Wall clock time and date at job start Tue Mar 31 2020 07:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39833 * 126.45525 * 2 1 4 4 C 1.35454 * 107.86273 * 180.26087 * 3 2 1 5 5 N 1.35538 * 108.87204 * 359.74034 * 4 3 2 6 6 H 0.97003 * 125.67889 * 180.02562 * 5 4 3 7 7 C 1.37652 * 108.64280 * 0.02562 * 5 4 3 8 8 C 1.46683 * 126.23342 * 179.97438 * 7 5 4 9 9 O 1.21695 * 119.99865 * 180.02562 * 8 7 5 10 10 N 1.34773 * 119.99852 * 0.02562 * 8 7 5 11 11 C 1.46498 * 120.00043 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47272 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47269 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46953 * 305.00936 * 13 12 11 15 15 N 1.46505 * 109.46807 * 65.00478 * 13 12 11 16 16 C 1.36931 * 119.99788 * 205.00000 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31617 * 119.99873 * 180.27450 * 18 16 15 20 20 Si 1.86800 * 120.00209 * 0.27770 * 18 16 15 21 21 H 1.48498 * 109.47118 * 89.99559 * 20 18 16 22 22 H 1.48499 * 109.47134 * 210.00079 * 20 18 16 23 23 H 1.48507 * 109.46904 * 329.99901 * 20 18 16 24 24 C 1.52996 * 109.47332 * 185.00423 * 13 12 11 25 25 C 1.52998 * 109.47178 * 60.00127 * 24 13 12 26 26 C 1.52998 * 109.47309 * 180.02562 * 24 13 12 27 27 H 1.08996 * 109.47088 * 270.18247 * 1 2 3 28 28 H 1.08997 * 109.46848 * 30.18670 * 1 2 3 29 29 H 1.09007 * 109.46875 * 150.18247 * 1 2 3 30 30 H 1.07998 * 126.07288 * 0.02562 * 3 2 1 31 31 H 1.07995 * 125.56860 * 179.71944 * 4 3 2 32 32 H 0.97004 * 120.00109 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.46784 * 60.00269 * 11 10 8 34 34 H 1.08992 * 109.47427 * 300.00334 * 11 10 8 35 35 H 1.09000 * 109.46766 * 60.00541 * 12 11 10 36 36 H 1.08992 * 109.47398 * 300.00634 * 12 11 10 37 37 H 0.97000 * 119.99792 * 24.99795 * 15 13 12 38 38 H 0.97000 * 120.00553 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.46807 * 300.00318 * 24 13 12 40 40 H 1.09000 * 109.46863 * 59.99636 * 25 24 13 41 41 H 1.08994 * 109.47323 * 180.02562 * 25 24 13 42 42 H 1.08998 * 109.47238 * 300.00077 * 25 24 13 43 43 H 1.09003 * 109.47086 * 59.99982 * 26 24 13 44 44 H 1.08994 * 109.46999 * 179.97438 * 26 24 13 45 45 H 1.09000 * 109.46698 * 300.00343 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0037 6 1 4.4191 -1.2244 -0.0065 7 6 2.3263 -1.1089 0.0030 8 6 1.8898 -2.5093 0.0068 9 8 0.7026 -2.7766 0.0123 10 7 2.8036 -3.4999 0.0040 11 6 2.3678 -4.8985 0.0083 12 6 3.5932 -5.8147 0.0034 13 6 3.1380 -7.2754 0.0072 14 1 2.4711 -7.4459 0.8524 15 7 2.4294 -7.5693 -1.2409 16 6 1.5103 -8.5834 -1.2839 17 1 1.3073 -9.1663 -0.3977 18 6 0.8347 -8.8581 -2.4651 19 7 -0.0527 -9.8293 -2.5051 20 14 1.1852 -7.8495 -3.9979 21 1 2.2833 -8.4859 -4.7688 22 1 -0.0373 -7.7855 -4.8385 23 1 1.5881 -6.4753 -3.6047 24 6 4.3587 -8.1897 0.1281 25 6 5.0987 -7.8828 1.4316 26 6 3.9036 -9.6504 0.1313 27 1 -0.3633 0.0033 1.0276 28 1 -0.3633 0.8883 -0.5167 29 1 -0.3633 -0.8917 -0.5110 30 1 2.0137 2.1549 0.0004 31 1 4.4972 1.3252 -0.0117 32 1 3.7500 -3.2868 -0.0008 33 1 1.7650 -5.0939 -0.8786 34 1 1.7733 -5.0912 0.9013 35 1 4.1964 -5.6194 0.8901 36 1 4.1874 -5.6220 -0.8898 37 1 2.6114 -7.0455 -2.0368 38 1 -0.5245 -10.0216 -3.3304 39 1 5.0256 -8.0191 -0.7171 40 1 4.4319 -8.0533 2.2768 41 1 5.9687 -8.5338 1.5175 42 1 5.4231 -6.8422 1.4289 43 1 3.3766 -9.8689 -0.7975 44 1 4.7733 -10.3018 0.2170 45 1 3.2365 -9.8212 0.9763 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755549278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:27 Heat of formation + Delta-G solvation = 2.917193 kcal Electronic energy + Delta-G solvation = -23625.355523 eV Core-core repulsion = 20257.307334 eV Total energy + Delta-G solvation = -3368.048189 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48422 -39.07931 -37.59069 -34.92071 -33.08961 -32.67216 -31.44935 -30.36942 -29.42238 -27.10381 -26.38071 -25.36055 -22.89075 -22.11459 -21.26095 -20.76445 -19.51372 -19.22095 -18.71483 -17.43242 -15.86637 -15.68269 -15.64703 -15.15189 -14.38915 -14.08908 -14.04823 -13.88977 -13.68420 -13.47967 -13.35380 -12.96882 -12.71340 -12.56100 -12.36094 -12.31290 -11.89349 -11.67915 -11.67257 -11.40136 -11.05015 -10.86336 -10.77604 -10.46157 -10.26510 -10.12985 -10.00895 -9.78830 -9.42656 -9.04256 -8.97147 -8.85584 -8.30274 -7.24837 -5.74677 -3.09571 1.35589 2.55517 2.88095 3.17828 3.37698 3.39084 3.41768 3.48106 4.61220 4.77304 4.78344 5.02435 5.06184 5.11109 5.17573 5.36591 5.45616 5.57006 5.60388 5.62443 5.75479 5.77275 5.83063 5.86236 5.98395 6.02357 6.09861 6.20040 6.22465 6.30010 6.34861 6.43431 6.47134 6.56081 6.60486 6.63254 6.75359 6.79816 7.02743 7.15202 7.35584 7.51687 8.01519 8.22782 8.43940 9.22110 9.94732 10.13768 11.43438 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.003924 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.797821 B = 7134.512791 C = 8341.714502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.076 4.076 3 C -0.212 4.212 4 C 0.021 3.979 5 N -0.542 5.542 6 H 0.415 0.585 7 C -0.056 4.056 8 C 0.582 3.418 9 O -0.520 6.520 10 N -0.732 5.732 11 C 0.122 3.878 12 C -0.140 4.140 13 C 0.191 3.809 14 H 0.058 0.942 15 N -0.746 5.746 16 C -0.237 4.237 17 H 0.094 0.906 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.880 3.120 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.110 4.110 25 C -0.147 4.147 26 C -0.141 4.141 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.170 0.830 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.029 0.971 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.343 19.254 7.084 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.237 4.237 4 C -0.115 4.115 5 N -0.138 5.138 6 H 0.252 0.748 7 C -0.169 4.169 8 C 0.369 3.631 9 O -0.396 6.396 10 N -0.382 5.382 11 C 0.000 4.000 12 C -0.178 4.178 13 C 0.081 3.919 14 H 0.076 0.924 15 N -0.389 5.389 16 C -0.367 4.367 17 H 0.112 0.888 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.711 3.289 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.131 4.131 25 C -0.204 4.204 26 C -0.198 4.198 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.160 0.840 31 H 0.187 0.813 32 H 0.221 0.779 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.048 0.952 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.375 18.689 7.137 23.013 hybrid contribution 1.278 0.559 -1.223 1.855 sum 12.653 19.248 5.913 23.782 Atomic orbital electron populations 1.20360 0.89257 1.03008 1.02247 1.19986 0.95990 0.90770 1.01685 1.20806 0.91863 0.98787 1.12250 1.21972 0.99519 0.82965 1.07037 1.41947 1.07165 1.07258 1.57456 0.74803 1.20372 0.83633 0.93799 1.19096 1.17068 0.86087 0.82938 0.76997 1.90853 1.15917 1.83122 1.49707 1.46021 1.08788 1.07334 1.76092 1.21480 0.97429 0.77378 1.03753 1.22187 0.96887 0.96834 1.01911 1.20160 0.92041 0.89116 0.90623 0.92353 1.42821 1.48060 1.40258 1.07732 1.19048 1.12568 1.07291 0.97788 0.88846 1.24642 0.98614 0.98302 0.97415 1.69685 1.29085 1.32339 1.26944 0.86622 0.77337 0.80275 0.84695 1.21304 1.21845 1.20444 1.21739 0.97722 0.97578 0.96110 1.21930 0.99788 1.00245 0.98486 1.21837 0.99496 0.94239 1.04246 0.91521 0.92084 0.89969 0.84040 0.81306 0.77887 0.90058 0.91176 0.91100 0.91869 0.80744 0.93107 0.92367 0.93047 0.93654 0.93360 0.89249 0.95184 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.83 36.01 0.35 -0.76 16 2 C -0.08 -0.94 6.21 -104.16 -0.65 -1.59 16 3 C -0.21 -2.06 10.76 -39.98 -0.43 -2.49 16 4 C 0.02 0.16 11.89 -16.91 -0.20 -0.04 16 5 N -0.54 -4.58 5.99 -9.39 -0.06 -4.64 16 6 H 0.41 2.19 8.19 -40.82 -0.33 1.86 16 7 C -0.06 -0.71 7.06 -81.98 -0.58 -1.29 16 8 C 0.58 8.82 7.79 -12.85 -0.10 8.72 16 9 O -0.52 -9.98 14.80 5.19 0.08 -9.90 16 10 N -0.73 -9.36 5.55 -61.62 -0.34 -9.70 16 11 C 0.12 1.89 5.56 -4.04 -0.02 1.87 16 12 C -0.14 -1.92 4.65 -26.73 -0.12 -2.04 16 13 C 0.19 3.35 2.02 -67.93 -0.14 3.21 16 14 H 0.06 1.10 8.08 -51.93 -0.42 0.69 16 15 N -0.75 -16.48 4.26 -53.42 -0.23 -16.71 16 16 C -0.24 -6.34 8.05 -15.06 -0.12 -6.46 16 17 H 0.09 2.69 7.63 -52.49 -0.40 2.29 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -28.98 13.97 55.49 0.78 -28.20 16 20 Si 0.88 22.13 27.74 -169.99 -4.72 17.42 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 23 H -0.28 -6.66 6.51 56.52 0.37 -6.29 16 24 C -0.11 -1.77 2.69 -90.62 -0.24 -2.01 16 25 C -0.15 -1.87 8.85 37.16 0.33 -1.54 16 26 C -0.14 -2.57 8.26 37.16 0.31 -2.26 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.20 6.49 -51.92 -0.34 0.86 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.39 3.52 7.60 -40.82 -0.31 3.21 16 33 H 0.08 1.56 7.75 -51.93 -0.40 1.15 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.80 6.18 -51.93 -0.32 0.48 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 38 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.53 6.32 -51.93 -0.33 0.20 16 43 H 0.09 1.97 6.01 -51.93 -0.31 1.65 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 359.76 15.07 5.42 5.42 Total: -1.00 -33.69 359.76 -7.99 -41.69 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -7.21 Total: 11.23 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.71 Total: -6.62 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.15 Total: -59.24 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.72 Total: 17.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.69 -7.99 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755549278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.604 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds