Wall clock time and date at job start Tue Mar 31 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00173 * 2 1 4 4 H 1.48498 * 109.47039 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47505 * 120.00044 * 3 2 1 6 6 H 1.48500 * 109.47041 * 240.00216 * 3 2 1 7 7 C 1.38812 * 120.00013 * 179.72279 * 2 1 3 8 8 H 1.08002 * 120.00278 * 204.54441 * 7 2 1 9 9 N 1.36943 * 119.99941 * 24.55014 * 7 2 1 10 10 C 1.47079 * 120.87941 * 28.09170 * 9 7 2 11 11 C 1.53699 * 108.27453 * 128.75912 * 10 9 7 12 12 N 1.46904 * 109.25686 * 54.08035 * 11 10 9 13 13 C 1.46897 * 110.99896 * 172.60975 * 12 11 10 14 14 C 1.52998 * 109.47320 * 314.29917 * 13 12 11 15 15 N 1.46495 * 109.47564 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00246 * 180.02562 * 15 14 13 17 17 O 1.21278 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00176 * 179.97438 * 16 15 14 19 19 H 1.09001 * 115.54598 * 325.72488 * 18 16 15 20 20 C 1.52998 * 117.49803 * 111.38918 * 18 16 15 21 21 C 1.52993 * 117.50134 * 180.02562 * 18 16 15 22 22 C 1.52985 * 138.58860 * 121.61739 * 21 18 16 23 23 C 1.52993 * 138.58787 * 23.40533 * 21 18 16 24 24 C 1.46902 * 111.26826 * 296.75645 * 12 11 10 25 25 C 1.47077 * 120.88054 * 208.37387 * 9 7 2 26 26 H 0.97003 * 119.99721 * 185.79577 * 1 2 3 27 27 H 1.08997 * 109.62876 * 248.52478 * 10 9 7 28 28 H 1.08996 * 109.63122 * 9.10902 * 10 9 7 29 29 H 1.09001 * 109.64699 * 294.07757 * 11 10 9 30 30 H 1.09000 * 109.44495 * 173.96227 * 11 10 9 31 31 H 1.08996 * 109.47177 * 74.30162 * 13 12 11 32 32 H 1.09003 * 109.47297 * 194.30502 * 13 12 11 33 33 H 1.09002 * 109.47147 * 300.00950 * 14 13 12 34 34 H 1.09004 * 109.46980 * 60.00021 * 14 13 12 35 35 H 0.97003 * 119.99841 * 359.97438 * 15 14 13 36 36 H 1.08999 * 117.50075 * 214.98118 * 20 18 16 37 37 H 1.09005 * 117.50009 * 359.97438 * 20 18 16 38 38 H 1.09002 * 117.50417 * 336.60191 * 22 21 18 39 39 H 1.09003 * 117.49785 * 121.61813 * 22 21 18 40 40 H 1.08996 * 117.49716 * 238.38525 * 23 21 18 41 41 H 1.08997 * 117.49796 * 23.37596 * 23 21 18 42 42 H 1.08996 * 109.49359 * 303.14506 * 24 12 11 43 43 H 1.09000 * 109.51506 * 183.07540 * 24 12 11 44 44 H 1.09004 * 109.62780 * 350.89320 * 25 9 7 45 45 H 1.09003 * 109.62705 * 111.47023 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2021 0.0058 8 1 3.0171 -1.2426 0.3945 9 7 1.4184 -2.3369 -0.4815 10 6 0.3852 -2.2606 -1.5255 11 6 0.7747 -3.2215 -2.6601 12 7 0.9974 -4.5628 -2.1040 13 6 1.2001 -5.5491 -3.1736 14 6 0.1440 -5.3456 -4.2619 15 7 0.3457 -6.3296 -5.3283 16 6 -0.4725 -6.3400 -6.3992 17 8 -1.3755 -5.5346 -6.4802 18 6 -0.2646 -7.3519 -7.4965 19 1 0.7723 -7.6224 -7.6961 20 6 -1.3238 -8.4437 -7.6606 21 6 -1.2262 -7.3119 -8.6858 22 6 -1.1657 -7.1419 -10.2050 23 6 -2.1505 -6.3103 -9.3808 24 6 2.1245 -4.5688 -1.1619 25 6 1.7946 -3.6636 0.0297 26 1 -0.4850 -0.8358 0.0848 27 1 -0.5787 -2.5529 -1.1088 28 1 0.3275 -1.2423 -1.9099 29 1 1.6882 -2.8705 -3.1401 30 1 -0.0299 -3.2610 -3.3943 31 1 2.1936 -5.4205 -3.6029 32 1 1.1092 -6.5546 -2.7627 33 1 -0.8496 -5.4742 -3.8325 34 1 0.2348 -4.3401 -4.6728 35 1 1.0687 -6.9731 -5.2640 36 1 -0.9838 -9.4324 -7.9686 37 1 -2.1708 -8.4304 -6.9746 38 1 -0.2980 -6.6291 -10.6200 39 1 -1.5750 -7.9450 -10.8179 40 1 -3.2077 -6.5662 -9.4514 41 1 -1.9310 -5.2503 -9.2530 42 1 3.0192 -4.1991 -1.6628 43 1 2.2989 -5.5853 -0.8092 44 1 2.6692 -3.5733 0.6740 45 1 0.9636 -4.0881 0.5931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752374530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:37 Heat of formation + Delta-G solvation = 58.210777 kcal Electronic energy + Delta-G solvation = -23289.424159 eV Core-core repulsion = 19923.773679 eV Total energy + Delta-G solvation = -3365.650479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.19013 -38.56159 -37.67474 -35.52827 -34.11180 -32.93385 -31.46687 -30.04425 -28.87801 -26.05280 -24.21313 -23.47158 -22.67090 -22.43082 -21.27277 -20.75129 -19.40039 -19.11632 -17.46838 -17.21614 -16.27548 -15.69823 -15.29873 -15.25193 -14.82967 -14.57701 -14.31395 -14.17171 -13.81210 -13.60844 -13.46795 -13.21250 -12.80123 -12.57806 -12.01970 -11.83805 -11.76126 -11.65973 -11.31000 -10.83400 -10.70111 -10.53797 -10.48903 -10.44083 -10.31796 -10.23080 -10.11148 -9.98671 -9.87836 -9.29973 -9.13131 -8.39937 -7.98186 -6.85210 -6.04783 -3.21867 2.32322 2.81025 3.40246 3.50195 3.51051 3.53493 3.71878 3.95877 4.29167 4.44479 4.51866 4.61587 4.74331 4.87193 5.07092 5.11843 5.21789 5.25184 5.31905 5.32720 5.36271 5.41256 5.43833 5.59863 5.67346 5.72453 5.79937 5.88609 5.90470 5.95019 6.00547 6.07516 6.18415 6.26811 6.40353 6.51167 6.76185 6.96069 7.17678 7.32557 7.43629 7.50824 8.00723 8.10535 8.59089 9.12979 9.86035 10.32873 11.23894 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025977 B = 0.002706 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.619620 B =10343.426361 C =11027.171740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.024 4.024 3 Si 1.065 2.935 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.351 4.351 8 H 0.055 0.945 9 N -0.602 5.602 10 C 0.158 3.842 11 C 0.031 3.969 12 N -0.529 5.529 13 C 0.046 3.954 14 C 0.115 3.885 15 N -0.726 5.726 16 C 0.538 3.462 17 O -0.530 6.530 18 C -0.142 4.142 19 H 0.123 0.877 20 C -0.100 4.100 21 C -0.202 4.202 22 C -0.130 4.130 23 C -0.113 4.113 24 C 0.045 3.955 25 C 0.150 3.850 26 H 0.270 0.730 27 H 0.026 0.974 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -18.547 -16.379 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.227 4.227 3 Si 0.895 3.105 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.480 4.480 8 H 0.073 0.927 9 N -0.327 5.327 10 C 0.032 3.968 11 C -0.098 4.098 12 N -0.254 5.254 13 C -0.083 4.083 14 C -0.008 4.008 15 N -0.378 5.378 16 C 0.324 3.676 17 O -0.406 6.406 18 C -0.163 4.163 19 H 0.141 0.859 20 C -0.137 4.137 21 C -0.203 4.203 22 C -0.167 4.167 23 C -0.150 4.150 24 C -0.084 4.084 25 C 0.024 3.976 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.233 0.767 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.174 -16.375 -16.196 23.032 hybrid contribution 1.518 -1.874 -0.195 2.419 sum 1.344 -18.249 -16.391 24.566 Atomic orbital electron populations 1.70777 1.06555 1.30434 1.47766 1.25874 0.96579 1.01475 0.98744 0.83523 0.74768 0.76086 0.76128 1.21031 1.21982 1.22139 1.19958 0.97159 0.88150 1.42760 0.92712 1.44197 1.46076 1.01438 1.40973 1.21112 0.91070 0.97290 0.87348 1.22994 0.99513 0.88652 0.98634 1.62000 1.41829 1.06420 1.15159 1.22234 0.96354 0.97734 0.91982 1.21563 1.00131 0.92231 0.86906 1.45902 1.34038 1.36575 1.21296 1.19662 0.81627 0.84327 0.81988 1.90726 1.31841 1.39631 1.78408 1.21963 0.97690 1.00614 0.96033 0.85882 1.22667 0.99025 0.92724 0.99322 1.21156 1.04436 1.03272 0.91437 1.22770 1.01857 1.02452 0.89590 1.22613 0.95972 0.96875 0.99515 1.22631 0.90910 0.99561 0.95285 1.20972 0.98015 0.86150 0.92494 0.91899 0.95569 0.90234 0.95205 0.91142 0.94897 0.90638 0.90435 0.90795 0.76736 0.87567 0.87995 0.88524 0.88319 0.88454 0.88082 0.95201 0.91822 0.92370 0.95768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.86 12.49 55.49 0.69 -27.16 16 2 C -0.02 -0.70 4.70 -17.43 -0.08 -0.78 16 3 Si 1.07 25.52 29.98 -169.99 -5.10 20.42 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.35 -9.95 9.52 -15.06 -0.14 -10.09 16 8 H 0.06 1.55 7.94 -52.49 -0.42 1.13 16 9 N -0.60 -15.46 2.88 -171.73 -0.49 -15.96 16 10 C 0.16 3.82 4.88 -3.36 -0.02 3.80 16 11 C 0.03 0.61 5.06 -3.46 -0.02 0.59 16 12 N -0.53 -9.19 4.78 -234.02 -1.12 -10.30 16 13 C 0.05 0.60 5.38 -3.83 -0.02 0.58 16 14 C 0.11 1.54 4.93 -4.05 -0.02 1.52 16 15 N -0.73 -7.81 5.56 -60.30 -0.33 -8.15 16 16 C 0.54 6.70 7.61 -10.98 -0.08 6.62 16 17 O -0.53 -8.87 16.24 5.56 0.09 -8.78 16 18 C -0.14 -1.29 6.19 -91.78 -0.57 -1.86 16 19 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.10 -0.79 10.24 -26.72 -0.27 -1.06 16 21 C -0.20 -1.90 5.05 -154.51 -0.78 -2.68 16 22 C -0.13 -0.97 10.53 -26.74 -0.28 -1.25 16 23 C -0.11 -1.07 10.16 -26.74 -0.27 -1.35 16 24 C 0.05 0.80 5.58 -3.70 -0.02 0.78 16 25 C 0.15 3.23 6.69 -3.60 -0.02 3.20 16 26 H 0.27 8.31 6.63 -40.82 -0.27 8.04 16 27 H 0.03 0.66 7.77 -51.93 -0.40 0.26 16 28 H 0.08 2.13 6.49 -51.93 -0.34 1.79 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.28 5.73 -51.93 -0.30 0.98 16 31 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.13 6.18 -51.93 -0.32 0.81 16 35 H 0.40 3.01 8.47 -40.82 -0.35 2.66 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 44 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -33.67 360.81 -10.94 -44.61 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.51 Total: 1.85 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.60 Total: -1.97 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -1.25 Total: -61.57 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.10 Total: 20.42 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.67 -10.94 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752374530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.820 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds