Wall clock time and date at job start Tue Mar 31 2020 07:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34663 * 125.79894 * 2 1 4 4 H 0.97000 * 124.85255 * 0.02562 * 3 2 1 5 5 C 1.36450 * 110.29345 * 180.29497 * 3 2 1 6 6 C 1.34488 * 108.85901 * 359.74726 * 5 3 2 7 7 C 1.36771 * 125.80410 * 179.86387 * 2 1 3 8 8 C 1.47259 * 126.94038 * 359.97438 * 7 2 1 9 9 O 1.21634 * 120.00294 * 359.70267 * 8 7 2 10 10 N 1.34777 * 119.99966 * 179.70936 * 8 7 2 11 11 C 1.46498 * 119.99882 * 179.72284 * 10 8 7 12 12 C 1.53003 * 109.47029 * 180.27188 * 11 10 8 13 13 C 1.53002 * 109.46926 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46846 * 179.97438 * 13 12 11 15 15 C 1.36937 * 119.99919 * 270.00036 * 14 13 12 16 16 H 1.08009 * 119.99414 * 141.91860 * 15 14 13 17 17 C 1.38806 * 120.00285 * 321.91145 * 15 14 13 18 18 N 1.31621 * 120.00113 * 338.46316 * 17 15 14 19 19 Si 1.86803 * 120.00035 * 158.45681 * 17 15 14 20 20 H 1.48503 * 109.47070 * 90.00374 * 19 17 15 21 21 H 1.48493 * 109.47346 * 210.00425 * 19 17 15 22 22 H 1.48501 * 109.47173 * 330.00432 * 19 17 15 23 23 C 1.46497 * 119.99707 * 90.00171 * 14 13 12 24 24 C 1.53002 * 109.46889 * 122.23853 * 23 14 13 25 25 C 1.52995 * 109.47117 * 242.23879 * 23 14 13 26 26 H 1.09008 * 109.47344 * 270.13312 * 1 2 3 27 27 H 1.09000 * 109.47582 * 30.13083 * 1 2 3 28 28 H 1.09004 * 109.47190 * 150.13281 * 1 2 3 29 29 H 1.07999 * 125.56538 * 179.76994 * 5 3 2 30 30 H 1.07996 * 126.83207 * 180.02562 * 6 5 3 31 31 H 0.96999 * 119.99740 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.47081 * 300.27276 * 11 10 8 33 33 H 1.09002 * 109.47055 * 60.27213 * 11 10 8 34 34 H 1.08998 * 109.47074 * 299.99531 * 12 11 10 35 35 H 1.08995 * 109.47029 * 60.00488 * 12 11 10 36 36 H 1.08998 * 109.47701 * 299.99986 * 13 12 11 37 37 H 1.09002 * 109.46973 * 60.00137 * 13 12 11 38 38 H 0.96993 * 119.99821 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47507 * 2.23934 * 23 14 13 40 40 H 1.09005 * 109.47017 * 65.40717 * 24 23 14 41 41 H 1.09000 * 109.46957 * 185.40241 * 24 23 14 42 42 H 1.09000 * 109.47720 * 305.40267 * 24 23 14 43 43 H 1.08996 * 109.47079 * 60.44099 * 25 23 14 44 44 H 1.09000 * 109.47041 * 180.43853 * 25 23 14 45 45 H 1.08998 * 109.47432 * 300.43798 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0066 6 6 3.6882 -0.6151 -0.0053 7 6 2.3071 -1.1092 0.0026 8 6 1.8703 -2.5155 0.0065 9 8 0.6839 -2.7839 0.0131 10 7 2.7850 -3.5053 0.0029 11 6 2.3505 -4.9044 0.0128 12 6 3.5768 -5.8193 0.0130 13 6 3.1230 -7.2804 0.0241 14 7 4.2972 -8.1564 0.0236 15 6 4.8401 -8.5730 -1.1625 16 1 5.9121 -8.6540 -1.2668 17 6 4.0129 -8.8914 -2.2307 18 7 2.7532 -9.2072 -2.0163 19 14 4.6873 -8.8716 -3.9726 20 1 5.2249 -10.2140 -4.3106 21 1 3.5995 -8.5210 -4.9207 22 1 5.7737 -7.8640 -4.0714 23 6 4.8905 -8.5868 1.2920 24 6 4.8997 -10.1153 1.3581 25 6 6.3250 -8.0635 1.3876 26 1 -0.3634 0.0024 1.0277 27 1 -0.3634 0.8888 -0.5158 28 1 -0.3634 -0.8912 -0.5118 29 1 4.4496 1.4061 -0.0116 30 1 4.5890 -1.2108 -0.0090 31 1 3.7311 -3.2913 -0.0027 32 1 1.7558 -5.0937 0.9065 33 1 1.7483 -5.1041 -0.8735 34 1 4.1715 -5.6300 -0.8807 35 1 4.1790 -5.6196 0.8993 36 1 2.5285 -7.4695 0.9179 37 1 2.5205 -7.4804 -0.8620 38 1 2.1751 -9.4293 -2.7627 39 1 4.3034 -8.1908 2.1207 40 1 5.5639 -10.5083 0.5883 41 1 5.2516 -10.4345 2.3391 42 1 3.8902 -10.4923 1.1941 43 1 6.3178 -6.9743 1.3484 44 1 6.7690 -8.3902 2.3279 45 1 6.9102 -8.4532 0.5547 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753284482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:15 Heat of formation + Delta-G solvation = -10.367411 kcal Electronic energy + Delta-G solvation = -23401.421739 eV Core-core repulsion = 20032.797486 eV Total energy + Delta-G solvation = -3368.624253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13180 -40.07842 -38.45868 -36.26189 -34.26126 -33.28964 -32.42817 -31.89932 -30.35396 -27.71655 -27.60730 -26.79656 -25.02158 -23.11600 -22.37412 -21.47411 -21.28394 -20.31868 -18.56623 -18.14368 -16.98219 -16.91223 -16.71312 -16.50283 -15.88956 -15.76465 -15.35584 -14.73335 -14.62120 -14.52467 -14.29581 -14.06437 -13.96849 -13.59843 -13.41037 -13.26644 -13.22020 -13.12227 -12.81625 -12.69678 -12.47460 -12.44472 -12.32903 -12.11356 -11.88699 -11.68964 -11.29285 -11.22225 -10.85932 -10.43796 -10.10918 -9.70271 -9.09347 -8.45821 -7.74425 -5.35968 0.76371 1.45657 1.49757 1.56473 1.57302 2.16916 2.53594 2.59515 2.61606 3.32466 3.64901 3.93974 4.05923 4.21341 4.29147 4.30397 4.38305 4.42853 4.56116 4.66061 4.68741 4.72390 4.76218 4.83357 4.98639 4.99226 5.01190 5.07936 5.12945 5.18219 5.22740 5.25003 5.31539 5.51448 5.56711 5.64396 5.70934 5.77993 5.80746 5.91224 5.99803 6.56259 6.64975 6.76541 7.26477 7.38991 7.97113 8.50049 9.21147 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003313 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.359573 B = 8450.413056 C = 8923.865129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.537 5.537 4 H 0.434 0.566 5 C 0.000 4.000 6 C -0.190 4.190 7 C -0.272 4.272 8 C 0.577 3.423 9 O -0.595 6.595 10 N -0.714 5.714 11 C 0.136 3.864 12 C -0.120 4.120 13 C 0.152 3.848 14 N -0.594 5.594 15 C -0.247 4.247 16 H 0.056 0.944 17 C -0.035 4.035 18 N -0.917 5.917 19 Si 0.945 3.055 20 H -0.286 1.286 21 H -0.297 1.297 22 H -0.271 1.271 23 C 0.152 3.848 24 C -0.137 4.137 25 C -0.142 4.142 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.210 0.790 30 H 0.155 0.845 31 H 0.410 0.590 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.026 0.974 37 H 0.058 0.942 38 H 0.247 0.753 39 H 0.057 0.943 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 21.943 6.680 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.022 4.022 3 N -0.135 5.135 4 H 0.274 0.726 5 C -0.127 4.127 6 C -0.214 4.214 7 C -0.282 4.282 8 C 0.368 3.632 9 O -0.479 6.479 10 N -0.365 5.365 11 C 0.012 3.988 12 C -0.160 4.160 13 C 0.025 3.975 14 N -0.315 5.315 15 C -0.378 4.378 16 H 0.073 0.927 17 C -0.232 4.232 18 N -0.562 5.562 19 Si 0.774 3.226 20 H -0.213 1.213 21 H -0.224 1.224 22 H -0.196 1.196 23 C 0.046 3.954 24 C -0.196 4.196 25 C -0.201 4.201 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.227 0.773 30 H 0.173 0.827 31 H 0.246 0.754 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.751 21.806 6.591 22.848 hybrid contribution 0.275 -0.206 -1.235 1.282 sum 2.026 21.600 5.356 22.346 Atomic orbital electron populations 1.20529 0.86558 1.04179 1.03711 1.20476 0.94327 0.86145 1.01222 1.41591 1.06001 1.08611 1.57248 0.72595 1.22310 0.86432 0.96156 1.07830 1.22305 0.95046 0.95080 1.08944 1.20230 0.95419 0.91085 1.21504 1.17920 0.84941 0.85459 0.74856 1.90690 1.18260 1.85312 1.53599 1.45769 1.10261 1.05530 1.74931 1.21094 0.97292 0.79947 1.00502 1.22115 0.96094 0.96291 1.01520 1.20665 0.89576 0.87224 0.99990 1.44069 1.33096 1.53051 1.01235 1.19036 0.90694 1.38335 0.89756 0.92672 1.25760 0.96558 0.99039 1.01888 1.70136 1.07146 1.48368 1.30516 0.85636 0.77461 0.77879 0.81638 1.21283 1.22380 1.19559 1.20664 0.93989 0.92895 0.87853 1.21973 0.99749 0.97904 0.99959 1.22026 0.97155 1.00288 1.00584 0.90054 0.88828 0.91026 0.77346 0.82690 0.75428 0.92449 0.94073 0.92967 0.91455 0.95585 0.92374 0.94344 0.92437 0.94550 0.91640 0.95833 0.93399 0.91515 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.88 71.23 0.70 -1.07 16 2 C 0.10 2.09 7.17 41.78 0.30 2.39 16 3 N -0.54 -6.95 5.90 -182.72 -1.08 -8.03 16 4 H 0.43 2.19 8.96 -92.71 -0.83 1.36 16 5 C 0.00 0.00 11.89 83.12 0.99 0.99 16 6 C -0.19 -3.75 10.56 23.62 0.25 -3.50 16 7 C -0.27 -7.29 6.29 -19.04 -0.12 -7.41 16 8 C 0.58 19.67 7.81 86.61 0.68 20.34 16 9 O -0.60 -24.22 14.82 -4.14 -0.06 -24.28 16 10 N -0.71 -22.68 5.55 -466.51 -2.59 -25.27 16 11 C 0.14 4.98 5.67 86.38 0.49 5.47 16 12 C -0.12 -4.55 5.65 30.60 0.17 -4.38 16 13 C 0.15 7.07 5.27 86.38 0.46 7.53 16 14 N -0.59 -28.53 2.36 -678.04 -1.60 -30.13 16 15 C -0.25 -13.16 8.23 84.03 0.69 -12.46 16 16 H 0.06 2.94 6.95 -2.91 -0.02 2.92 16 17 C -0.04 -1.95 4.94 84.86 0.42 -1.53 16 18 N -0.92 -53.99 11.52 21.65 0.25 -53.74 16 19 Si 0.95 44.87 29.61 68.60 2.03 46.90 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.15 6.12 3.36 44.99 0.15 6.27 16 24 C -0.14 -5.49 9.03 71.98 0.65 -4.84 16 25 C -0.14 -4.87 9.20 71.98 0.66 -4.21 16 26 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.88 6.47 -2.38 -0.02 1.86 16 29 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.16 2.57 7.69 -2.91 -0.02 2.55 16 31 H 0.41 10.80 7.60 -92.71 -0.70 10.10 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.03 1.16 7.90 -2.39 -0.02 1.15 16 37 H 0.06 3.17 5.56 -2.39 -0.01 3.15 16 38 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.06 2.17 7.78 -2.39 -0.02 2.15 16 40 H 0.04 1.55 7.80 -2.38 -0.02 1.53 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.04 1.41 7.06 -2.39 -0.02 1.39 16 Total: -1.00 -72.04 367.61 2.89 -69.15 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.55 Total: 21.82 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 6.49 Total: 3.58 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -5.02 Total: -117.17 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.06 Total: -24.28 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -72.04 2.89 -69.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753284482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.779 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds