Wall clock time and date at job start Tue Mar 31 2020 07:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48498 * 109.46876 * 269.99612 * 3 2 1 5 5 H 1.48495 * 109.46847 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47077 * 149.99796 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99969 * 164.52332 * 7 2 1 9 9 N 1.36936 * 120.00410 * 344.52041 * 7 2 1 10 10 C 1.47010 * 121.37191 * 335.97307 * 9 7 2 11 11 C 1.50324 * 109.16448 * 222.96712 * 10 9 7 12 12 C 1.29452 * 123.65304 * 349.27777 * 11 10 9 13 13 C 1.50700 * 117.69502 * 180.57901 * 12 11 10 14 14 N 1.46494 * 109.47356 * 95.00329 * 13 12 11 15 15 C 1.34773 * 120.00373 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99476 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00266 * 179.97438 * 15 14 13 18 18 N 1.46904 * 109.47268 * 180.02562 * 17 15 14 19 19 C 1.48537 * 110.99784 * 52.60350 * 18 17 15 20 20 C 1.54929 * 103.22474 * 159.72213 * 19 18 17 21 21 C 1.54601 * 102.92400 * 322.58525 * 20 19 18 22 22 C 1.47896 * 111.00006 * 170.00160 * 18 17 15 23 23 C 1.49964 * 124.61344 * 0.34462 * 12 11 10 24 24 C 1.47340 * 121.37945 * 155.99134 * 9 7 2 25 25 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.52477 * 103.05978 * 10 9 7 27 27 H 1.08999 * 109.52380 * 342.87140 * 10 9 7 28 28 H 1.08003 * 118.17417 * 169.00115 * 11 10 9 29 29 H 1.08999 * 109.47000 * 215.00157 * 13 12 11 30 30 H 1.09000 * 109.47141 * 335.00142 * 13 12 11 31 31 H 0.97004 * 119.99639 * 359.97438 * 14 13 12 32 32 H 1.08999 * 109.47249 * 300.00342 * 17 15 14 33 33 H 1.09000 * 109.46933 * 60.00352 * 17 15 14 34 34 H 1.08994 * 110.66477 * 278.15870 * 19 18 17 35 35 H 1.09007 * 110.66407 * 41.28950 * 19 18 17 36 36 H 1.09001 * 110.72784 * 204.23334 * 20 19 18 37 37 H 1.09000 * 110.72782 * 80.94189 * 20 19 18 38 38 H 1.08995 * 110.31134 * 263.04370 * 21 20 19 39 39 H 1.08998 * 110.39083 * 140.91361 * 21 20 19 40 40 H 1.08998 * 109.91753 * 333.50999 * 22 18 17 41 41 H 1.09000 * 109.91848 * 94.60575 * 22 18 17 42 42 H 1.09003 * 109.43742 * 221.05738 * 23 12 11 43 43 H 1.09001 * 109.13695 * 101.66498 * 23 12 11 44 44 H 1.09002 * 109.77806 * 237.79401 * 24 9 7 45 45 H 1.09002 * 109.77678 * 358.60079 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0608 -1.2192 -0.2490 9 7 1.3628 -2.3664 0.3176 10 6 0.1443 -2.3651 1.1400 11 6 0.2245 -3.4822 2.1427 12 6 1.1230 -4.4134 2.1089 13 6 1.0700 -5.4769 3.1752 14 7 0.3299 -6.6366 2.6720 15 6 0.1548 -7.7173 3.4580 16 8 0.6096 -7.7294 4.5822 17 6 -0.6072 -8.9101 2.9405 18 7 -0.6587 -9.9469 3.9800 19 6 -1.1739 -9.3935 5.2585 20 6 -1.6494 -10.6537 6.0241 21 6 -2.2471 -11.5345 4.9028 22 6 -1.5937 -11.0291 3.6032 23 6 2.2101 -4.5113 1.0804 24 6 1.8589 -3.6722 -0.1511 25 1 -0.4850 0.8401 -0.0004 26 1 -0.7266 -2.5110 0.5010 27 1 0.0584 -1.4123 1.6623 28 1 -0.5057 -3.5068 2.9381 29 1 2.0839 -5.7790 3.4378 30 1 0.5686 -5.0812 4.0584 31 1 -0.0342 -6.6267 1.7729 32 1 -1.6211 -8.6078 2.6786 33 1 -0.1063 -9.3056 2.0569 34 1 -0.3792 -8.8875 5.8066 35 1 -2.0085 -8.7164 5.0761 36 1 -2.4121 -10.3942 6.7584 37 1 -0.8078 -11.1556 6.5014 38 1 -3.3285 -11.4065 4.8571 39 1 -1.9974 -12.5823 5.0691 40 1 -2.3580 -10.6417 2.9296 41 1 -1.0483 -11.8391 3.1189 42 1 2.3356 -5.5525 0.7833 43 1 3.1430 -4.1471 1.5107 44 1 1.0846 -4.1744 -0.7311 45 1 2.7476 -3.5300 -0.7662 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755897566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:26 Heat of formation + Delta-G solvation = -8.596762 kcal Electronic energy + Delta-G solvation = -23355.121549 eV Core-core repulsion = 19986.574077 eV Total energy + Delta-G solvation = -3368.547472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14361 -39.63294 -38.88170 -36.38234 -34.55493 -33.34646 -32.53570 -31.43659 -29.72360 -29.04765 -27.32759 -25.51485 -24.36060 -22.90054 -22.28475 -21.68781 -21.44983 -19.50732 -18.40989 -17.45188 -17.32446 -17.08702 -16.74406 -16.42120 -16.21782 -15.69380 -15.41864 -15.20063 -15.06112 -14.63506 -14.46896 -14.05198 -13.94680 -13.64091 -13.31031 -13.27867 -13.11892 -12.88904 -12.79363 -12.58943 -12.47227 -12.26203 -12.20315 -12.11613 -11.87583 -11.71709 -11.45042 -11.27423 -10.74765 -10.67276 -10.08391 -9.65256 -9.38607 -8.75657 -7.89515 -5.30397 1.17019 1.46127 1.48064 1.57236 1.63268 2.31986 2.50543 3.10100 3.27972 3.61840 3.70764 3.77735 3.87003 3.95870 4.01742 4.10549 4.30459 4.35258 4.41875 4.45799 4.52950 4.64957 4.66400 4.74550 4.76300 4.83766 4.91437 4.95397 5.00271 5.09900 5.12911 5.20436 5.22105 5.31229 5.37996 5.47546 5.48687 5.60860 5.76146 5.88063 5.97547 6.15951 6.33204 6.59144 7.12810 7.27105 7.82932 8.36382 9.19145 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.002524 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.948078 B =11090.531073 C =11167.662011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.257 4.257 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.205 3.795 11 C -0.143 4.143 12 C -0.137 4.137 13 C 0.170 3.830 14 N -0.713 5.713 15 C 0.508 3.492 16 O -0.569 6.569 17 C 0.031 3.969 18 N -0.522 5.522 19 C 0.031 3.969 20 C -0.125 4.125 21 C -0.128 4.128 22 C 0.032 3.968 23 C -0.084 4.084 24 C 0.139 3.861 25 H 0.250 0.750 26 H 0.015 0.985 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.413 0.587 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.029 0.971 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -22.159 6.326 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.387 4.387 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.080 3.920 11 C -0.163 4.163 12 C -0.138 4.138 13 C 0.047 3.953 14 N -0.365 5.365 15 C 0.295 3.705 16 O -0.448 6.448 17 C -0.100 4.100 18 N -0.247 5.247 19 C -0.096 4.096 20 C -0.163 4.163 21 C -0.166 4.166 22 C -0.095 4.095 23 C -0.123 4.123 24 C 0.013 3.987 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.796 -22.222 7.160 23.653 hybrid contribution -0.712 1.833 -0.602 2.057 sum -4.508 -20.388 6.558 21.886 Atomic orbital electron populations 1.70161 1.06481 1.25791 1.56186 1.25735 0.96181 1.01330 1.01703 0.85275 0.77969 0.79644 0.77577 1.21050 1.21967 1.19751 1.19502 0.92553 0.85651 1.40960 0.91231 1.44414 1.29422 1.02179 1.57976 1.19399 0.87722 0.94920 0.89963 1.22936 0.98168 0.96238 0.98968 1.20602 0.98174 0.96629 0.98416 1.20171 0.96510 0.84301 0.94365 1.46015 1.56475 1.15399 1.18630 1.21025 0.80110 0.84190 0.85138 1.90638 1.51162 1.82163 1.20815 1.22284 1.00597 0.90195 0.96939 1.64658 1.48183 1.09227 1.02658 1.23385 0.98095 0.96757 0.91398 1.22517 1.00667 0.95274 0.97816 1.22409 1.00244 1.00461 0.93455 1.23021 0.94110 0.94521 0.97888 1.20694 0.96292 1.00382 0.94905 1.21148 0.97422 0.85730 0.94366 0.94116 0.96764 0.92568 0.87089 0.91580 0.92312 0.75109 0.89869 0.85508 0.90043 0.94887 0.90188 0.91313 0.90436 0.89921 0.92508 0.89397 0.89215 0.92023 0.95274 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.10 11.08 21.65 0.24 -54.86 16 2 C -0.05 -3.05 5.01 84.86 0.43 -2.62 16 3 Si 0.97 44.86 29.58 68.60 2.03 46.89 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.26 -14.03 9.71 84.03 0.82 -13.21 16 8 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 9 N -0.62 -30.47 3.01 -703.37 -2.12 -32.59 16 10 C 0.21 9.77 5.23 85.42 0.45 10.21 16 11 C -0.14 -5.23 9.47 27.11 0.26 -4.97 16 12 C -0.14 -4.34 5.23 -15.14 -0.08 -4.42 16 13 C 0.17 4.64 5.66 85.63 0.48 5.12 16 14 N -0.71 -16.00 5.55 -466.81 -2.59 -18.59 16 15 C 0.51 12.31 7.54 87.66 0.66 12.97 16 16 O -0.57 -18.32 13.52 -3.03 -0.04 -18.36 16 17 C 0.03 0.53 5.52 85.56 0.47 1.00 16 18 N -0.52 -10.38 5.26 -887.58 -4.67 -15.05 16 19 C 0.03 0.67 5.30 86.65 0.46 1.13 16 20 C -0.12 -2.00 7.06 31.80 0.22 -1.78 16 21 C -0.13 -1.57 6.93 31.48 0.22 -1.35 16 22 C 0.03 0.44 6.69 86.45 0.58 1.02 16 23 C -0.08 -2.65 5.94 29.65 0.18 -2.47 16 24 C 0.14 5.41 6.58 86.25 0.57 5.97 16 25 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 3.06 6.41 -2.39 -0.02 3.04 16 28 H 0.11 3.65 7.73 -2.91 -0.02 3.62 16 29 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 30 H 0.06 1.71 7.78 -2.39 -0.02 1.69 16 31 H 0.41 7.51 8.46 -92.71 -0.78 6.73 16 32 H 0.08 1.14 7.81 -2.39 -0.02 1.12 16 33 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 2.28 5.97 -2.39 -0.01 2.27 16 35 H 0.03 0.71 8.02 -2.38 -0.02 0.69 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.65 7.57 -2.39 -0.02 0.63 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 2.26 7.96 -2.39 -0.02 2.24 16 Total: -1.00 -67.78 354.61 -1.26 -69.03 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.18 Total: 16.90 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.71 Total: 6.62 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -9.14 Total: -121.08 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.04 Total: -18.36 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.78 -1.26 -69.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755897566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.437 kcal (2) G-P(sol) polarization free energy of solvation -67.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds