18.75265 -18.18602 -17.43709 -17.15585 -16.71062 -16.46429 -15.96795 -15.90369 -15.44611 -15.31678 -14.98079 -14.97334 -14.71847 -14.12143 -13.71557 -13.42365 -13.21347 -13.06054 -13.00152 -12.83402 -12.63345 -12.58278 -12.40561 -12.29455 -12.20691 -12.05925 -12.04612 -11.86310 -11.56928 -11.43874 -10.91572 -10.59258 -10.12126 -9.76363 -9.31162 -8.69980 -7.88396 -5.33542 1.37143 1.45809 1.48442 1.55486 1.63428 2.06877 2.50264 3.08686 3.27164 3.53339 3.66593 3.69648 3.81495 3.90994 4.07396 4.28827 4.33542 4.33776 4.39312 4.45412 4.53736 4.63846 4.67012 4.70018 4.80340 4.81860 4.85499 4.92381 4.96366 4.99671 5.03514 5.05975 5.18974 5.20207 5.35806 5.41146 5.59904 5.64892 5.65810 5.96774 6.12831 6.22560 6.36021 6.56959 7.11671 7.27791 7.82885 8.37234 9.18436 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.027437 B = 0.002759 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.291803 B =10146.936698 C =10578.312297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.265 4.265 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.543 5.543 13 C 0.056 3.944 14 C 0.129 3.871 15 N -0.712 5.712 16 C 0.515 3.485 17 O -0.587 6.587 18 C -0.111 4.111 19 C -0.092 4.092 20 C -0.175 4.175 21 C -0.186 4.186 22 C -0.084 4.084 23 C 0.051 3.949 24 C 0.186 3.814 25 H 0.250 0.750 26 H 0.014 0.986 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.029 0.971 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.418 0.582 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.023 0.977 43 H 0.073 0.927 44 H -0.005 1.005 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -21.192 -15.843 26.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.395 4.395 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.269 5.269 13 C -0.073 4.073 14 C 0.005 3.995 15 N -0.365 5.365 16 C 0.302 3.698 17 O -0.466 6.466 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.193 4.193 21 C -0.203 4.203 22 C -0.121 4.121 23 C -0.079 4.079 24 C 0.059 3.941 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.047 0.953 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.159 0.841 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.041 0.959 43 H 0.091 0.909 44 H 0.013 0.987 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.263 -20.783 -15.297 25.837 hybrid contribution 0.723 1.575 -0.295 1.758 sum 1.987 -19.208 -15.592 24.820 Atomic orbital electron populations 1.70199 1.06783 1.25947 1.55457 1.25850 0.96071 1.01694 1.01344 0.85295 0.77490 0.78984 0.78402 1.20364 1.22141 1.19891 1.19531 0.92983 0.85941 1.41017 0.91161 1.44413 1.34112 1.02362 1.53008 1.21171 0.97576 0.85468 0.94250 1.22472 0.89040 1.00309 0.95238 1.61750 1.35081 1.05205 1.24846 1.22188 0.94907 0.96565 0.93593 1.21089 0.97878 0.90697 0.89873 1.45744 1.12368 1.40609 1.37816 1.21124 0.82892 0.83587 0.82150 1.90700 1.31599 1.55906 1.68438 1.22269 0.99031 0.98089 0.93841 1.21344 0.95973 1.00432 0.95148 1.23515 0.98362 0.99109 0.98349 1.23571 0.95292 1.00643 1.00838 1.21392 0.96803 1.01652 0.92251 1.22595 0.99197 0.89541 0.96546 1.20586 0.87858 0.96305 0.89302 0.94112 0.96775 0.91767 0.87990 0.95279 0.87767 0.93503 0.93676 0.92467 0.74488 0.84096 0.87663 0.91955 0.85628 0.85016 0.90542 0.86677 0.95867 0.90913 0.98738 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.21 11.15 21.65 0.24 -56.97 16 2 C -0.05 -3.11 4.94 84.86 0.42 -2.69 16 3 Si 0.97 45.51 29.59 68.60 2.03 47.54 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.26 -14.84 9.63 84.03 0.81 -14.03 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 9 N -0.61 -31.92 3.04 -698.14 -2.12 -34.04 16 10 C 0.14 5.89 6.69 86.35 0.58 6.46 16 11 C 0.06 1.88 5.62 86.38 0.49 2.37 16 12 N -0.54 -18.01 4.63 -895.28 -4.14 -22.15 16 13 C 0.06 1.29 5.08 86.30 0.44 1.72 16 14 C 0.13 3.30 5.61 86.38 0.48 3.78 16 15 N -0.71 -13.38 5.49 -463.05 -2.54 -15.92 16 16 C 0.51 11.78 7.09 87.66 0.62 12.40 16 17 O -0.59 -19.90 15.53 -3.04 -0.05 -19.95 16 18 C -0.11 -1.56 3.55 -10.43 -0.04 -1.59 16 19 C -0.09 -1.51 6.14 30.53 0.19 -1.32 16 20 C -0.18 -3.04 10.80 25.98 0.28 -2.76 16 21 C -0.19 -2.85 10.78 25.98 0.28 -2.57 16 22 C -0.08 -0.94 6.36 30.53 0.19 -0.75 16 23 C 0.05 2.00 5.46 86.38 0.47 2.47 16 24 C 0.19 9.46 5.42 86.35 0.47 9.93 16 25 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 2.53 7.96 -2.39 -0.02 2.51 16 28 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.85 7.97 -2.39 -0.02 1.83 16 31 H 0.05 1.00 8.12 -2.39 -0.02 0.98 16 32 H 0.04 1.39 6.40 -2.38 -0.02 1.38 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.42 4.48 8.47 -92.70 -0.79 3.70 16 35 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.06 1.38 7.01 -2.38 -0.02 1.37 16 38 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.08 0.86 7.85 -2.38 -0.02 0.85 16 41 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 2.72 6.16 -2.39 -0.01 2.71 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.05 3.15 6.12 -2.39 -0.01 3.13 16 Total: -1.00 -74.99 355.40 -0.72 -75.72 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.18 Total: 12.34 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 5.68 Total: 13.42 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -8.57 Total: -129.07 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.99 -0.72 -75.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752362574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.261 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds