Wall clock time and date at job start Tue Mar 31 2020 08:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00357 * 2 1 4 4 C 1.50706 * 109.46979 * 180.02562 * 3 2 1 5 5 C 1.38115 * 120.40196 * 0.27761 * 4 3 2 6 6 C 1.39628 * 118.33124 * 180.23917 * 5 4 3 7 7 N 1.38542 * 120.52900 * 179.76358 * 6 5 4 8 8 C 1.46504 * 120.00057 * 359.71827 * 7 6 5 9 9 H 1.09003 * 109.47184 * 35.00701 * 8 7 6 10 10 C 1.53001 * 109.47398 * 275.00172 * 8 7 6 11 11 C 1.50706 * 109.47113 * 155.00174 * 8 7 6 12 12 H 1.08003 * 119.99741 * 5.45987 * 11 8 7 13 13 C 1.37872 * 119.99985 * 185.45943 * 11 8 7 14 14 N 1.31516 * 120.00314 * 9.56656 * 13 11 8 15 15 Si 1.86803 * 119.99827 * 189.55551 * 13 11 8 16 16 H 1.48499 * 109.46606 * 84.99838 * 15 13 11 17 17 H 1.48500 * 109.47078 * 204.99708 * 15 13 11 18 18 H 1.48493 * 109.47427 * 324.99855 * 15 13 11 19 19 N 1.32987 * 118.93557 * 359.48746 * 6 5 4 20 20 C 1.31748 * 120.69144 * 0.25250 * 19 6 5 21 21 C 1.50693 * 119.08677 * 179.97438 * 20 19 6 22 22 C 1.53005 * 109.46954 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47188 * 119.99765 * 21 20 19 24 24 C 1.52997 * 109.47168 * 240.00270 * 21 20 19 25 25 N 1.31795 * 121.82909 * 0.02562 * 20 19 6 26 26 H 1.08996 * 109.47663 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47093 * 300.00252 * 1 2 3 28 28 H 1.09000 * 109.46744 * 59.99886 * 1 2 3 29 29 H 1.08999 * 109.46966 * 60.00224 * 3 2 1 30 30 H 1.09001 * 109.47009 * 299.99851 * 3 2 1 31 31 H 1.08004 * 120.83641 * 359.97438 * 5 4 3 32 32 H 0.97003 * 120.00073 * 179.72203 * 7 6 5 33 33 H 1.09001 * 109.46747 * 63.65868 * 10 8 7 34 34 H 1.09000 * 109.47017 * 183.66204 * 10 8 7 35 35 H 1.08998 * 109.47048 * 303.66245 * 10 8 7 36 36 H 0.96996 * 120.00276 * 179.97438 * 14 13 11 37 37 H 1.08990 * 109.47611 * 60.00150 * 22 21 20 38 38 H 1.09002 * 109.46941 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47001 * 299.99734 * 22 21 20 40 40 H 1.09000 * 109.47158 * 59.99998 * 23 21 20 41 41 H 1.09002 * 109.47251 * 180.02562 * 23 21 20 42 42 H 1.09000 * 109.47089 * 299.99775 * 23 21 20 43 43 H 1.08997 * 109.47490 * 59.99835 * 24 21 20 44 44 H 1.09002 * 109.47118 * 180.02562 * 24 21 20 45 45 H 1.09005 * 109.47101 * 299.99530 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1152 -0.0565 -0.0069 6 6 5.5102 -0.1165 -0.0021 7 7 6.1620 -1.3390 -0.0031 8 6 5.3871 -2.5823 -0.0030 9 1 4.4800 -2.4452 -0.5918 10 6 5.0117 -2.9492 1.4342 11 6 6.2137 -3.6896 -0.6045 12 1 7.2449 -3.5100 -0.8709 13 6 5.6537 -4.9318 -0.8147 14 7 4.3577 -5.1020 -0.6695 15 14 6.7357 -6.3730 -1.3062 16 1 7.3127 -6.9966 -0.0882 17 1 5.9214 -7.3765 -2.0377 18 1 7.8331 -5.8918 -2.1832 19 7 6.2031 1.0186 -0.0022 20 6 5.5864 2.1829 -0.0017 21 6 6.4072 3.4466 -0.0012 22 6 7.8948 3.0885 -0.0020 23 6 6.0802 4.2677 -1.2501 24 6 6.0803 4.2666 1.2484 25 7 4.2715 2.2730 -0.0006 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.5223 -0.9592 -0.0110 32 1 7.1315 -1.3718 -0.0038 33 1 4.3601 -2.1792 1.8473 34 1 4.4916 -3.9072 1.4405 35 1 5.9158 -3.0227 2.0384 36 1 3.9637 -5.9758 -0.8178 37 1 8.1275 2.5046 -0.8924 38 1 8.4885 4.0026 -0.0021 39 1 8.1281 2.5034 0.8875 40 1 5.0205 4.5228 -1.2500 41 1 6.6743 5.1816 -1.2500 42 1 6.3133 3.6834 -2.1403 43 1 6.3133 3.6817 2.1381 44 1 6.6737 5.1810 1.2485 45 1 5.0205 4.5218 1.2485 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178518708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:44 Heat of formation + Delta-G solvation = -12.167480 kcal Electronic energy + Delta-G solvation = -24171.334453 eV Core-core repulsion = 20802.632144 eV Total energy + Delta-G solvation = -3368.702310 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60416 -37.83428 -36.99834 -35.67325 -33.49238 -32.22777 -30.39282 -28.62843 -27.64097 -27.14890 -26.93108 -25.71828 -25.25786 -23.71979 -21.86064 -20.56737 -19.02390 -17.85547 -16.67579 -16.13567 -15.88887 -15.68940 -15.02320 -14.78859 -14.65270 -14.46518 -14.28285 -13.74177 -13.58182 -13.39488 -12.71994 -12.53815 -12.34210 -12.25969 -12.00118 -11.95303 -11.50500 -11.41608 -11.35515 -11.15184 -11.05210 -10.85040 -10.79093 -10.71890 -10.59464 -10.32896 -10.21630 -9.85958 -9.66170 -9.19877 -8.97914 -8.58657 -8.53242 -7.18358 -6.23132 -4.28042 1.64666 2.01955 3.22150 3.28814 3.30870 3.56806 3.87750 4.30925 4.38614 4.53486 4.77392 5.07844 5.11357 5.16926 5.24415 5.29885 5.34219 5.40415 5.53675 5.55747 5.72728 5.72792 5.80641 5.85476 5.94741 5.98116 6.04120 6.07141 6.20578 6.27741 6.40925 6.43745 6.58763 6.62460 6.74814 6.87870 6.93901 7.21808 7.29264 7.51786 7.57719 7.69477 7.94399 8.20800 8.55165 8.74640 8.97170 9.37819 10.85333 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.004804 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.497444 B = 5827.094879 C = 7501.742818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.119 3.881 4 C 0.182 3.818 5 C -0.268 4.268 6 C 0.442 3.558 7 N -0.682 5.682 8 C 0.266 3.734 9 H 0.053 0.947 10 C -0.146 4.146 11 C -0.536 4.536 12 H 0.063 0.937 13 C 0.071 3.929 14 N -0.881 5.881 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.274 1.274 19 N -0.587 5.587 20 C 0.365 3.635 21 C 0.005 3.995 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.132 4.132 25 N -0.573 5.573 26 H 0.090 0.910 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.397 0.603 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.032 0.968 36 H 0.266 0.734 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 14.945 2.007 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C 0.042 3.958 4 C 0.042 3.958 5 C -0.297 4.297 6 C 0.195 3.805 7 N -0.307 5.307 8 C 0.164 3.836 9 H 0.071 0.929 10 C -0.205 4.205 11 C -0.574 4.574 12 H 0.081 0.919 13 C -0.133 4.133 14 N -0.518 5.518 15 Si 0.727 3.273 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.198 1.198 19 N -0.314 5.314 20 C 0.094 3.906 21 C 0.003 3.997 22 C -0.183 4.183 23 C -0.190 4.190 24 C -0.190 4.190 25 N -0.296 5.296 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.171 0.829 32 H 0.232 0.768 33 H 0.038 0.962 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.562 15.128 1.988 15.472 hybrid contribution 0.133 -1.626 -0.242 1.649 sum -2.429 13.502 1.745 13.830 Atomic orbital electron populations 1.22745 0.80628 1.03144 0.99696 1.87955 1.19749 1.26618 1.95426 1.20853 0.88435 0.85105 1.01390 1.20653 0.94706 0.88695 0.91717 1.22013 0.94366 1.00628 1.12656 1.18805 0.88897 0.86714 0.86056 1.45493 1.09483 1.02384 1.73363 1.18926 0.92513 0.78651 0.93539 0.92888 1.22112 0.99122 1.01306 0.97950 1.21098 0.98046 0.95186 1.43075 0.91901 1.24856 0.94965 0.98788 0.94729 1.69956 1.09712 1.23933 1.48185 0.86481 0.80343 0.81803 0.78650 1.20348 1.21092 1.19845 1.67752 1.41048 0.97529 1.25030 1.22320 0.86872 0.91885 0.89480 1.19249 0.94102 0.89419 0.96925 1.21666 0.92864 1.00393 1.03334 1.21798 1.02303 0.98884 0.96049 1.21794 1.02311 0.98877 0.96011 1.67577 1.06469 1.32269 1.23251 0.89197 0.94136 0.94097 0.91191 0.91162 0.82936 0.76815 0.96207 0.90506 0.94848 0.92439 0.92035 0.93068 0.92077 0.91592 0.92214 0.92897 0.92941 0.92214 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.00 9.25 -35.23 -0.33 -6.32 16 3 C 0.12 1.75 6.50 36.01 0.23 1.98 16 4 C 0.18 3.31 6.82 -82.33 -0.56 2.75 16 5 C -0.27 -5.52 8.27 -39.11 -0.32 -5.84 16 6 C 0.44 9.33 7.69 -154.78 -1.19 8.14 16 7 N -0.68 -14.90 5.22 -54.90 -0.29 -15.19 16 8 C 0.27 6.48 2.13 -69.08 -0.15 6.33 16 9 H 0.05 1.43 6.44 -51.93 -0.33 1.10 16 10 C -0.15 -3.41 9.34 37.16 0.35 -3.06 16 11 C -0.54 -14.03 8.66 -34.44 -0.30 -14.33 16 12 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 13 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 14 N -0.88 -24.09 12.16 55.43 0.67 -23.42 16 15 Si 0.90 20.47 29.55 -169.99 -5.02 15.44 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 N -0.59 -11.50 9.04 -9.97 -0.09 -11.59 16 20 C 0.37 6.44 6.25 -157.24 -0.98 5.45 16 21 C 0.01 0.07 0.92 -155.66 -0.14 -0.07 16 22 C -0.12 -1.62 7.67 37.16 0.28 -1.34 16 23 C -0.13 -1.60 8.37 37.16 0.31 -1.29 16 24 C -0.13 -1.57 8.37 37.16 0.31 -1.26 16 25 N -0.57 -10.11 9.74 -7.07 -0.07 -10.18 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.15 3.37 5.31 -52.48 -0.28 3.10 16 32 H 0.40 8.31 8.65 -40.82 -0.35 7.95 16 33 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 34 H 0.08 1.92 6.83 -51.93 -0.35 1.57 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.85 8.04 -51.93 -0.42 0.44 16 40 H 0.07 0.81 8.01 -51.93 -0.42 0.40 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.81 8.01 -51.93 -0.42 0.39 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -28.52 366.12 -8.32 -36.84 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.58 Total: 8.15 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -1.14 Total: 0.74 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.23 Total: -60.38 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.33 Total: -6.32 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.52 -8.32 -36.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178518708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.677 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds