Wall clock time and date at job start Tue Mar 31 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99613 * 2 1 4 4 H 1.48494 * 109.46862 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47266 * 300.00056 * 3 2 1 6 6 H 1.48500 * 109.46916 * 59.99988 * 3 2 1 7 7 C 1.38811 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99696 * 197.05410 * 7 2 1 9 9 N 1.36934 * 120.00022 * 17.04844 * 7 2 1 10 10 C 1.47079 * 120.88460 * 206.64554 * 9 7 2 11 11 C 1.53238 * 108.52098 * 231.16658 * 10 9 7 12 12 N 1.46893 * 109.33888 * 306.16571 * 11 10 9 13 13 C 1.46905 * 111.00181 * 187.25623 * 12 11 10 14 14 C 1.52997 * 109.47348 * 169.99892 * 13 12 11 15 15 N 1.46496 * 109.47157 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99965 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00406 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00026 * 179.97438 * 16 15 14 19 19 H 1.09003 * 115.55860 * 34.31248 * 18 16 15 20 20 C 1.52997 * 117.50127 * 248.62163 * 18 16 15 21 21 C 1.52995 * 117.49842 * 179.97438 * 18 16 15 22 22 C 1.52991 * 138.58976 * 336.60761 * 21 18 16 23 23 C 1.53008 * 60.02968 * 229.08994 * 22 21 18 24 24 C 1.46901 * 111.27030 * 63.10488 * 12 11 10 25 25 C 1.47076 * 120.88154 * 26.62230 * 9 7 2 26 26 H 0.96994 * 120.00590 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.63164 * 111.45176 * 10 9 7 28 28 H 1.09005 * 109.62584 * 350.87224 * 10 9 7 29 29 H 1.09000 * 109.49297 * 186.20688 * 11 10 9 30 30 H 1.09002 * 109.49470 * 66.12907 * 11 10 9 31 31 H 1.08996 * 109.47145 * 50.00161 * 13 12 11 32 32 H 1.09004 * 109.46863 * 290.00212 * 13 12 11 33 33 H 1.09004 * 109.47031 * 59.99850 * 14 13 12 34 34 H 1.08997 * 109.47168 * 300.00352 * 14 13 12 35 35 H 0.96998 * 120.00301 * 359.97438 * 15 14 13 36 36 H 1.09001 * 117.49416 * 145.02496 * 20 18 16 37 37 H 1.08999 * 117.51979 * 359.97438 * 20 18 16 38 38 H 1.09000 * 117.49823 * 336.58597 * 22 21 18 39 39 H 1.08995 * 117.49782 * 121.59163 * 22 21 18 40 40 H 1.08994 * 117.50214 * 107.49842 * 23 22 21 41 41 H 1.09004 * 117.49813 * 252.52585 * 23 22 21 42 42 H 1.08998 * 109.48758 * 56.85765 * 24 12 11 43 43 H 1.09003 * 109.49399 * 176.93275 * 24 12 11 44 44 H 1.08997 * 109.63264 * 248.54874 * 25 9 7 45 45 H 1.09001 * 109.63230 * 8.93242 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0547 -1.2227 0.2738 9 7 1.3709 -2.3618 -0.3487 10 6 1.8302 -3.6609 0.1656 11 6 2.0030 -4.6193 -1.0176 12 7 0.7565 -4.6641 -1.7934 13 6 0.8212 -5.6985 -2.8345 14 6 -0.5655 -5.8876 -3.4525 15 7 -0.5008 -6.9188 -4.4911 16 6 -1.6113 -7.2553 -5.1767 17 8 -2.6641 -6.7042 -4.9342 18 6 -1.5447 -8.3156 -6.2455 19 1 -0.8461 -9.1307 -6.0564 20 6 -1.7328 -7.8689 -7.6966 21 6 -2.8394 -8.6531 -6.9875 22 6 -4.3495 -8.5576 -6.7618 23 6 -3.7306 -9.8703 -7.2466 24 6 0.4428 -3.3517 -2.3741 25 6 0.2061 -2.3414 -1.2466 26 1 -0.4851 0.8399 -0.0004 27 1 1.0903 -4.0632 0.8576 28 1 2.7843 -3.5354 0.6775 29 1 2.2364 -5.6172 -0.6463 30 1 2.8154 -4.2685 -1.6542 31 1 1.1534 -6.6381 -2.3930 32 1 1.5251 -5.3918 -3.6082 33 1 -0.8977 -4.9480 -3.8941 34 1 -1.2693 -6.1943 -2.6788 35 1 0.3414 -7.3588 -4.6859 36 1 -1.1581 -8.3901 -8.4622 37 1 -1.9053 -6.8081 -7.8787 38 1 -4.7029 -8.5182 -5.7314 39 1 -4.9302 -7.9794 -7.4805 40 1 -3.6768 -10.6943 -6.5352 41 1 -3.9038 -10.1553 -8.2844 42 1 1.2769 -3.0186 -2.9918 43 1 -0.4553 -3.4302 -2.9867 44 1 -0.6899 -2.6167 -0.6904 45 1 0.0843 -1.3425 -1.6657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752374531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:38 Heat of formation + Delta-G solvation = 58.367125 kcal Electronic energy + Delta-G solvation = -23177.499430 eV Core-core repulsion = 19811.855731 eV Total energy + Delta-G solvation = -3365.643700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.13239 -38.37183 -37.62221 -35.35591 -33.94243 -32.90077 -31.42610 -29.94126 -28.97631 -26.14522 -24.23281 -23.08266 -22.65341 -22.53258 -21.32089 -20.71013 -19.34654 -19.09549 -17.28048 -16.78000 -16.15122 -15.66996 -15.27714 -15.11726 -14.90359 -14.54684 -14.35571 -14.13337 -13.64217 -13.51852 -13.42571 -12.95820 -12.71871 -12.54587 -11.99057 -11.74361 -11.64042 -11.43503 -11.28433 -11.06249 -10.75480 -10.51500 -10.44748 -10.40606 -10.31669 -10.28601 -10.05294 -9.86064 -9.75030 -9.60083 -9.07358 -8.50567 -7.89047 -6.66407 -5.77192 -3.18662 2.36540 2.85685 3.37569 3.43105 3.45244 3.47376 3.54054 3.98368 4.37313 4.47894 4.51038 4.56398 4.79529 4.97566 5.12690 5.18569 5.25396 5.33245 5.35559 5.38069 5.40406 5.42805 5.51849 5.63231 5.68871 5.82507 5.90351 5.91882 5.96893 6.07388 6.11014 6.20694 6.31749 6.37453 6.54047 6.68757 6.92325 7.23922 7.38941 7.54741 7.64161 7.70183 7.82071 8.15577 8.44175 9.21871 9.85320 10.43825 11.31625 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031312 B = 0.002551 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.008986 B =10974.011589 C =11388.533717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.045 3.955 14 C 0.121 3.879 15 N -0.726 5.726 16 C 0.538 3.462 17 O -0.531 6.531 18 C -0.141 4.141 19 H 0.123 0.877 20 C -0.101 4.101 21 C -0.203 4.203 22 C -0.113 4.113 23 C -0.130 4.130 24 C 0.031 3.969 25 C 0.177 3.823 26 H 0.254 0.746 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.398 0.602 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 -19.495 -14.568 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.084 4.084 14 C -0.002 4.002 15 N -0.378 5.378 16 C 0.324 3.676 17 O -0.407 6.407 18 C -0.163 4.163 19 H 0.141 0.859 20 C -0.138 4.138 21 C -0.203 4.203 22 C -0.150 4.150 23 C -0.167 4.167 24 C -0.098 4.098 25 C 0.051 3.949 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.599 -19.026 -14.016 23.774 hybrid contribution 1.630 0.837 -0.576 1.920 sum -0.969 -18.189 -14.592 23.339 Atomic orbital electron populations 1.70037 1.05202 1.25400 1.54057 1.25040 0.95315 0.98386 1.01075 0.86228 0.79275 0.84014 0.77291 1.20335 1.21579 1.21705 1.19226 0.92589 0.84786 1.41527 0.91597 1.44141 1.34272 1.01267 1.52252 1.20981 0.97840 0.86495 0.92539 1.22626 0.89291 0.99505 0.96889 1.61870 1.34724 1.05791 1.23093 1.22193 0.95037 0.96905 0.94224 1.21383 0.98073 0.90982 0.89782 1.45901 1.11503 1.41597 1.38800 1.19647 0.83649 0.82747 0.81593 1.90725 1.29434 1.53845 1.66654 1.21972 1.00486 1.00232 0.93567 0.85886 1.22674 0.98551 1.00540 0.92038 1.21171 0.89741 1.04673 1.04726 1.22610 0.91166 0.98471 1.02716 1.22782 1.00540 0.91239 1.02138 1.22997 0.98822 0.89190 0.98749 1.20867 0.89007 0.96616 0.88395 0.93631 0.95587 0.92543 0.91978 0.95351 0.90895 0.94997 0.91108 0.90478 0.76795 0.87583 0.87995 0.88089 0.88482 0.88535 0.88351 0.95602 0.91784 0.95467 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 11.15 55.49 0.62 -25.94 16 2 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 3 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -6.98 9.63 -15.06 -0.15 -7.13 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -15.26 3.04 -172.02 -0.52 -15.78 16 10 C 0.15 3.16 6.69 -3.60 -0.02 3.13 16 11 C 0.05 0.81 5.62 -3.71 -0.02 0.79 16 12 N -0.53 -9.29 4.63 -234.32 -1.08 -10.38 16 13 C 0.05 0.61 5.08 -3.82 -0.02 0.59 16 14 C 0.12 1.64 5.61 -4.05 -0.02 1.62 16 15 N -0.73 -7.91 5.56 -60.30 -0.33 -8.24 16 16 C 0.54 6.75 7.61 -10.98 -0.08 6.67 16 17 O -0.53 -8.94 16.24 5.56 0.09 -8.85 16 18 C -0.14 -1.29 6.19 -91.77 -0.57 -1.86 16 19 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 20 C -0.10 -0.82 10.24 -26.71 -0.27 -1.09 16 21 C -0.20 -1.91 5.06 -154.46 -0.78 -2.69 16 22 C -0.11 -1.07 10.16 -26.73 -0.27 -1.34 16 23 C -0.13 -0.96 10.54 -26.69 -0.28 -1.24 16 24 C 0.03 0.62 5.46 -3.70 -0.02 0.60 16 25 C 0.18 4.35 5.42 -3.61 -0.02 4.33 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.15 7.95 -51.93 -0.41 0.73 16 29 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 32 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.07 1.09 6.40 -51.93 -0.33 0.76 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.40 3.06 8.47 -40.82 -0.35 2.72 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 2.42 6.11 -51.93 -0.32 2.10 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -32.83 362.84 -11.01 -43.85 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.60 Total: 0.77 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.62 Total: 2.30 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -1.32 Total: -60.34 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.83 -11.01 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752374531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.213 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds