Wall clock time and date at job start Tue Mar 31 2020 08:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08991 * 109.91481 * 2 1 4 4 C 1.55343 * 109.91554 * 238.88993 * 2 1 3 5 5 C 1.53670 * 101.77744 * 218.19492 * 4 2 1 6 6 H 1.09006 * 111.10591 * 281.48450 * 5 4 2 7 7 C 1.51932 * 115.22855 * 153.34756 * 5 4 2 8 8 C 1.53701 * 107.28022 * 185.14114 * 7 5 4 9 9 C 1.52582 * 111.49530 * 58.12382 * 8 7 5 10 10 C 1.53777 * 111.37701 * 305.15584 * 9 8 7 11 11 C 1.51419 * 107.35263 * 57.27363 * 10 9 8 12 12 H 1.09000 * 108.70723 * 53.70111 * 11 10 9 13 13 N 1.45387 * 117.73745 * 178.49315 * 11 10 9 14 14 C 1.34778 * 126.43625 * 329.53386 * 13 11 10 15 15 O 1.21275 * 120.00148 * 4.82693 * 14 13 11 16 16 C 1.50701 * 119.99851 * 184.82472 * 14 13 11 17 17 C 1.52998 * 109.47402 * 186.85824 * 16 14 13 18 18 C 1.52994 * 109.47539 * 179.97438 * 17 16 14 19 19 C 1.52998 * 109.47539 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47402 * 180.02562 * 19 18 17 21 21 H 1.07994 * 119.99914 * 359.97438 * 20 19 18 22 22 C 1.37873 * 119.99871 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99974 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00155 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46675 * 90.00532 * 24 22 20 26 26 H 1.48495 * 109.47206 * 210.00363 * 24 22 20 27 27 H 1.48494 * 109.47306 * 330.00734 * 24 22 20 28 28 H 1.08997 * 109.47155 * 176.16220 * 1 2 3 29 29 H 1.09006 * 109.46543 * 296.15723 * 1 2 3 30 30 H 1.08995 * 109.46988 * 56.15073 * 1 2 3 31 31 H 1.08997 * 110.96535 * 100.07261 * 4 2 1 32 32 H 1.08996 * 110.96614 * 336.30953 * 4 2 1 33 33 H 1.09000 * 109.89184 * 304.58067 * 7 5 4 34 34 H 1.08999 * 109.89408 * 65.69747 * 7 5 4 35 35 H 1.08996 * 109.07930 * 297.60866 * 8 7 5 36 36 H 1.09000 * 109.02182 * 178.60215 * 8 7 5 37 37 H 1.08999 * 109.09748 * 184.66506 * 9 8 7 38 38 H 1.09002 * 109.09707 * 65.64510 * 9 8 7 39 39 H 1.08995 * 109.87760 * 297.81197 * 10 9 8 40 40 H 1.09001 * 109.88198 * 176.73348 * 10 9 8 41 41 H 1.09009 * 109.46920 * 306.85608 * 16 14 13 42 42 H 1.09003 * 109.47287 * 66.85361 * 16 14 13 43 43 H 1.09001 * 109.46668 * 299.99996 * 17 16 14 44 44 H 1.09006 * 109.46821 * 59.99726 * 17 16 14 45 45 H 1.09009 * 109.46873 * 299.99839 * 18 17 16 46 46 H 1.09003 * 109.47197 * 59.99509 * 18 17 16 47 47 H 1.09001 * 109.46668 * 300.00023 * 19 18 17 48 48 H 1.09006 * 109.46821 * 59.99752 * 19 18 17 49 49 H 0.96998 * 120.00350 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9013 1.0247 0.0000 4 6 2.0592 -0.7546 -1.2505 5 6 3.2776 -1.4953 -0.6775 6 1 4.1312 -0.8254 -0.5739 7 6 3.6570 -2.7755 -1.4025 8 6 4.8011 -3.4273 -0.6096 9 6 4.3906 -3.7128 0.8320 10 6 3.8755 -2.4431 1.5300 11 6 2.7180 -1.9144 0.7092 12 1 1.9910 -2.7152 0.5737 13 7 2.0351 -0.7245 1.1902 14 6 1.8880 -0.3510 2.4769 15 8 2.4243 -0.9883 3.3584 16 6 1.0572 0.8585 2.8201 17 6 1.1912 1.1623 4.3136 18 6 0.3482 2.3906 4.6619 19 6 0.4817 2.6939 6.1556 20 6 -0.3492 3.9035 6.4988 21 1 -0.9155 4.4058 5.7286 22 6 -0.3856 4.3693 7.7959 23 7 -1.1103 5.4251 8.0954 24 14 0.5945 3.5008 9.1281 25 1 1.9509 4.0993 9.2143 26 1 -0.0984 3.6549 10.4324 27 1 0.7102 2.0580 8.7965 28 1 -0.3633 -1.0253 -0.0688 29 1 -0.3632 0.4531 0.9225 30 1 -0.3633 0.5724 -0.8534 31 1 2.3594 -0.0548 -2.0303 32 1 1.3158 -1.4583 -1.6249 33 1 2.8006 -3.4488 -1.4390 34 1 3.9914 -2.5439 -2.4137 35 1 5.6610 -2.7574 -0.6090 36 1 5.0796 -4.3638 -1.0927 37 1 5.2521 -4.0959 1.3789 38 1 3.6031 -4.4664 0.8359 39 1 4.6689 -1.6972 1.5753 40 1 3.5355 -2.6855 2.5368 41 1 1.4059 1.7146 2.2424 42 1 0.0120 0.6609 2.5818 43 1 0.8425 0.3061 4.8911 44 1 2.2364 1.3599 4.5518 45 1 0.6973 3.2465 4.0843 46 1 -0.6971 2.1934 4.4236 47 1 0.1322 1.8379 6.7328 48 1 1.5269 2.8910 6.3943 49 1 -1.1362 5.7527 9.0080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588369607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:05 Heat of formation + Delta-G solvation = -73.189679 kcal Electronic energy + Delta-G solvation = -24172.181419 eV Core-core repulsion = 20904.373332 eV Total energy + Delta-G solvation = -3267.808087 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05006 -38.56045 -36.24141 -35.01888 -32.59461 -32.53511 -31.17863 -30.31044 -29.38574 -26.40049 -25.97510 -23.43213 -22.11516 -21.57717 -21.36811 -20.41545 -19.99177 -18.72950 -16.81723 -16.58679 -16.37200 -15.71361 -15.02912 -14.92840 -14.64842 -14.35024 -14.15005 -13.92988 -13.78777 -13.31235 -13.10711 -12.79071 -12.71583 -12.41158 -12.36289 -12.15954 -12.04222 -11.83529 -11.61254 -11.49733 -11.29767 -11.17154 -11.04503 -10.88938 -10.74351 -10.63977 -10.46780 -10.33866 -9.84163 -9.68090 -9.60211 -9.29318 -9.09355 -8.72135 -8.47500 -5.98756 -3.96052 2.71218 2.85496 3.36848 3.43750 3.50264 3.97929 4.17998 4.32772 4.51918 4.58885 4.65495 4.74296 4.78608 4.88504 5.04585 5.05246 5.09075 5.17901 5.21573 5.26404 5.28421 5.33031 5.35715 5.38354 5.47185 5.52633 5.63769 5.67664 5.74166 5.77011 5.81528 5.85746 5.93694 6.02014 6.08231 6.10745 6.13666 6.19448 6.39298 6.46962 6.71522 6.85232 7.02016 7.40587 7.50537 7.53622 7.86863 8.26134 8.60406 9.06315 9.64767 11.14782 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.028047 B = 0.002843 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.073994 B = 9847.522636 C =10655.650241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 H 0.081 0.919 4 C -0.121 4.121 5 C -0.107 4.107 6 H 0.085 0.915 7 C -0.105 4.105 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.119 4.119 11 C 0.136 3.864 12 H 0.063 0.937 13 N -0.616 5.616 14 C 0.531 3.469 15 O -0.533 6.533 16 C -0.137 4.137 17 C -0.106 4.106 18 C -0.102 4.102 19 C -0.015 4.015 20 C -0.519 4.519 21 H 0.071 0.929 22 C 0.064 3.936 23 N -0.906 5.906 24 Si 0.879 3.121 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.264 1.264 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.016 0.984 48 H 0.011 0.989 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 -17.646 -24.385 31.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.025 3.975 3 H 0.099 0.901 4 C -0.159 4.159 5 C -0.126 4.126 6 H 0.104 0.896 7 C -0.143 4.143 8 C -0.158 4.158 9 C -0.155 4.155 10 C -0.157 4.157 11 C 0.032 3.968 12 H 0.081 0.919 13 N -0.351 5.351 14 C 0.322 3.678 15 O -0.409 6.409 16 C -0.177 4.177 17 C -0.144 4.144 18 C -0.139 4.139 19 C -0.053 4.053 20 C -0.556 4.556 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.546 5.546 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.189 1.189 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.034 0.966 48 H 0.029 0.971 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.364 -17.847 -23.641 31.066 hybrid contribution 0.403 -0.238 0.702 0.844 sum 9.768 -18.085 -22.939 30.801 Atomic orbital electron populations 1.22341 0.94580 1.02708 1.03318 1.22039 0.94541 0.96355 0.84539 0.90134 1.22625 0.97544 0.99539 0.96195 1.22278 0.97851 0.97087 0.95353 0.89645 1.21409 0.98776 0.95551 0.98572 1.21570 0.98209 1.00614 0.95436 1.21555 1.01045 0.97572 0.95321 1.21599 0.96827 0.97036 1.00269 1.21318 0.94200 0.87943 0.93380 0.91859 1.48431 1.56078 1.25243 1.05349 1.20710 0.80743 0.86211 0.80177 1.90666 1.48282 1.55677 1.46305 1.21896 1.00127 0.95322 1.00316 1.21498 1.01356 0.99636 0.91952 1.21470 0.98325 0.95054 0.99098 1.19576 0.96590 0.97042 0.92061 1.21185 1.28040 1.11189 0.95236 0.91117 1.25041 0.95183 0.94736 0.98665 1.69920 1.40939 1.24129 1.19595 0.86774 0.80312 0.81046 0.81179 1.20330 1.21469 1.18882 0.92181 0.91214 0.91174 0.90013 0.90274 0.91512 0.91416 0.92055 0.91967 0.91675 0.92146 0.91821 0.89505 0.89438 0.88716 0.91660 0.92003 0.92926 0.92877 0.96613 0.97090 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.24 37.16 0.34 -0.95 16 2 C 0.13 1.05 3.22 -65.74 -0.21 0.84 16 3 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 4 C -0.12 -0.75 6.07 -25.14 -0.15 -0.90 16 5 C -0.11 -0.78 2.64 -89.60 -0.24 -1.01 16 6 H 0.09 0.69 8.13 -51.93 -0.42 0.26 16 7 C -0.11 -0.62 5.61 -26.91 -0.15 -0.77 16 8 C -0.12 -0.77 5.84 -26.58 -0.16 -0.93 16 9 C -0.12 -0.93 5.83 -26.54 -0.15 -1.09 16 10 C -0.12 -1.29 4.97 -27.13 -0.13 -1.42 16 11 C 0.14 1.36 2.52 -68.11 -0.17 1.18 16 12 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 13 N -0.62 -6.95 2.99 -156.25 -0.47 -7.42 16 14 C 0.53 7.70 7.68 -10.98 -0.08 7.62 16 15 O -0.53 -9.59 14.07 5.56 0.08 -9.51 16 16 C -0.14 -1.87 4.27 -27.88 -0.12 -1.99 16 17 C -0.11 -1.86 4.53 -26.73 -0.12 -1.98 16 18 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 19 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 20 C -0.52 -15.24 9.66 -34.44 -0.33 -15.58 16 21 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 22 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 23 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 24 Si 0.88 22.60 27.47 -169.99 -4.67 17.93 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.07 0.60 5.19 -51.93 -0.27 0.33 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.44 7.83 -51.93 -0.41 0.03 16 33 H 0.07 0.39 7.98 -51.93 -0.41 -0.03 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 40 H 0.09 1.18 6.56 -51.93 -0.34 0.84 16 41 H 0.09 1.06 8.07 -51.92 -0.42 0.64 16 42 H 0.09 1.16 6.16 -51.93 -0.32 0.84 16 43 H 0.06 1.21 8.02 -51.93 -0.42 0.79 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 46 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 48 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 49 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -33.40 368.65 -10.02 -43.42 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -9.26 Total: -4.29 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -2.03 Total: -17.83 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.31 Total: -35.26 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.40 -10.02 -43.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588369607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.772 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds