Wall clock time and date at job start Tue Mar 31 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99613 * 2 1 4 4 H 1.48494 * 109.46862 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47266 * 300.00056 * 3 2 1 6 6 H 1.48500 * 109.46916 * 59.99988 * 3 2 1 7 7 C 1.38811 * 120.00376 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99696 * 197.05410 * 7 2 1 9 9 N 1.36934 * 120.00022 * 17.04844 * 7 2 1 10 10 C 1.47079 * 120.88460 * 206.64554 * 9 7 2 11 11 C 1.53238 * 108.52098 * 231.16658 * 10 9 7 12 12 N 1.46893 * 109.33888 * 306.16571 * 11 10 9 13 13 C 1.46905 * 111.00181 * 187.25623 * 12 11 10 14 14 C 1.52997 * 109.47348 * 169.99892 * 13 12 11 15 15 N 1.46496 * 109.47157 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99965 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00406 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00026 * 179.97438 * 16 15 14 19 19 H 1.09003 * 115.55860 * 34.31248 * 18 16 15 20 20 C 1.52997 * 117.50127 * 248.62163 * 18 16 15 21 21 C 1.52995 * 117.49842 * 179.97438 * 18 16 15 22 22 C 1.52991 * 138.58976 * 336.60761 * 21 18 16 23 23 C 1.53008 * 60.02968 * 229.08994 * 22 21 18 24 24 C 1.46901 * 111.27030 * 63.10488 * 12 11 10 25 25 C 1.47076 * 120.88154 * 26.62230 * 9 7 2 26 26 H 0.96994 * 120.00590 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.63164 * 111.45176 * 10 9 7 28 28 H 1.09005 * 109.62584 * 350.87224 * 10 9 7 29 29 H 1.09000 * 109.49297 * 186.20688 * 11 10 9 30 30 H 1.09002 * 109.49470 * 66.12907 * 11 10 9 31 31 H 1.08996 * 109.47145 * 50.00161 * 13 12 11 32 32 H 1.09004 * 109.46863 * 290.00212 * 13 12 11 33 33 H 1.09004 * 109.47031 * 59.99850 * 14 13 12 34 34 H 1.08997 * 109.47168 * 300.00352 * 14 13 12 35 35 H 0.96998 * 120.00301 * 359.97438 * 15 14 13 36 36 H 1.09001 * 117.49416 * 145.02496 * 20 18 16 37 37 H 1.08999 * 117.51979 * 359.97438 * 20 18 16 38 38 H 1.09000 * 117.49823 * 336.58597 * 22 21 18 39 39 H 1.08995 * 117.49782 * 121.59163 * 22 21 18 40 40 H 1.08994 * 117.50214 * 107.49842 * 23 22 21 41 41 H 1.09004 * 117.49813 * 252.52585 * 23 22 21 42 42 H 1.08998 * 109.48758 * 56.85765 * 24 12 11 43 43 H 1.09003 * 109.49399 * 176.93275 * 24 12 11 44 44 H 1.08997 * 109.63264 * 248.54874 * 25 9 7 45 45 H 1.09001 * 109.63230 * 8.93242 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0547 -1.2227 0.2738 9 7 1.3709 -2.3618 -0.3487 10 6 1.8302 -3.6609 0.1656 11 6 2.0030 -4.6193 -1.0176 12 7 0.7565 -4.6641 -1.7934 13 6 0.8212 -5.6985 -2.8345 14 6 -0.5655 -5.8876 -3.4525 15 7 -0.5008 -6.9188 -4.4911 16 6 -1.6113 -7.2553 -5.1767 17 8 -2.6641 -6.7042 -4.9342 18 6 -1.5447 -8.3156 -6.2455 19 1 -0.8461 -9.1307 -6.0564 20 6 -1.7328 -7.8689 -7.6966 21 6 -2.8394 -8.6531 -6.9875 22 6 -4.3495 -8.5576 -6.7618 23 6 -3.7306 -9.8703 -7.2466 24 6 0.4428 -3.3517 -2.3741 25 6 0.2061 -2.3414 -1.2466 26 1 -0.4851 0.8399 -0.0004 27 1 1.0903 -4.0632 0.8576 28 1 2.7843 -3.5354 0.6775 29 1 2.2364 -5.6172 -0.6463 30 1 2.8154 -4.2685 -1.6542 31 1 1.1534 -6.6381 -2.3930 32 1 1.5251 -5.3918 -3.6082 33 1 -0.8977 -4.9480 -3.8941 34 1 -1.2693 -6.1943 -2.6788 35 1 0.3414 -7.3588 -4.6859 36 1 -1.1581 -8.3901 -8.4622 37 1 -1.9053 -6.8081 -7.8787 38 1 -4.7029 -8.5182 -5.7314 39 1 -4.9302 -7.9794 -7.4805 40 1 -3.6768 -10.6943 -6.5352 41 1 -3.9038 -10.1553 -8.2844 42 1 1.2769 -3.0186 -2.9918 43 1 -0.4553 -3.4302 -2.9867 44 1 -0.6899 -2.6167 -0.6904 45 1 0.0843 -1.3425 -1.6657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752374531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:38 Heat of formation + Delta-G solvation = 35.727156 kcal Electronic energy + Delta-G solvation = -23178.481173 eV Core-core repulsion = 19811.855731 eV Total energy + Delta-G solvation = -3366.625442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07104 -39.80818 -38.48926 -36.80784 -35.41688 -33.66315 -33.21235 -31.67174 -30.37094 -27.80012 -25.49580 -24.54797 -24.17536 -23.28239 -22.58365 -21.58080 -20.85251 -20.08902 -18.76478 -18.11171 -17.32741 -16.85290 -16.62701 -16.16320 -15.92618 -15.81368 -15.61417 -15.41288 -15.30004 -14.98352 -14.95643 -14.61901 -14.11124 -13.51754 -13.22958 -13.03052 -12.85985 -12.70587 -12.65479 -12.53801 -12.36647 -12.21815 -12.04954 -11.87584 -11.57719 -11.44084 -11.20099 -11.10103 -10.94454 -10.77709 -10.61496 -10.12845 -9.32086 -8.70795 -7.89144 -5.34345 1.44932 1.45093 1.46243 1.57339 1.94758 2.49457 2.73714 2.80741 3.11413 3.26620 3.33602 3.65849 3.77782 3.83688 3.88487 4.04469 4.12235 4.28155 4.33101 4.44084 4.48651 4.52874 4.60607 4.64031 4.69406 4.74831 4.77165 4.81367 4.81706 4.90789 4.97799 5.01572 5.02488 5.04673 5.18628 5.26777 5.34703 5.37775 5.59897 5.65564 6.12035 6.21266 6.35606 6.54697 7.11032 7.24460 7.82071 8.36458 9.18002 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031312 B = 0.002551 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.008986 B =10974.011589 C =11388.533717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.261 4.261 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.141 3.859 11 C 0.058 3.942 12 N -0.544 5.544 13 C 0.056 3.944 14 C 0.130 3.870 15 N -0.710 5.710 16 C 0.531 3.469 17 O -0.583 6.583 18 C -0.141 4.141 19 H 0.157 0.843 20 C -0.088 4.088 21 C -0.230 4.230 22 C -0.139 4.139 23 C -0.102 4.102 24 C 0.051 3.949 25 C 0.185 3.815 26 H 0.250 0.750 27 H 0.014 0.986 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.418 0.582 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.024 0.976 43 H 0.073 0.927 44 H -0.006 1.006 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -22.001 -16.200 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.071 4.071 12 N -0.269 5.269 13 C -0.072 4.072 14 C 0.005 3.995 15 N -0.362 5.362 16 C 0.319 3.681 17 O -0.463 6.463 18 C -0.162 4.162 19 H 0.174 0.826 20 C -0.125 4.125 21 C -0.230 4.230 22 C -0.176 4.176 23 C -0.138 4.138 24 C -0.079 4.079 25 C 0.058 3.942 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.048 0.952 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.256 0.744 36 H 0.156 0.844 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.012 0.988 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.172 -21.589 -15.659 26.670 hybrid contribution 0.855 1.566 -0.012 1.785 sum 0.684 -20.023 -15.671 25.435 Atomic orbital electron populations 1.70207 1.06798 1.25815 1.55638 1.25857 0.96082 1.01717 1.01423 0.85166 0.78645 0.79645 0.76748 1.18823 1.21716 1.21948 1.19591 0.92973 0.85900 1.40675 0.91131 1.44435 1.34223 1.02382 1.52892 1.21181 0.97576 0.85460 0.94248 1.22475 0.89053 1.00315 0.95236 1.61747 1.35198 1.05242 1.24759 1.22180 0.94858 0.96581 0.93610 1.21098 0.97947 0.90667 0.89755 1.45705 1.12230 1.40679 1.37633 1.20364 0.83007 0.82855 0.81896 1.90708 1.31441 1.55861 1.68305 1.22038 1.01315 0.99969 0.92847 0.82555 1.22774 0.97795 0.99950 0.91939 1.21473 0.89579 1.06297 1.05669 1.22593 0.92074 1.01200 1.01732 1.22860 0.97500 0.90122 1.03367 1.22594 0.99251 0.89477 0.96549 1.20595 0.87880 0.96363 0.89319 0.94115 0.96755 0.91736 0.88030 0.95218 0.87835 0.93410 0.93465 0.92533 0.74422 0.84367 0.89502 0.90338 0.88373 0.87636 0.86272 0.95770 0.90875 0.98761 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 11.15 21.65 0.24 -57.08 16 2 C -0.06 -3.19 4.93 84.86 0.42 -2.77 16 3 Si 0.97 45.59 29.59 68.60 2.03 47.62 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.26 -14.65 9.63 84.03 0.81 -13.84 16 8 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 9 N -0.62 -31.98 3.04 -698.15 -2.12 -34.10 16 10 C 0.14 5.90 6.69 86.35 0.58 6.48 16 11 C 0.06 1.89 5.62 86.38 0.49 2.37 16 12 N -0.54 -18.17 4.63 -895.26 -4.14 -22.31 16 13 C 0.06 1.31 5.08 86.30 0.44 1.75 16 14 C 0.13 3.38 5.61 86.38 0.48 3.86 16 15 N -0.71 -14.03 5.56 -463.07 -2.57 -16.60 16 16 C 0.53 12.85 7.61 87.66 0.67 13.52 16 17 O -0.58 -20.25 16.24 -3.03 -0.05 -20.30 16 18 C -0.14 -2.24 6.19 -11.54 -0.07 -2.31 16 19 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 20 C -0.09 -1.20 10.24 30.61 0.31 -0.89 16 21 C -0.23 -3.95 5.06 -52.15 -0.26 -4.22 16 22 C -0.14 -2.66 10.16 30.59 0.31 -2.35 16 23 C -0.10 -1.28 10.54 30.62 0.32 -0.96 16 24 C 0.05 2.00 5.46 86.38 0.47 2.47 16 25 C 0.18 9.43 5.42 86.35 0.47 9.89 16 26 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 2.55 7.95 -2.38 -0.02 2.53 16 29 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.90 7.97 -2.39 -0.02 1.88 16 32 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 33 H 0.05 1.46 6.40 -2.38 -0.02 1.45 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.42 4.91 8.47 -92.71 -0.79 4.12 16 36 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 2.74 6.16 -2.39 -0.01 2.72 16 44 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 45 H 0.06 3.19 6.11 -2.39 -0.01 3.17 16 Total: -1.00 -75.18 362.84 -1.00 -76.18 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.19 Total: 13.57 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 5.43 Total: 13.02 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -8.60 Total: -130.09 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -75.18 -1.00 -76.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752374531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.907 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds