Wall clock time and date at job start Tue Mar 31 2020 07:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39835 * 126.45521 * 2 1 4 4 C 1.35450 * 107.86144 * 180.26103 * 3 2 1 5 5 N 1.35527 * 108.87524 * 359.74557 * 4 3 2 6 6 H 0.97002 * 125.68513 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64339 * 359.97438 * 5 4 3 8 8 C 1.46677 * 126.23270 * 180.02562 * 7 5 4 9 9 O 1.21697 * 119.99534 * 180.02562 * 8 7 5 10 10 N 1.34770 * 120.00386 * 0.02562 * 8 7 5 11 11 C 1.46501 * 120.00255 * 179.72175 * 10 8 7 12 12 C 1.53003 * 109.47103 * 180.27651 * 11 10 8 13 13 C 1.53000 * 109.46905 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47166 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00115 * 270.00456 * 14 13 12 16 16 H 1.08001 * 119.99985 * 141.91672 * 15 14 13 17 17 C 1.38810 * 119.99843 * 321.90804 * 15 14 13 18 18 N 1.31618 * 120.00139 * 338.45441 * 17 15 14 19 19 Si 1.86802 * 119.99801 * 158.45758 * 17 15 14 20 20 H 1.48491 * 109.47280 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47094 * 120.00430 * 19 17 15 22 22 H 1.48502 * 109.46866 * 239.99942 * 19 17 15 23 23 C 1.46507 * 119.99775 * 89.99967 * 14 13 12 24 24 C 1.53000 * 109.46765 * 122.24333 * 23 14 13 25 25 C 1.53006 * 109.46887 * 242.23864 * 23 14 13 26 26 H 1.08997 * 109.47006 * 270.17582 * 1 2 3 27 27 H 1.09001 * 109.47075 * 30.18352 * 1 2 3 28 28 H 1.09005 * 109.46851 * 150.17718 * 1 2 3 29 29 H 1.08000 * 126.07026 * 0.02562 * 3 2 1 30 30 H 1.08009 * 125.56230 * 179.71801 * 4 3 2 31 31 H 0.97001 * 120.00130 * 0.02562 * 10 8 7 32 32 H 1.09000 * 109.47300 * 300.27823 * 11 10 8 33 33 H 1.09005 * 109.46603 * 60.27697 * 11 10 8 34 34 H 1.09000 * 109.47183 * 300.00244 * 12 11 10 35 35 H 1.08992 * 109.47106 * 60.00492 * 12 11 10 36 36 H 1.09000 * 109.47223 * 300.00003 * 13 12 11 37 37 H 1.08998 * 109.47252 * 59.99885 * 13 12 11 38 38 H 0.97003 * 120.00163 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.47227 * 2.24019 * 23 14 13 40 40 H 1.08995 * 109.47566 * 65.40422 * 24 23 14 41 41 H 1.09002 * 109.46531 * 185.40280 * 24 23 14 42 42 H 1.09000 * 109.47307 * 305.39647 * 24 23 14 43 43 H 1.09001 * 109.46694 * 60.44620 * 25 23 14 44 44 H 1.08997 * 109.46477 * 180.44131 * 25 23 14 45 45 H 1.08991 * 109.47312 * 300.44250 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6624 -0.0039 6 1 4.4191 -1.2244 -0.0067 7 6 2.3263 -1.1089 0.0040 8 6 1.8900 -2.5092 0.0090 9 8 0.7028 -2.7765 0.0155 10 7 2.8038 -3.4998 0.0066 11 6 2.3679 -4.8985 0.0178 12 6 3.5934 -5.8145 0.0192 13 6 3.1382 -7.2752 0.0302 14 7 4.3116 -8.1524 0.0310 15 6 4.8552 -8.5697 -1.1545 16 1 5.9271 -8.6517 -1.2579 17 6 4.0285 -8.8876 -2.2234 18 7 2.7685 -9.2023 -2.0099 19 14 4.7045 -8.8688 -3.9647 20 1 6.1386 -8.4849 -3.9349 21 1 4.5656 -10.2202 -4.5642 22 1 3.9462 -7.8856 -4.7794 23 6 4.9034 -8.5830 1.3001 24 6 4.9112 -10.1115 1.3666 25 6 6.3385 -8.0610 1.3967 26 1 -0.3633 0.0032 1.0276 27 1 -0.3633 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5111 29 1 2.0137 2.1549 0.0004 30 1 4.4973 1.3253 -0.0117 31 1 3.7501 -3.2868 0.0018 32 1 1.7727 -5.0865 0.9114 33 1 1.7658 -5.0985 -0.8686 34 1 4.1886 -5.6265 -0.8744 35 1 4.1955 -5.6146 0.9054 36 1 2.5428 -7.4635 0.9236 37 1 2.5363 -7.4749 -0.8563 38 1 2.1909 -9.4248 -2.7568 39 1 4.3160 -8.1862 2.1281 40 1 5.5755 -10.5053 0.5974 41 1 5.2621 -10.4306 2.3480 42 1 3.9014 -10.4875 1.2018 43 1 6.3322 -6.9717 1.3572 44 1 6.7813 -8.3880 2.3374 45 1 6.9239 -8.4514 0.5644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753285964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:31 Heat of formation + Delta-G solvation = 10.248212 kcal Electronic energy + Delta-G solvation = -23451.987603 eV Core-core repulsion = 20084.257310 eV Total energy + Delta-G solvation = -3367.730292 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42910 -38.95235 -36.79554 -35.09786 -32.77587 -32.42039 -31.59194 -29.91047 -28.68801 -26.97220 -26.20954 -25.26903 -23.42362 -21.96917 -20.94865 -20.67231 -19.55438 -19.10251 -18.57734 -16.38801 -15.78304 -15.59375 -15.37901 -15.00500 -14.50678 -14.18474 -13.80162 -13.78915 -13.69432 -13.22129 -13.01308 -12.85128 -12.70161 -12.46306 -12.33290 -11.72956 -11.65715 -11.52080 -11.46037 -11.32835 -10.99861 -10.78861 -10.66749 -10.42990 -10.22749 -9.98175 -9.82617 -9.61048 -9.50898 -8.95916 -8.92593 -8.48466 -8.24976 -6.56158 -5.79290 -3.37420 1.40827 2.60059 2.95120 3.28110 3.33704 3.42302 3.42769 3.43673 4.45943 4.83317 4.86324 5.07472 5.16968 5.22906 5.35248 5.63031 5.64741 5.73055 5.82328 5.84593 5.92425 5.99763 6.04930 6.15667 6.25660 6.30581 6.37129 6.40078 6.41755 6.56679 6.66115 6.69939 6.71949 6.78505 6.78690 6.84176 7.08459 7.18323 7.21393 7.33401 7.61341 7.65517 7.83665 8.27999 8.52865 9.19531 9.81986 10.41324 11.20759 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.003344 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.326080 B = 8371.702460 C = 8845.750068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.078 4.078 3 C -0.213 4.213 4 C 0.021 3.979 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.056 4.056 8 C 0.582 3.418 9 O -0.529 6.529 10 N -0.727 5.727 11 C 0.122 3.878 12 C -0.146 4.146 13 C 0.152 3.848 14 N -0.579 5.579 15 C -0.254 4.254 16 H 0.059 0.941 17 C 0.014 3.986 18 N -0.884 5.884 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.288 1.288 23 C 0.162 3.838 24 C -0.146 4.146 25 C -0.153 4.153 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.141 0.859 30 H 0.170 0.830 31 H 0.391 0.609 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.025 0.975 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.035 0.965 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 16.786 5.677 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.238 4.238 4 C -0.115 4.115 5 N -0.137 5.137 6 H 0.254 0.746 7 C -0.169 4.169 8 C 0.370 3.630 9 O -0.406 6.406 10 N -0.377 5.377 11 C -0.001 4.001 12 C -0.186 4.186 13 C 0.025 3.975 14 N -0.300 5.300 15 C -0.384 4.384 16 H 0.077 0.923 17 C -0.186 4.186 18 N -0.527 5.527 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.055 3.945 24 C -0.205 4.205 25 C -0.212 4.212 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.159 0.841 30 H 0.187 0.813 31 H 0.224 0.776 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.667 16.329 5.569 17.333 hybrid contribution 1.389 -0.052 -1.010 1.719 sum 3.056 16.277 4.559 17.178 Atomic orbital electron populations 1.20342 0.89334 1.02878 1.02152 1.19965 0.95930 0.90786 1.01999 1.20792 0.91867 0.98742 1.12393 1.21979 0.99525 0.82993 1.06964 1.41980 1.07272 1.07294 1.57164 0.74643 1.20386 0.83649 0.93853 1.18964 1.17090 0.86079 0.82983 0.76893 1.90809 1.15999 1.83271 1.50500 1.46087 1.08959 1.07320 1.75346 1.21511 0.98437 0.77985 1.02199 1.22506 0.95885 0.98893 1.01323 1.20776 0.90040 0.84926 1.01743 1.43851 1.33087 1.52345 1.00670 1.18924 0.90842 1.39984 0.88683 0.92302 1.25170 0.96263 0.98260 0.98954 1.70008 1.06080 1.46419 1.30150 0.86433 0.78678 0.77379 0.85513 1.20200 1.21676 1.21498 1.20416 0.92387 0.92765 0.88919 1.22059 1.01866 0.98002 0.98528 1.22179 0.99369 1.00029 0.99668 0.91615 0.92153 0.90053 0.84080 0.81303 0.77616 0.91754 0.91256 0.91739 0.93329 0.95638 0.88757 0.93625 0.93727 0.92774 0.95282 0.92975 0.94001 0.94589 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 9.83 36.01 0.35 -0.73 16 2 C -0.08 -0.99 6.21 -104.16 -0.65 -1.64 16 3 C -0.21 -2.15 10.76 -39.98 -0.43 -2.58 16 4 C 0.02 0.18 11.89 -16.91 -0.20 -0.02 16 5 N -0.54 -5.09 5.99 -9.39 -0.06 -5.14 16 6 H 0.42 2.78 8.19 -40.82 -0.33 2.44 16 7 C -0.06 -0.73 7.06 -81.98 -0.58 -1.31 16 8 C 0.58 9.05 7.79 -12.86 -0.10 8.95 16 9 O -0.53 -9.93 14.81 5.19 0.08 -9.86 16 10 N -0.73 -10.24 5.55 -61.62 -0.34 -10.58 16 11 C 0.12 2.01 5.67 -4.04 -0.02 1.99 16 12 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16 13 C 0.15 3.34 5.27 -4.04 -0.02 3.32 16 14 N -0.58 -13.48 2.36 -165.66 -0.39 -13.87 16 15 C -0.25 -6.55 8.23 -15.06 -0.12 -6.68 16 16 H 0.06 1.54 6.95 -52.49 -0.36 1.17 16 17 C 0.01 0.37 4.94 -17.43 -0.09 0.29 16 18 N -0.88 -24.69 11.52 55.49 0.64 -24.05 16 19 Si 0.89 21.03 29.61 -169.99 -5.03 16.00 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.16 3.28 3.36 -67.92 -0.23 3.05 16 24 C -0.15 -2.92 9.03 37.16 0.34 -2.58 16 25 C -0.15 -2.74 9.20 37.16 0.34 -2.39 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.14 6.49 -51.93 -0.34 0.81 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.39 4.39 7.60 -40.82 -0.31 4.08 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.03 0.54 7.90 -51.93 -0.41 0.13 16 37 H 0.09 2.39 5.56 -51.93 -0.29 2.10 16 38 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.04 0.86 7.78 -51.93 -0.40 0.45 16 40 H 0.05 1.15 7.80 -51.93 -0.40 0.74 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 1.03 7.06 -51.93 -0.37 0.67 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -30.94 367.23 -8.56 -39.50 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.43 Total: 5.55 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.56 Total: -3.08 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.15 Total: -53.65 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.94 -8.56 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753285964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.749 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds