Wall clock time and date at job start Tue Mar 31 2020 07:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47359 * 2 1 4 4 C 1.52999 * 109.47279 * 239.99781 * 2 1 3 5 5 C 1.52998 * 109.47076 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47344 * 59.99685 * 5 4 2 7 7 C 1.52999 * 109.47291 * 300.00183 * 6 5 4 8 8 H 1.09000 * 109.47104 * 299.99741 * 7 6 5 9 9 C 1.52999 * 109.47291 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47134 * 64.99786 * 9 7 6 11 11 O 1.21283 * 120.00193 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00212 * 180.02562 * 10 9 7 13 13 C 1.46929 * 120.62879 * 0.02562 * 12 10 9 14 14 C 1.53188 * 108.77635 * 233.61096 * 13 12 10 15 15 C 1.53041 * 109.31280 * 305.36756 * 14 13 12 16 16 C 1.53036 * 109.53938 * 61.36488 * 15 14 13 17 17 H 1.08993 * 109.49878 * 58.62085 * 16 15 14 18 18 C 1.50704 * 109.49524 * 178.68433 * 16 15 14 19 19 H 1.08005 * 119.99655 * 114.44706 * 18 16 15 20 20 C 1.37870 * 120.00191 * 294.44151 * 18 16 15 21 21 N 1.31523 * 120.00094 * 163.93006 * 20 18 16 22 22 Si 1.86800 * 120.00018 * 343.65926 * 20 18 16 23 23 H 1.48497 * 109.46880 * 270.27204 * 22 20 18 24 24 H 1.48497 * 109.47384 * 30.27181 * 22 20 18 25 25 H 1.48510 * 109.47258 * 150.27124 * 22 20 18 26 26 C 1.46933 * 120.60807 * 180.02562 * 12 10 9 27 27 C 1.52997 * 109.47001 * 60.00041 * 7 6 5 28 28 H 1.09000 * 109.47367 * 300.00157 * 1 2 3 29 29 H 1.09001 * 109.46677 * 59.99823 * 1 2 3 30 30 H 1.08995 * 109.46668 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46951 * 299.99634 * 4 2 1 32 32 H 1.08993 * 109.47192 * 60.00279 * 4 2 1 33 33 H 1.09000 * 109.47164 * 180.02562 * 5 4 2 34 34 H 1.09008 * 109.46889 * 299.99748 * 5 4 2 35 35 H 1.09000 * 109.46876 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47275 * 60.00229 * 6 5 4 37 37 H 1.08999 * 109.46765 * 305.00169 * 9 7 6 38 38 H 1.08992 * 109.47241 * 185.00015 * 9 7 6 39 39 H 1.08994 * 109.58638 * 113.82241 * 13 12 10 40 40 H 1.09005 * 109.58499 * 353.39592 * 13 12 10 41 41 H 1.08999 * 109.49932 * 185.41420 * 14 13 12 42 42 H 1.09003 * 109.49934 * 65.31528 * 14 13 12 43 43 H 1.08998 * 109.45893 * 301.33794 * 15 14 13 44 44 H 1.09001 * 109.44861 * 181.37980 * 15 14 13 45 45 H 0.96996 * 119.99288 * 354.53650 * 21 20 18 46 46 H 1.08997 * 109.61235 * 6.61664 * 26 12 10 47 47 H 1.09000 * 109.56043 * 246.19131 * 26 12 10 48 48 H 1.09000 * 109.47437 * 59.99904 * 27 7 6 49 49 H 1.09002 * 109.47081 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0796 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 1 3.9332 0.3055 1.2499 9 6 4.0785 -1.4439 2.4990 10 6 5.5805 -1.3386 2.5631 11 8 6.1844 -0.7451 1.6948 12 7 6.2527 -1.9049 3.5848 13 6 5.5352 -2.6286 4.6432 14 6 5.9460 -2.0508 6.0012 15 6 7.4703 -2.0966 6.1305 16 6 8.1032 -1.2416 5.0304 17 1 7.7429 -0.2163 5.1139 18 6 9.6029 -1.2613 5.1783 19 1 10.2147 -1.7199 4.4155 20 6 10.1938 -0.6938 6.2871 21 7 11.4439 -0.9759 6.5829 22 14 9.2213 0.4816 7.3652 23 1 9.3925 1.8690 6.8644 24 1 7.7829 0.1148 7.3252 25 1 9.7156 0.3952 8.7629 26 6 7.7170 -1.8099 3.6608 27 6 2.0395 -0.7216 1.2493 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.6768 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.9334 -1.2353 -2.1390 34 1 3.9337 0.3058 -1.2487 35 1 5.1696 -1.4432 0.0009 36 1 3.7159 -2.4708 0.0003 37 1 3.7894 -2.4939 2.4549 38 1 3.6438 -0.9843 3.3865 39 1 5.7944 -3.6865 4.6027 40 1 4.4608 -2.5078 4.5047 41 1 5.4953 -2.6410 6.7991 42 1 5.6056 -1.0180 6.0752 43 1 7.8123 -3.1268 6.0318 44 1 7.7636 -1.7086 7.1060 45 1 11.9254 -1.6426 6.0685 46 1 8.0821 -1.1491 2.8746 47 1 8.1538 -2.8012 3.5399 48 1 1.6759 -1.7491 1.2491 49 1 1.6762 -0.2073 2.1391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911061.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:31 Heat of formation + Delta-G solvation = -82.626779 kcal Electronic energy + Delta-G solvation = -24650.227070 eV Core-core repulsion = 21382.009760 eV Total energy + Delta-G solvation = -3268.217311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.11502 -38.71052 -36.91767 -33.64811 -33.33613 -31.96232 -31.64200 -30.50493 -27.66511 -26.45298 -24.80059 -24.48415 -22.11640 -21.53219 -21.11321 -19.86465 -19.50876 -18.33954 -17.50631 -16.73521 -15.53877 -15.33859 -15.21730 -14.66265 -14.39736 -14.18689 -13.85062 -13.62243 -13.57029 -13.23998 -12.86097 -12.78029 -12.53560 -12.52928 -12.18434 -12.04315 -11.94956 -11.64308 -11.39400 -11.37755 -11.06033 -10.88351 -10.82322 -10.68882 -10.48982 -10.37403 -10.22745 -10.04951 -10.01877 -9.82321 -9.50847 -9.19398 -8.77152 -8.29385 -8.08336 -6.44852 -4.08642 2.99677 3.40331 3.43231 3.44892 3.58339 4.48512 4.50037 4.55068 4.59349 4.84591 4.94451 5.07729 5.14564 5.17302 5.25794 5.32325 5.36442 5.39007 5.40987 5.47103 5.54622 5.56479 5.59045 5.65616 5.72097 5.73393 5.84625 5.91370 5.92351 6.03283 6.11244 6.13457 6.15125 6.17607 6.23434 6.24853 6.41191 6.47715 6.50453 6.56923 6.73735 6.86926 6.92059 7.24069 7.48092 7.89979 8.09735 8.37095 8.59529 8.88314 9.59498 10.93017 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.003357 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.954036 B = 8338.415742 C = 8575.210969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.119 4.119 7 C -0.070 4.070 8 H 0.077 0.923 9 C -0.136 4.136 10 C 0.508 3.492 11 O -0.545 6.545 12 N -0.610 5.610 13 C 0.111 3.889 14 C -0.139 4.139 15 C -0.117 4.117 16 C 0.013 3.987 17 H 0.024 0.976 18 C -0.598 4.598 19 H 0.057 0.943 20 C 0.034 3.966 21 N -0.907 5.907 22 Si 1.043 2.957 23 H -0.287 1.287 24 H -0.271 1.271 25 H -0.288 1.288 26 C 0.127 3.873 27 C -0.109 4.109 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.268 0.732 46 H 0.082 0.918 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.492 -2.310 -9.327 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.089 4.089 8 H 0.096 0.904 9 C -0.176 4.176 10 C 0.296 3.704 11 O -0.424 6.424 12 N -0.342 5.342 13 C -0.013 4.013 14 C -0.177 4.177 15 C -0.155 4.155 16 C -0.007 4.007 17 H 0.042 0.958 18 C -0.636 4.636 19 H 0.075 0.925 20 C -0.171 4.171 21 N -0.541 5.541 22 Si 0.871 3.129 23 H -0.214 1.214 24 H -0.196 1.196 25 H -0.214 1.214 26 C 0.006 3.994 27 C -0.146 4.146 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.028 -1.015 -8.471 23.622 hybrid contribution -0.053 -1.136 -1.119 1.595 sum -22.081 -2.150 -9.590 24.169 Atomic orbital electron populations 1.21833 0.95505 1.01609 1.01464 1.21123 0.95038 0.99807 0.95108 0.91243 1.21605 0.95996 1.00324 0.97154 1.21502 0.94985 1.01046 0.97966 1.21700 1.02630 0.97980 0.93354 1.20899 0.94171 1.00440 0.93373 0.90424 1.21768 0.93039 1.02618 1.00198 1.20594 0.89816 0.78568 0.81376 1.90633 1.70301 1.42876 1.38545 1.48400 1.08871 1.53612 1.23344 1.21688 0.95840 0.95900 0.87840 1.22017 0.99419 1.00828 0.95464 1.21999 0.91407 1.01057 1.01031 1.19339 0.97022 0.94482 0.89882 0.95759 1.21908 0.90117 1.42909 1.08653 0.92499 1.25734 0.96752 0.98061 0.96564 1.70804 1.11159 1.32060 1.40093 0.84110 0.75988 0.76503 0.76275 1.21382 1.19623 1.21373 1.21786 0.76233 1.00847 1.00547 1.21661 0.95003 1.00541 0.97416 0.92788 0.92904 0.92834 0.92247 0.92454 0.92360 0.92012 0.89762 0.92958 0.89424 0.89270 0.91763 0.90716 0.91907 0.92195 0.92818 0.92322 0.92168 0.89940 0.92618 0.92045 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.79 2.72 -90.61 -0.25 -1.04 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -0.99 5.20 -26.73 -0.14 -1.13 16 5 C -0.12 -1.23 5.92 -26.73 -0.16 -1.38 16 6 C -0.12 -1.43 4.94 -26.73 -0.13 -1.56 16 7 C -0.07 -0.80 1.84 -90.62 -0.17 -0.97 16 8 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 9 C -0.14 -1.62 3.52 -27.88 -0.10 -1.71 16 10 C 0.51 8.51 7.42 -10.99 -0.08 8.43 16 11 O -0.55 -10.98 13.38 5.55 0.07 -10.91 16 12 N -0.61 -10.60 2.97 -172.74 -0.51 -11.11 16 13 C 0.11 1.54 6.34 -3.71 -0.02 1.52 16 14 C -0.14 -2.18 6.08 -26.61 -0.16 -2.35 16 15 C -0.12 -2.39 4.55 -26.69 -0.12 -2.51 16 16 C 0.01 0.29 1.80 -91.63 -0.16 0.13 16 17 H 0.02 0.60 6.74 -51.93 -0.35 0.25 16 18 C -0.60 -16.61 8.84 -34.44 -0.30 -16.91 16 19 H 0.06 1.70 7.99 -52.48 -0.42 1.28 16 20 C 0.03 0.97 5.34 -17.82 -0.10 0.87 16 21 N -0.91 -27.77 13.70 55.43 0.76 -27.01 16 22 Si 1.04 25.07 26.24 -169.99 -4.46 20.61 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -5.89 5.52 56.52 0.31 -5.58 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.13 2.68 5.66 -3.69 -0.02 2.66 16 27 C -0.11 -0.98 4.48 -26.73 -0.12 -1.10 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.08 1.27 5.95 -51.93 -0.31 0.96 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.88 7.94 -51.93 -0.41 0.47 16 38 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.26 5.06 -51.93 -0.26 1.00 16 45 H 0.27 8.17 8.73 -40.82 -0.36 7.82 16 46 H 0.08 1.91 7.01 -51.93 -0.36 1.54 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -30.93 361.15 -9.64 -40.56 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -9.24 Total: 0.19 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -1.69 Total: -17.77 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.25 Total: -38.12 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -4.46 Total: 20.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.93 -9.64 -40.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911061.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.063 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds