Wall clock time and date at job start Tue Mar 31 2020 07:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34489 * 125.57177 * 2 1 4 4 C 1.46684 * 106.33241 * 180.02562 * 3 2 1 5 5 C 1.47261 * 126.94131 * 179.97438 * 4 3 2 6 6 O 1.21630 * 120.00297 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00178 * 0.02711 * 5 4 3 8 8 C 1.46498 * 119.99869 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47590 * 35.00484 * 8 7 5 10 10 C 1.52999 * 109.47406 * 275.00244 * 8 7 5 11 11 C 1.53007 * 109.46631 * 155.00171 * 8 7 5 12 12 H 1.09000 * 109.46831 * 294.99851 * 11 8 7 13 13 C 1.52998 * 109.47211 * 55.00210 * 11 8 7 14 14 N 1.46506 * 109.46782 * 175.00227 * 11 8 7 15 15 C 1.36938 * 119.99589 * 155.00217 * 14 11 8 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 11 17 17 C 1.38815 * 119.99408 * 179.97438 * 15 14 11 18 18 N 1.31619 * 119.99480 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00486 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47176 * 89.99661 * 19 17 15 21 21 H 1.48498 * 109.47481 * 209.99740 * 19 17 15 22 22 H 1.48501 * 109.46931 * 329.99788 * 19 17 15 23 23 C 1.36765 * 106.11636 * 0.23883 * 4 3 2 24 24 C 1.50705 * 125.80167 * 179.71737 * 23 4 3 25 25 N 1.34664 * 108.39884 * 359.60964 * 23 4 3 26 26 C 1.46491 * 124.85587 * 180.13507 * 25 23 4 27 27 H 1.08996 * 109.47211 * 89.97461 * 1 2 3 28 28 H 1.08996 * 109.47102 * 209.98068 * 1 2 3 29 29 H 1.09001 * 109.46831 * 329.97771 * 1 2 3 30 30 H 1.08002 * 126.83045 * 359.97438 * 3 2 1 31 31 H 0.96993 * 119.99924 * 0.02562 * 7 5 4 32 32 H 1.08993 * 109.47017 * 60.00190 * 10 8 7 33 33 H 1.09000 * 109.47061 * 180.02562 * 10 8 7 34 34 H 1.09005 * 109.46852 * 299.99770 * 10 8 7 35 35 H 1.09001 * 109.47093 * 179.97438 * 13 11 8 36 36 H 1.09002 * 109.47121 * 299.99744 * 13 11 8 37 37 H 1.09002 * 109.46901 * 59.99641 * 13 11 8 38 38 H 0.96995 * 120.00050 * 334.72425 * 14 11 8 39 39 H 0.97000 * 120.00111 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.46906 * 90.03162 * 24 23 4 41 41 H 1.09000 * 109.46788 * 210.02550 * 24 23 4 42 42 H 1.08996 * 109.47364 * 330.03003 * 24 23 4 43 43 H 1.09000 * 109.47158 * 270.28610 * 26 25 23 44 44 H 1.09004 * 109.46885 * 30.28152 * 26 25 23 45 45 H 1.09003 * 109.47592 * 150.28343 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6106 -0.0006 5 6 4.8977 1.4302 -0.0014 6 8 5.9893 0.8936 -0.0023 7 7 4.8080 2.7750 -0.0010 8 6 6.0251 3.5903 -0.0012 9 1 6.7953 3.0934 -0.5911 10 6 6.5194 3.7693 1.4357 11 6 5.7209 4.9605 -0.6104 12 1 5.4543 4.8401 -1.6604 13 6 4.5548 5.6053 0.1414 14 7 6.9049 5.8167 -0.5022 15 6 7.0832 6.8524 -1.3801 16 1 6.3514 7.0379 -2.1523 17 6 8.2047 7.6639 -1.2772 18 7 8.3764 8.6591 -2.1213 19 14 9.4709 7.3427 0.0580 20 1 10.5026 6.4050 -0.4534 21 1 10.1150 8.6227 0.4477 22 1 8.8017 6.7450 1.2412 23 6 3.5998 -0.7550 -0.0064 24 6 4.7722 -1.7019 -0.0153 25 7 2.3008 -1.1099 -0.0005 26 6 1.8099 -2.4901 -0.0012 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 1.9629 2.1234 -0.0004 31 1 3.9376 3.2029 0.0001 32 1 6.7361 2.7932 1.8696 33 1 7.4247 4.3763 1.4355 34 1 5.7492 4.2664 2.0255 35 1 4.3384 6.5817 -0.2923 36 1 3.6740 4.9683 0.0609 37 1 4.8216 5.7256 1.1914 38 1 7.5603 5.6523 0.1936 39 1 9.1599 9.2265 -2.0493 40 1 5.0585 -1.9352 1.0103 41 1 4.4938 -2.6201 -0.5325 42 1 5.6122 -1.2353 -0.5298 43 1 1.6876 -2.8318 -1.0290 44 1 2.5270 -3.1310 0.5119 45 1 0.8498 -2.5346 0.5131 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755266656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:59 Heat of formation + Delta-G solvation = 18.016345 kcal Electronic energy + Delta-G solvation = -23767.678955 eV Core-core repulsion = 20400.285515 eV Total energy + Delta-G solvation = -3367.393441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60190 -39.23135 -36.85279 -33.91880 -33.11385 -32.79053 -31.67888 -29.72649 -29.29197 -28.50835 -26.83462 -25.03874 -24.35033 -23.01117 -21.66379 -20.04248 -19.35823 -18.74909 -17.74858 -17.04505 -16.03505 -15.70813 -15.39043 -14.85040 -14.54091 -14.23837 -13.98027 -13.82170 -13.58582 -13.52018 -13.23641 -13.21177 -12.73342 -12.66781 -12.61159 -12.50138 -12.43613 -12.08199 -11.88620 -11.65904 -11.55839 -11.43933 -11.02047 -10.84503 -10.49279 -10.26034 -9.94714 -9.60601 -9.48310 -8.91025 -8.82252 -8.60006 -8.09920 -7.25805 -5.74010 -3.09763 1.74083 2.23622 2.55773 3.41290 3.44636 3.49037 3.63497 3.74500 4.37735 4.47551 4.62576 4.63493 4.70833 4.86539 5.00332 5.08239 5.17946 5.23773 5.37530 5.38163 5.45661 5.51731 5.53090 5.54103 5.63587 5.73947 5.76960 5.88426 6.03395 6.09685 6.15670 6.25263 6.36593 6.48965 6.56637 6.68659 6.74705 6.90741 6.97734 7.06490 7.07318 7.92474 8.02336 8.44886 8.63361 9.23326 9.95701 10.15142 11.44284 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.029301 B = 0.003219 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.376519 B = 8697.527505 C = 9248.854205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.006 3.994 3 C -0.164 4.164 4 C -0.229 4.229 5 C 0.589 3.411 6 O -0.555 6.555 7 N -0.715 5.715 8 C 0.135 3.865 9 H 0.089 0.911 10 C -0.160 4.160 11 C 0.173 3.827 12 H 0.061 0.939 13 C -0.169 4.169 14 N -0.744 5.744 15 C -0.242 4.242 16 H 0.091 0.909 17 C 0.005 3.995 18 N -0.934 5.934 19 Si 0.881 3.119 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.101 3.899 24 C -0.092 4.092 25 N -0.444 5.444 26 C 0.067 3.933 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.398 0.602 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.363 0.637 39 H 0.259 0.741 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.492 -23.015 6.681 29.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.188 4.188 4 C -0.238 4.238 5 C 0.378 3.622 6 O -0.435 6.435 7 N -0.366 5.366 8 C 0.030 3.970 9 H 0.107 0.893 10 C -0.219 4.219 11 C 0.063 3.937 12 H 0.079 0.921 13 C -0.229 4.229 14 N -0.389 5.389 15 C -0.372 4.372 16 H 0.109 0.891 17 C -0.190 4.190 18 N -0.582 5.582 19 Si 0.711 3.289 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.015 4.015 24 C -0.150 4.150 25 N -0.121 5.121 26 C -0.075 4.075 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.162 0.838 31 H 0.234 0.766 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.198 0.802 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.863 -23.524 6.480 29.660 hybrid contribution 0.413 0.181 0.950 1.051 sum -16.450 -23.342 7.430 29.507 Atomic orbital electron populations 1.20314 0.87924 1.03112 1.02611 1.20178 0.93455 0.85555 1.10950 1.21803 0.90966 0.97626 1.08438 1.20164 0.93028 0.92179 1.18460 1.17332 0.87563 0.81834 0.75474 1.90715 1.28638 1.72507 1.51626 1.45948 1.09968 1.05584 1.75140 1.21271 0.86802 0.91922 0.97001 0.89330 1.22166 1.01575 1.01472 0.96673 1.20333 0.88166 0.87504 0.97713 0.92139 1.22494 0.97802 1.01285 1.01273 1.42805 1.23409 1.35081 1.37580 1.19063 1.05941 1.03906 1.08260 0.89125 1.24647 0.98151 0.97683 0.98569 1.69698 1.29803 1.20119 1.38567 0.86602 0.82502 0.77252 0.82507 1.20940 1.21737 1.20245 1.20275 0.84484 0.94156 1.02575 1.20551 0.94809 0.96379 1.03214 1.43428 1.05172 1.06314 1.57182 1.22051 1.01435 0.80602 1.03419 0.91061 0.91996 0.90032 0.83755 0.76626 0.92730 0.91618 0.92329 0.91987 0.94481 0.92973 0.80243 0.93068 0.90686 0.92177 0.87870 0.90766 0.89680 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.06 36.01 0.36 -0.13 16 2 C 0.01 0.06 6.85 -81.86 -0.56 -0.50 16 3 C -0.16 -1.86 10.45 -37.50 -0.39 -2.26 16 4 C -0.23 -3.15 6.29 -103.35 -0.65 -3.80 16 5 C 0.59 9.56 7.77 -12.59 -0.10 9.46 16 6 O -0.55 -10.49 14.48 5.25 0.08 -10.42 16 7 N -0.71 -10.84 4.98 -54.93 -0.27 -11.12 16 8 C 0.14 2.37 2.62 -67.93 -0.18 2.19 16 9 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 10 C -0.16 -2.71 9.00 37.16 0.33 -2.37 16 11 C 0.17 3.35 2.93 -67.92 -0.20 3.15 16 12 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 13 C -0.17 -2.85 9.01 37.16 0.33 -2.52 16 14 N -0.74 -17.70 4.84 -53.42 -0.26 -17.96 16 15 C -0.24 -6.84 10.41 -15.06 -0.16 -6.99 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 18 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 19 Si 0.88 22.43 27.74 -169.99 -4.72 17.72 16 20 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.28 -6.60 6.51 56.52 0.37 -6.24 16 23 C 0.10 1.21 6.89 -81.88 -0.56 0.65 16 24 C -0.09 -0.95 9.26 36.01 0.33 -0.62 16 25 N -0.44 -4.18 3.09 -115.28 -0.36 -4.54 16 26 C 0.07 0.34 10.39 59.84 0.62 0.96 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.28 6.94 -51.93 -0.36 -0.08 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.14 1.38 7.70 -52.49 -0.40 0.97 16 31 H 0.40 5.18 5.70 -40.82 -0.23 4.95 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.18 6.29 -51.93 -0.33 0.85 16 34 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.04 0.50 6.29 -51.93 -0.33 0.17 16 37 H 0.05 0.87 6.56 -51.93 -0.34 0.53 16 38 H 0.36 8.54 3.63 -40.82 -0.15 8.39 16 39 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.45 7.59 -51.93 -0.39 0.06 16 42 H 0.10 1.32 6.47 -51.93 -0.34 0.98 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.34 7.51 -51.93 -0.39 -0.05 16 45 H 0.08 0.29 6.90 -51.93 -0.36 -0.07 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -34.77 356.28 -7.19 -41.97 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.90 Total: 10.47 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.91 Total: -2.71 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.11 Total: -62.39 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.72 Total: 17.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.77 -7.19 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755266656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.982 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds