Wall clock time and date at job start Tue Mar 31 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00173 * 2 1 4 4 H 1.48498 * 109.47039 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47505 * 120.00044 * 3 2 1 6 6 H 1.48500 * 109.47041 * 240.00216 * 3 2 1 7 7 C 1.38812 * 120.00013 * 179.72279 * 2 1 3 8 8 H 1.08002 * 120.00278 * 204.54441 * 7 2 1 9 9 N 1.36943 * 119.99941 * 24.55014 * 7 2 1 10 10 C 1.47079 * 120.87941 * 28.09170 * 9 7 2 11 11 C 1.53699 * 108.27453 * 128.75912 * 10 9 7 12 12 N 1.46904 * 109.25686 * 54.08035 * 11 10 9 13 13 C 1.46897 * 110.99896 * 172.60975 * 12 11 10 14 14 C 1.52998 * 109.47320 * 314.29917 * 13 12 11 15 15 N 1.46495 * 109.47564 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00246 * 180.02562 * 15 14 13 17 17 O 1.21278 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00176 * 179.97438 * 16 15 14 19 19 H 1.09001 * 115.54598 * 325.72488 * 18 16 15 20 20 C 1.52998 * 117.49803 * 111.38918 * 18 16 15 21 21 C 1.52993 * 117.50134 * 180.02562 * 18 16 15 22 22 C 1.52985 * 138.58860 * 121.61739 * 21 18 16 23 23 C 1.52993 * 138.58787 * 23.40533 * 21 18 16 24 24 C 1.46902 * 111.26826 * 296.75645 * 12 11 10 25 25 C 1.47077 * 120.88054 * 208.37387 * 9 7 2 26 26 H 0.97003 * 119.99721 * 185.79577 * 1 2 3 27 27 H 1.08997 * 109.62876 * 248.52478 * 10 9 7 28 28 H 1.08996 * 109.63122 * 9.10902 * 10 9 7 29 29 H 1.09001 * 109.64699 * 294.07757 * 11 10 9 30 30 H 1.09000 * 109.44495 * 173.96227 * 11 10 9 31 31 H 1.08996 * 109.47177 * 74.30162 * 13 12 11 32 32 H 1.09003 * 109.47297 * 194.30502 * 13 12 11 33 33 H 1.09002 * 109.47147 * 300.00950 * 14 13 12 34 34 H 1.09004 * 109.46980 * 60.00021 * 14 13 12 35 35 H 0.97003 * 119.99841 * 359.97438 * 15 14 13 36 36 H 1.08999 * 117.50075 * 214.98118 * 20 18 16 37 37 H 1.09005 * 117.50009 * 359.97438 * 20 18 16 38 38 H 1.09002 * 117.50417 * 336.60191 * 22 21 18 39 39 H 1.09003 * 117.49785 * 121.61813 * 22 21 18 40 40 H 1.08996 * 117.49716 * 238.38525 * 23 21 18 41 41 H 1.08997 * 117.49796 * 23.37596 * 23 21 18 42 42 H 1.08996 * 109.49359 * 303.14506 * 24 12 11 43 43 H 1.09000 * 109.51506 * 183.07540 * 24 12 11 44 44 H 1.09004 * 109.62780 * 350.89320 * 25 9 7 45 45 H 1.09003 * 109.62705 * 111.47023 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2021 0.0058 8 1 3.0171 -1.2426 0.3945 9 7 1.4184 -2.3369 -0.4815 10 6 0.3852 -2.2606 -1.5255 11 6 0.7747 -3.2215 -2.6601 12 7 0.9974 -4.5628 -2.1040 13 6 1.2001 -5.5491 -3.1736 14 6 0.1440 -5.3456 -4.2619 15 7 0.3457 -6.3296 -5.3283 16 6 -0.4725 -6.3400 -6.3992 17 8 -1.3755 -5.5346 -6.4802 18 6 -0.2646 -7.3519 -7.4965 19 1 0.7723 -7.6224 -7.6961 20 6 -1.3238 -8.4437 -7.6606 21 6 -1.2262 -7.3119 -8.6858 22 6 -1.1657 -7.1419 -10.2050 23 6 -2.1505 -6.3103 -9.3808 24 6 2.1245 -4.5688 -1.1619 25 6 1.7946 -3.6636 0.0297 26 1 -0.4850 -0.8358 0.0848 27 1 -0.5787 -2.5529 -1.1088 28 1 0.3275 -1.2423 -1.9099 29 1 1.6882 -2.8705 -3.1401 30 1 -0.0299 -3.2610 -3.3943 31 1 2.1936 -5.4205 -3.6029 32 1 1.1092 -6.5546 -2.7627 33 1 -0.8496 -5.4742 -3.8325 34 1 0.2348 -4.3401 -4.6728 35 1 1.0687 -6.9731 -5.2640 36 1 -0.9838 -9.4324 -7.9686 37 1 -2.1708 -8.4304 -6.9746 38 1 -0.2980 -6.6291 -10.6200 39 1 -1.5750 -7.9450 -10.8179 40 1 -3.2077 -6.5662 -9.4514 41 1 -1.9310 -5.2503 -9.2530 42 1 3.0192 -4.1991 -1.6628 43 1 2.2989 -5.5853 -0.8092 44 1 2.6692 -3.5733 0.6740 45 1 0.9636 -4.0881 0.5931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752374530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:36 Heat of formation + Delta-G solvation = 34.684994 kcal Electronic energy + Delta-G solvation = -23290.444313 eV Core-core repulsion = 19923.773679 eV Total energy + Delta-G solvation = -3366.670634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12982 -40.01004 -38.53016 -37.05041 -35.53946 -33.69837 -33.20948 -31.80017 -30.28021 -27.69370 -25.59291 -24.83841 -24.10929 -23.30349 -22.56605 -21.60995 -20.91311 -20.11264 -19.40857 -18.18400 -17.38774 -16.78125 -16.51340 -16.08654 -15.98853 -15.90269 -15.74801 -15.62261 -15.43060 -15.17464 -15.01077 -14.72233 -14.18031 -13.57133 -13.50275 -13.04395 -12.79970 -12.66852 -12.54749 -12.46061 -12.38125 -12.17594 -12.08736 -11.90968 -11.72465 -11.30564 -11.22151 -11.12257 -10.96677 -10.81106 -10.52065 -10.18353 -9.42476 -8.94462 -8.28027 -5.44559 1.41720 1.55904 1.63911 1.82817 1.90710 2.63116 2.71621 2.77423 3.01737 3.19060 3.31572 3.49673 3.69566 3.77764 3.84524 3.97519 4.08002 4.14759 4.18212 4.34772 4.38438 4.45814 4.49052 4.53997 4.59514 4.71672 4.73451 4.75738 4.78409 4.80512 4.84924 4.90958 4.96776 4.99766 5.02923 5.07425 5.24789 5.27184 5.32097 5.77527 5.99125 6.09229 6.34891 6.50195 7.00949 7.20385 7.73184 8.20520 8.96830 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025977 B = 0.002706 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.619620 B =10343.426361 C =11027.171740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.078 4.078 3 Si 1.117 2.883 4 H -0.292 1.292 5 H -0.273 1.273 6 H -0.280 1.280 7 C -0.357 4.357 8 H 0.054 0.946 9 N -0.622 5.622 10 C 0.164 3.836 11 C 0.050 3.950 12 N -0.540 5.540 13 C 0.055 3.945 14 C 0.123 3.877 15 N -0.710 5.710 16 C 0.531 3.469 17 O -0.583 6.583 18 C -0.143 4.143 19 H 0.155 0.845 20 C -0.084 4.084 21 C -0.230 4.230 22 C -0.103 4.103 23 C -0.139 4.139 24 C 0.058 3.942 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.005 0.995 28 H 0.044 0.956 29 H 0.023 0.977 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.419 0.581 36 H 0.139 0.861 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.260 -21.334 -17.644 27.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.275 4.275 3 Si 0.941 3.059 4 H -0.218 1.218 5 H -0.198 1.198 6 H -0.206 1.206 7 C -0.487 4.487 8 H 0.072 0.928 9 N -0.347 5.347 10 C 0.038 3.962 11 C -0.079 4.079 12 N -0.266 5.266 13 C -0.072 4.072 14 C -0.001 4.001 15 N -0.363 5.363 16 C 0.319 3.681 17 O -0.462 6.462 18 C -0.163 4.163 19 H 0.173 0.827 20 C -0.121 4.121 21 C -0.230 4.230 22 C -0.140 4.140 23 C -0.176 4.176 24 C -0.071 4.071 25 C 0.018 3.982 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.256 0.744 36 H 0.157 0.843 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.138 0.862 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.123 0.877 44 H 0.079 0.921 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.078 -19.242 -17.460 26.066 hybrid contribution 0.800 -1.075 0.234 1.360 sum 2.878 -20.317 -17.226 26.792 Atomic orbital electron populations 1.70903 1.07631 1.29396 1.50579 1.27306 0.96619 1.05046 0.98488 0.82840 0.73817 0.71898 0.77368 1.21820 1.19818 1.20623 1.20244 0.97108 0.89389 1.41942 0.92848 1.44471 1.46126 1.02463 1.41675 1.20903 0.90163 0.96662 0.88467 1.22628 0.99455 0.89218 0.96597 1.61914 1.42261 1.05609 1.16770 1.22247 0.96791 0.97530 0.90658 1.21273 0.99426 0.91894 0.87536 1.45707 1.34274 1.36141 1.20147 1.20375 0.80748 0.84259 0.82706 1.90710 1.34109 1.41894 1.79531 1.22032 0.99615 1.00143 0.94550 0.82712 1.22778 0.97880 0.93571 0.97845 1.21460 1.04761 1.03984 0.92829 1.22842 1.00817 1.01767 0.88534 1.22587 0.96810 0.96006 1.02209 1.22472 0.90464 1.00588 0.93584 1.21163 0.97681 0.84953 0.94441 0.93700 0.97702 0.93757 0.95869 0.90075 0.93205 0.87650 0.92340 0.93097 0.74368 0.84295 0.89262 0.87831 0.86174 0.88228 0.90511 0.95461 0.87749 0.92126 0.96500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 12.49 21.65 0.27 -59.31 16 2 C -0.08 -4.60 4.70 84.86 0.40 -4.20 16 3 Si 1.12 52.03 29.98 68.60 2.06 54.09 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.36 -20.55 9.52 84.03 0.80 -19.75 16 8 H 0.05 3.03 7.94 -2.91 -0.02 3.01 16 9 N -0.62 -32.54 2.88 -697.24 -2.01 -34.54 16 10 C 0.16 8.26 4.88 86.50 0.42 8.68 16 11 C 0.05 1.98 5.06 86.54 0.44 2.42 16 12 N -0.54 -17.80 4.78 -894.31 -4.27 -22.07 16 13 C 0.06 1.28 5.38 86.30 0.46 1.75 16 14 C 0.12 3.14 4.93 86.38 0.43 3.56 16 15 N -0.71 -13.78 5.56 -463.07 -2.57 -16.35 16 16 C 0.53 12.71 7.61 87.66 0.67 13.38 16 17 O -0.58 -20.04 16.24 -3.02 -0.05 -20.09 16 18 C -0.14 -2.24 6.19 -11.54 -0.07 -2.31 16 19 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 20 C -0.08 -1.09 10.24 30.60 0.31 -0.78 16 21 C -0.23 -3.92 5.05 -52.18 -0.26 -4.19 16 22 C -0.10 -1.31 10.53 30.59 0.32 -0.99 16 23 C -0.14 -2.67 10.16 30.59 0.31 -2.36 16 24 C 0.06 1.90 5.58 86.38 0.48 2.38 16 25 C 0.14 6.06 6.69 86.35 0.58 6.64 16 26 H 0.25 16.41 6.63 -92.71 -0.61 15.80 16 27 H 0.00 0.27 7.77 -2.39 -0.02 0.25 16 28 H 0.04 2.50 6.49 -2.39 -0.02 2.49 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 3.01 5.73 -2.39 -0.01 2.99 16 31 H 0.05 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.55 6.18 -2.38 -0.01 1.53 16 35 H 0.42 4.78 8.47 -92.71 -0.79 3.99 16 36 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.10 2.63 8.11 -2.39 -0.02 2.61 16 44 H 0.06 2.49 7.95 -2.38 -0.02 2.47 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -77.20 360.81 -0.94 -78.14 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.34 Total: 15.90 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.29 Total: 4.24 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -8.58 Total: -132.28 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.05 Total: -20.09 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.06 Total: 54.09 kcal Total: -77.20 -0.94 -78.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752374530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.830 kcal (2) G-P(sol) polarization free energy of solvation -77.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds