Wall clock time and date at job start Tue Mar 31 2020 07:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48498 * 109.46876 * 269.99612 * 3 2 1 5 5 H 1.48495 * 109.46847 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47077 * 149.99796 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 164.52332 * 7 2 1 9 9 N 1.36936 * 120.00410 * 344.52041 * 7 2 1 10 10 C 1.47010 * 121.37191 * 335.97307 * 9 7 2 11 11 C 1.50324 * 109.16448 * 222.96712 * 10 9 7 12 12 C 1.29452 * 123.65304 * 349.27777 * 11 10 9 13 13 C 1.50700 * 117.69502 * 180.57901 * 12 11 10 14 14 N 1.46494 * 109.47356 * 95.00329 * 13 12 11 15 15 C 1.34773 * 120.00373 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99476 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00266 * 179.97438 * 15 14 13 18 18 N 1.46904 * 109.47268 * 180.02562 * 17 15 14 19 19 C 1.48537 * 110.99784 * 52.60350 * 18 17 15 20 20 C 1.54929 * 103.22474 * 159.72213 * 19 18 17 21 21 C 1.54601 * 102.92400 * 322.58525 * 20 19 18 22 22 C 1.47896 * 111.00006 * 170.00160 * 18 17 15 23 23 C 1.49964 * 124.61344 * 0.34462 * 12 11 10 24 24 C 1.47340 * 121.37945 * 155.99134 * 9 7 2 25 25 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.52477 * 103.05978 * 10 9 7 27 27 H 1.08999 * 109.52380 * 342.87140 * 10 9 7 28 28 H 1.08003 * 118.17417 * 169.00115 * 11 10 9 29 29 H 1.08999 * 109.47000 * 215.00157 * 13 12 11 30 30 H 1.09000 * 109.47141 * 335.00142 * 13 12 11 31 31 H 0.97004 * 119.99639 * 359.97438 * 14 13 12 32 32 H 1.08999 * 109.47249 * 300.00342 * 17 15 14 33 33 H 1.09000 * 109.46933 * 60.00352 * 17 15 14 34 34 H 1.08994 * 110.66477 * 278.15870 * 19 18 17 35 35 H 1.09007 * 110.66407 * 41.28950 * 19 18 17 36 36 H 1.09001 * 110.72784 * 204.23334 * 20 19 18 37 37 H 1.09000 * 110.72782 * 80.94189 * 20 19 18 38 38 H 1.08995 * 110.31134 * 263.04370 * 21 20 19 39 39 H 1.08998 * 110.39083 * 140.91361 * 21 20 19 40 40 H 1.08998 * 109.91753 * 333.50999 * 22 18 17 41 41 H 1.09000 * 109.91848 * 94.60575 * 22 18 17 42 42 H 1.09003 * 109.43742 * 221.05738 * 23 12 11 43 43 H 1.09001 * 109.13695 * 101.66498 * 23 12 11 44 44 H 1.09002 * 109.77806 * 237.79401 * 24 9 7 45 45 H 1.09002 * 109.77678 * 358.60079 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0608 -1.2192 -0.2490 9 7 1.3628 -2.3664 0.3176 10 6 0.1443 -2.3651 1.1400 11 6 0.2245 -3.4822 2.1427 12 6 1.1230 -4.4134 2.1089 13 6 1.0700 -5.4769 3.1752 14 7 0.3299 -6.6366 2.6720 15 6 0.1548 -7.7173 3.4580 16 8 0.6096 -7.7294 4.5822 17 6 -0.6072 -8.9101 2.9405 18 7 -0.6587 -9.9469 3.9800 19 6 -1.1739 -9.3935 5.2585 20 6 -1.6494 -10.6537 6.0241 21 6 -2.2471 -11.5345 4.9028 22 6 -1.5937 -11.0291 3.6032 23 6 2.2101 -4.5113 1.0804 24 6 1.8589 -3.6722 -0.1511 25 1 -0.4850 0.8401 -0.0004 26 1 -0.7266 -2.5110 0.5010 27 1 0.0584 -1.4123 1.6623 28 1 -0.5057 -3.5068 2.9381 29 1 2.0839 -5.7790 3.4378 30 1 0.5686 -5.0812 4.0584 31 1 -0.0342 -6.6267 1.7729 32 1 -1.6211 -8.6078 2.6786 33 1 -0.1063 -9.3056 2.0569 34 1 -0.3792 -8.8875 5.8066 35 1 -2.0085 -8.7164 5.0761 36 1 -2.4121 -10.3942 6.7584 37 1 -0.8078 -11.1556 6.5014 38 1 -3.3285 -11.4065 4.8571 39 1 -1.9974 -12.5823 5.0691 40 1 -2.3580 -10.6417 2.9296 41 1 -1.0483 -11.8391 3.1189 42 1 2.3356 -5.5525 0.7833 43 1 3.1430 -4.1471 1.5107 44 1 1.0846 -4.1744 -0.7311 45 1 2.7476 -3.5300 -0.7662 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755897566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:27 Heat of formation + Delta-G solvation = 12.171290 kcal Electronic energy + Delta-G solvation = -23354.220978 eV Core-core repulsion = 19986.574077 eV Total energy + Delta-G solvation = -3367.646901 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.16610 -38.50174 -37.61824 -34.94604 -33.01280 -32.45785 -30.91066 -29.77232 -29.03013 -27.75070 -26.01797 -23.97157 -22.76652 -21.60513 -21.12202 -21.01949 -20.44538 -17.76139 -17.29628 -16.47112 -16.18247 -15.72235 -15.43336 -15.28815 -15.02402 -14.28596 -14.05493 -13.89861 -13.60783 -13.45184 -13.28307 -12.94479 -12.58564 -12.41110 -12.27019 -12.08729 -11.75710 -11.60840 -11.53465 -11.37706 -11.16735 -10.93955 -10.83296 -10.74994 -10.41882 -10.34563 -9.86363 -9.73524 -9.59571 -8.98648 -8.71781 -8.62405 -8.09159 -6.78403 -5.83474 -3.22158 2.53502 2.63209 3.35314 3.36300 3.42872 3.45394 3.88183 4.42186 4.46540 4.48907 4.69375 4.79668 5.00129 5.06735 5.12354 5.14430 5.29915 5.32242 5.36978 5.43276 5.54719 5.54981 5.60773 5.77744 5.80286 5.91354 5.93860 6.02492 6.06616 6.14120 6.30170 6.44623 6.53756 6.65076 6.67642 6.70491 6.83071 7.12675 7.21829 7.28808 7.57463 7.69451 7.78648 8.26184 8.34357 9.15821 9.78578 10.36367 11.27112 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.002524 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.948078 B =11090.531073 C =11167.662011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.125 4.125 12 C -0.166 4.166 13 C 0.159 3.841 14 N -0.721 5.721 15 C 0.510 3.490 16 O -0.532 6.532 17 C 0.026 3.974 18 N -0.502 5.502 19 C 0.031 3.969 20 C -0.126 4.126 21 C -0.131 4.131 22 C 0.033 3.967 23 C -0.090 4.090 24 C 0.144 3.856 25 H 0.254 0.746 26 H 0.041 0.959 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.401 0.599 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.023 0.977 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -19.990 6.489 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.069 3.931 11 C -0.145 4.145 12 C -0.166 4.166 13 C 0.036 3.964 14 N -0.373 5.373 15 C 0.295 3.705 16 O -0.409 6.409 17 C -0.105 4.105 18 N -0.227 5.227 19 C -0.096 4.096 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.094 4.094 23 C -0.129 4.129 24 C 0.017 3.983 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.000 -20.015 7.349 21.693 hybrid contribution -0.697 1.240 -0.628 1.554 sum -4.697 -18.775 6.721 20.487 Atomic orbital electron populations 1.70004 1.05195 1.25550 1.54799 1.24991 0.95405 0.98332 1.01209 0.86254 0.79088 0.83516 0.77691 1.21414 1.21551 1.20514 1.19172 0.92236 0.84350 1.41773 0.91361 1.44127 1.29218 1.01210 1.57294 1.19758 0.88796 0.94786 0.89762 1.23283 0.95817 0.96730 0.98719 1.20496 0.99917 0.97303 0.98929 1.20438 0.96179 0.84273 0.95475 1.46180 1.56839 1.16166 1.18088 1.20446 0.80634 0.83620 0.85767 1.90629 1.49622 1.81456 1.19163 1.22242 0.99925 0.91629 0.96747 1.64683 1.46900 1.08497 1.02578 1.23535 0.99358 0.95931 0.90814 1.22531 1.00500 0.96118 0.97297 1.22395 0.99699 1.00246 0.94611 1.22939 0.94101 0.95162 0.97247 1.20756 0.96683 0.99026 0.96462 1.20954 0.97357 0.87164 0.92792 0.93591 0.94142 0.88870 0.88845 0.91572 0.91772 0.76481 0.91803 0.87694 0.86914 0.94508 0.91206 0.90723 0.91607 0.91013 0.93732 0.90171 0.92822 0.91758 0.95949 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.89 11.08 55.49 0.61 -25.28 16 2 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 3 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.65 9.71 -15.06 -0.15 -6.80 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -14.60 3.01 -173.67 -0.52 -15.12 16 10 C 0.19 4.49 5.23 -5.10 -0.03 4.46 16 11 C -0.12 -2.31 9.47 -35.78 -0.34 -2.65 16 12 C -0.17 -2.77 5.23 -100.99 -0.53 -3.29 16 13 C 0.16 2.33 5.66 -5.20 -0.03 2.30 16 14 N -0.72 -8.99 5.55 -61.48 -0.34 -9.33 16 15 C 0.51 6.66 7.54 -10.99 -0.08 6.57 16 16 O -0.53 -8.74 13.52 5.56 0.08 -8.67 16 17 C 0.03 0.26 5.52 -4.97 -0.03 0.23 16 18 N -0.50 -5.48 5.26 -231.90 -1.22 -6.70 16 19 C 0.03 0.34 5.30 -1.90 -0.01 0.33 16 20 C -0.13 -1.10 7.06 -24.87 -0.18 -1.28 16 21 C -0.13 -0.98 6.93 -25.37 -0.18 -1.15 16 22 C 0.03 0.28 6.69 -2.76 -0.02 0.26 16 23 C -0.09 -1.53 5.94 -28.18 -0.17 -1.70 16 24 C 0.14 2.89 6.58 -3.53 -0.02 2.87 16 25 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 2.42 6.41 -51.93 -0.33 2.09 16 28 H 0.09 1.56 7.73 -52.48 -0.41 1.16 16 29 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 30 H 0.06 0.98 7.78 -51.93 -0.40 0.58 16 31 H 0.40 4.29 8.46 -40.82 -0.35 3.95 16 32 H 0.06 0.55 7.81 -51.93 -0.41 0.14 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.11 1.55 5.97 -51.93 -0.31 1.24 16 35 H 0.04 0.41 8.02 -51.92 -0.42 -0.01 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.04 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -30.65 354.61 -10.54 -41.19 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.62 Total: 2.05 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.84 Total: 0.03 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -1.47 Total: -56.44 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.65 -10.54 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755897566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.362 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds