Wall clock time and date at job start Tue Mar 31 2020 07:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39835 * 126.45521 * 2 1 4 4 C 1.35450 * 107.86144 * 180.26103 * 3 2 1 5 5 N 1.35527 * 108.87524 * 359.74557 * 4 3 2 6 6 H 0.97002 * 125.68513 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64339 * 359.97438 * 5 4 3 8 8 C 1.46677 * 126.23270 * 180.02562 * 7 5 4 9 9 O 1.21697 * 119.99534 * 180.02562 * 8 7 5 10 10 N 1.34770 * 120.00386 * 0.02562 * 8 7 5 11 11 C 1.46501 * 120.00255 * 179.72175 * 10 8 7 12 12 C 1.53003 * 109.47103 * 180.27651 * 11 10 8 13 13 C 1.53000 * 109.46905 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47166 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00115 * 270.00456 * 14 13 12 16 16 H 1.08001 * 119.99985 * 141.91672 * 15 14 13 17 17 C 1.38810 * 119.99843 * 321.90804 * 15 14 13 18 18 N 1.31618 * 120.00139 * 338.45441 * 17 15 14 19 19 Si 1.86802 * 119.99801 * 158.45758 * 17 15 14 20 20 H 1.48491 * 109.47280 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47094 * 120.00430 * 19 17 15 22 22 H 1.48502 * 109.46866 * 239.99942 * 19 17 15 23 23 C 1.46507 * 119.99775 * 89.99967 * 14 13 12 24 24 C 1.53000 * 109.46765 * 122.24333 * 23 14 13 25 25 C 1.53006 * 109.46887 * 242.23864 * 23 14 13 26 26 H 1.08997 * 109.47006 * 270.17582 * 1 2 3 27 27 H 1.09001 * 109.47075 * 30.18352 * 1 2 3 28 28 H 1.09005 * 109.46851 * 150.17718 * 1 2 3 29 29 H 1.08000 * 126.07026 * 0.02562 * 3 2 1 30 30 H 1.08009 * 125.56230 * 179.71801 * 4 3 2 31 31 H 0.97001 * 120.00130 * 0.02562 * 10 8 7 32 32 H 1.09000 * 109.47300 * 300.27823 * 11 10 8 33 33 H 1.09005 * 109.46603 * 60.27697 * 11 10 8 34 34 H 1.09000 * 109.47183 * 300.00244 * 12 11 10 35 35 H 1.08992 * 109.47106 * 60.00492 * 12 11 10 36 36 H 1.09000 * 109.47223 * 300.00003 * 13 12 11 37 37 H 1.08998 * 109.47252 * 59.99885 * 13 12 11 38 38 H 0.97003 * 120.00163 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.47227 * 2.24019 * 23 14 13 40 40 H 1.08995 * 109.47566 * 65.40422 * 24 23 14 41 41 H 1.09002 * 109.46531 * 185.40280 * 24 23 14 42 42 H 1.09000 * 109.47307 * 305.39647 * 24 23 14 43 43 H 1.09001 * 109.46694 * 60.44620 * 25 23 14 44 44 H 1.08997 * 109.46477 * 180.44131 * 25 23 14 45 45 H 1.08991 * 109.47312 * 300.44250 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6624 -0.0039 6 1 4.4191 -1.2244 -0.0067 7 6 2.3263 -1.1089 0.0040 8 6 1.8900 -2.5092 0.0090 9 8 0.7028 -2.7765 0.0155 10 7 2.8038 -3.4998 0.0066 11 6 2.3679 -4.8985 0.0178 12 6 3.5934 -5.8145 0.0192 13 6 3.1382 -7.2752 0.0302 14 7 4.3116 -8.1524 0.0310 15 6 4.8552 -8.5697 -1.1545 16 1 5.9271 -8.6517 -1.2579 17 6 4.0285 -8.8876 -2.2234 18 7 2.7685 -9.2023 -2.0099 19 14 4.7045 -8.8688 -3.9647 20 1 6.1386 -8.4849 -3.9349 21 1 4.5656 -10.2202 -4.5642 22 1 3.9462 -7.8856 -4.7794 23 6 4.9034 -8.5830 1.3001 24 6 4.9112 -10.1115 1.3666 25 6 6.3385 -8.0610 1.3967 26 1 -0.3633 0.0032 1.0276 27 1 -0.3633 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5111 29 1 2.0137 2.1549 0.0004 30 1 4.4973 1.3253 -0.0117 31 1 3.7501 -3.2868 0.0018 32 1 1.7727 -5.0865 0.9114 33 1 1.7658 -5.0985 -0.8686 34 1 4.1886 -5.6265 -0.8744 35 1 4.1955 -5.6146 0.9054 36 1 2.5428 -7.4635 0.9236 37 1 2.5363 -7.4749 -0.8563 38 1 2.1909 -9.4248 -2.7568 39 1 4.3160 -8.1862 2.1281 40 1 5.5755 -10.5053 0.5974 41 1 5.2621 -10.4306 2.3480 42 1 3.9014 -10.4875 1.2018 43 1 6.3322 -6.9717 1.3572 44 1 6.7813 -8.3880 2.3374 45 1 6.9239 -8.4514 0.5644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753285964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:30 Heat of formation + Delta-G solvation = -8.898333 kcal Electronic energy + Delta-G solvation = -23452.817859 eV Core-core repulsion = 20084.257310 eV Total energy + Delta-G solvation = -3368.560549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27805 -40.14222 -38.50195 -36.46385 -34.31018 -33.65511 -33.07473 -31.06524 -30.10380 -28.01717 -27.74149 -26.92736 -24.99765 -23.06300 -22.46369 -21.54104 -21.30254 -20.14003 -19.50360 -18.19616 -17.05828 -16.88847 -16.64467 -16.59479 -15.91070 -15.76113 -15.29516 -14.84587 -14.61917 -14.57529 -14.48209 -14.11154 -13.84388 -13.59870 -13.32032 -13.25299 -13.19948 -13.15050 -12.86160 -12.75772 -12.56338 -12.49421 -12.34489 -12.13334 -11.91796 -11.71946 -11.33409 -11.26320 -11.04594 -10.47926 -10.24615 -9.69779 -9.11778 -8.49159 -7.77397 -5.39155 0.45459 1.42902 1.47923 1.55680 1.83994 2.06241 2.27022 2.32587 2.52550 3.29187 3.60056 3.87841 4.15100 4.21745 4.26688 4.30285 4.35637 4.41589 4.49494 4.63240 4.72039 4.79759 4.87560 4.87816 4.93361 4.96869 5.00344 5.07658 5.15301 5.16885 5.20409 5.22213 5.35264 5.46478 5.47047 5.61825 5.68168 5.75217 5.77513 5.88251 5.98046 6.46369 6.53445 6.62345 7.12458 7.23711 7.94001 8.46749 9.18182 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.003344 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.326080 B = 8371.702460 C = 8845.750068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.094 4.094 3 C -0.230 4.230 4 C 0.051 3.949 5 N -0.531 5.531 6 H 0.429 0.571 7 C -0.091 4.091 8 C 0.579 3.421 9 O -0.573 6.573 10 N -0.716 5.716 11 C 0.135 3.865 12 C -0.121 4.121 13 C 0.151 3.849 14 N -0.593 5.593 15 C -0.246 4.246 16 H 0.056 0.944 17 C -0.035 4.035 18 N -0.917 5.917 19 Si 0.944 3.056 20 H -0.266 1.266 21 H -0.296 1.296 22 H -0.294 1.294 23 C 0.152 3.848 24 C -0.138 4.138 25 C -0.141 4.141 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.163 0.837 30 H 0.216 0.784 31 H 0.407 0.593 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.058 0.942 38 H 0.247 0.753 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.064 0.936 42 H 0.022 0.978 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 19.193 6.728 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.254 4.254 4 C -0.086 4.086 5 N -0.128 5.128 6 H 0.269 0.731 7 C -0.203 4.203 8 C 0.369 3.631 9 O -0.453 6.453 10 N -0.367 5.367 11 C 0.010 3.990 12 C -0.161 4.161 13 C 0.024 3.976 14 N -0.314 5.314 15 C -0.377 4.377 16 H 0.074 0.926 17 C -0.232 4.232 18 N -0.561 5.561 19 Si 0.774 3.226 20 H -0.190 1.190 21 H -0.223 1.223 22 H -0.221 1.221 23 C 0.046 3.954 24 C -0.197 4.197 25 C -0.200 4.200 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.180 0.820 30 H 0.233 0.767 31 H 0.243 0.757 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.410 18.738 6.638 20.362 hybrid contribution 0.586 -0.738 -1.252 1.567 sum 4.996 18.000 5.386 19.442 Atomic orbital electron populations 1.20308 0.89795 1.02453 1.02067 1.20299 0.96258 0.91962 1.01834 1.21118 0.92188 0.99044 1.13042 1.22743 1.00499 0.82528 1.02871 1.41984 1.06406 1.08071 1.56322 0.73088 1.20005 0.85576 0.92353 1.22400 1.17484 0.85550 0.84181 0.75928 1.90782 1.17803 1.84119 1.52617 1.45836 1.09802 1.06011 1.75061 1.21163 0.97523 0.79331 1.00937 1.22128 0.96015 0.96254 1.01682 1.20667 0.89602 0.87242 1.00061 1.44079 1.33160 1.52965 1.01225 1.19074 0.90693 1.38259 0.89672 0.92601 1.25759 0.96557 0.99043 1.01865 1.70139 1.07161 1.48411 1.30431 0.85571 0.78502 0.76634 0.81929 1.18997 1.22303 1.22142 1.20671 0.94023 0.92861 0.87845 1.21978 0.99747 0.97975 0.99965 1.22024 0.97107 1.00316 1.00574 0.91573 0.90058 0.92883 0.81971 0.76747 0.75716 0.92056 0.93738 0.92772 0.91229 0.95547 0.92384 0.94336 0.92390 0.94547 0.91668 0.95854 0.93284 0.91566 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.16 9.83 71.24 0.70 -1.46 16 2 C -0.09 -2.30 6.21 -19.56 -0.12 -2.42 16 3 C -0.23 -3.94 10.76 22.01 0.24 -3.70 16 4 C 0.05 0.63 11.89 83.48 0.99 1.62 16 5 N -0.53 -8.44 5.99 -183.62 -1.10 -9.54 16 6 H 0.43 4.32 8.19 -92.71 -0.76 3.56 16 7 C -0.09 -2.30 7.06 40.35 0.28 -2.01 16 8 C 0.58 18.25 7.79 86.45 0.67 18.92 16 9 O -0.57 -22.59 14.81 -4.34 -0.06 -22.65 16 10 N -0.72 -19.92 5.55 -467.07 -2.59 -22.51 16 11 C 0.13 4.53 5.67 86.38 0.49 5.02 16 12 C -0.12 -4.23 5.65 30.60 0.17 -4.06 16 13 C 0.15 6.73 5.27 86.38 0.46 7.18 16 14 N -0.59 -27.52 2.36 -678.02 -1.60 -29.12 16 15 C -0.25 -12.72 8.23 84.03 0.69 -12.03 16 16 H 0.06 2.90 6.95 -2.91 -0.02 2.88 16 17 C -0.04 -1.89 4.94 84.86 0.42 -1.47 16 18 N -0.92 -52.97 11.52 21.65 0.25 -52.72 16 19 Si 0.94 43.93 29.61 68.60 2.03 45.97 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 C 0.15 5.90 3.36 44.99 0.15 6.05 16 24 C -0.14 -5.38 9.03 71.98 0.65 -4.73 16 25 C -0.14 -4.64 9.20 71.98 0.66 -3.97 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.58 6.49 -2.38 -0.02 1.57 16 29 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.22 0.67 8.06 -2.91 -0.02 0.64 16 31 H 0.41 8.50 7.60 -92.71 -0.70 7.80 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.03 1.14 7.90 -2.39 -0.02 1.12 16 37 H 0.06 3.06 5.56 -2.39 -0.01 3.05 16 38 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 39 H 0.06 2.10 7.78 -2.39 -0.02 2.08 16 40 H 0.04 1.51 7.80 -2.39 -0.02 1.50 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.04 1.34 7.06 -2.39 -0.02 1.33 16 Total: -1.00 -70.00 367.23 2.90 -67.09 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.48 Total: 20.58 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 6.46 Total: 2.92 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -5.04 Total: -113.90 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.06 Total: -22.65 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.97 kcal Total: -70.00 2.90 -67.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753285964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.194 kcal (2) G-P(sol) polarization free energy of solvation -69.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds