Wall clock time and date at job start Tue Mar 31 2020 07:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47359 * 2 1 4 4 C 1.52999 * 109.47279 * 239.99781 * 2 1 3 5 5 C 1.52998 * 109.47076 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47344 * 59.99685 * 5 4 2 7 7 C 1.52999 * 109.47291 * 300.00183 * 6 5 4 8 8 H 1.09000 * 109.47104 * 299.99741 * 7 6 5 9 9 C 1.52999 * 109.47291 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47134 * 64.99786 * 9 7 6 11 11 O 1.21283 * 120.00193 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00212 * 180.02562 * 10 9 7 13 13 C 1.46929 * 120.62879 * 0.02562 * 12 10 9 14 14 C 1.53188 * 108.77635 * 233.61096 * 13 12 10 15 15 C 1.53041 * 109.31280 * 305.36756 * 14 13 12 16 16 C 1.53036 * 109.53938 * 61.36488 * 15 14 13 17 17 H 1.08993 * 109.49878 * 58.62085 * 16 15 14 18 18 C 1.50704 * 109.49524 * 178.68433 * 16 15 14 19 19 H 1.08005 * 119.99655 * 114.44706 * 18 16 15 20 20 C 1.37870 * 120.00191 * 294.44151 * 18 16 15 21 21 N 1.31523 * 120.00094 * 163.93006 * 20 18 16 22 22 Si 1.86800 * 120.00018 * 343.65926 * 20 18 16 23 23 H 1.48497 * 109.46880 * 270.27204 * 22 20 18 24 24 H 1.48497 * 109.47384 * 30.27181 * 22 20 18 25 25 H 1.48510 * 109.47258 * 150.27124 * 22 20 18 26 26 C 1.46933 * 120.60807 * 180.02562 * 12 10 9 27 27 C 1.52997 * 109.47001 * 60.00041 * 7 6 5 28 28 H 1.09000 * 109.47367 * 300.00157 * 1 2 3 29 29 H 1.09001 * 109.46677 * 59.99823 * 1 2 3 30 30 H 1.08995 * 109.46668 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46951 * 299.99634 * 4 2 1 32 32 H 1.08993 * 109.47192 * 60.00279 * 4 2 1 33 33 H 1.09000 * 109.47164 * 180.02562 * 5 4 2 34 34 H 1.09008 * 109.46889 * 299.99748 * 5 4 2 35 35 H 1.09000 * 109.46876 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47275 * 60.00229 * 6 5 4 37 37 H 1.08999 * 109.46765 * 305.00169 * 9 7 6 38 38 H 1.08992 * 109.47241 * 185.00015 * 9 7 6 39 39 H 1.08994 * 109.58638 * 113.82241 * 13 12 10 40 40 H 1.09005 * 109.58499 * 353.39592 * 13 12 10 41 41 H 1.08999 * 109.49932 * 185.41420 * 14 13 12 42 42 H 1.09003 * 109.49934 * 65.31528 * 14 13 12 43 43 H 1.08998 * 109.45893 * 301.33794 * 15 14 13 44 44 H 1.09001 * 109.44861 * 181.37980 * 15 14 13 45 45 H 0.96996 * 119.99288 * 354.53650 * 21 20 18 46 46 H 1.08997 * 109.61235 * 6.61664 * 26 12 10 47 47 H 1.09000 * 109.56043 * 246.19131 * 26 12 10 48 48 H 1.09000 * 109.47437 * 59.99904 * 27 7 6 49 49 H 1.09002 * 109.47081 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0796 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 1 3.9332 0.3055 1.2499 9 6 4.0785 -1.4439 2.4990 10 6 5.5805 -1.3386 2.5631 11 8 6.1844 -0.7451 1.6948 12 7 6.2527 -1.9049 3.5848 13 6 5.5352 -2.6286 4.6432 14 6 5.9460 -2.0508 6.0012 15 6 7.4703 -2.0966 6.1305 16 6 8.1032 -1.2416 5.0304 17 1 7.7429 -0.2163 5.1139 18 6 9.6029 -1.2613 5.1783 19 1 10.2147 -1.7199 4.4155 20 6 10.1938 -0.6938 6.2871 21 7 11.4439 -0.9759 6.5829 22 14 9.2213 0.4816 7.3652 23 1 9.3925 1.8690 6.8644 24 1 7.7829 0.1148 7.3252 25 1 9.7156 0.3952 8.7629 26 6 7.7170 -1.8099 3.6608 27 6 2.0395 -0.7216 1.2493 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 1.6768 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.9334 -1.2353 -2.1390 34 1 3.9337 0.3058 -1.2487 35 1 5.1696 -1.4432 0.0009 36 1 3.7159 -2.4708 0.0003 37 1 3.7894 -2.4939 2.4549 38 1 3.6438 -0.9843 3.3865 39 1 5.7944 -3.6865 4.6027 40 1 4.4608 -2.5078 4.5047 41 1 5.4953 -2.6410 6.7991 42 1 5.6056 -1.0180 6.0752 43 1 7.8123 -3.1268 6.0318 44 1 7.7636 -1.7086 7.1060 45 1 11.9254 -1.6426 6.0685 46 1 8.0821 -1.1491 2.8746 47 1 8.1538 -2.8012 3.5399 48 1 1.6759 -1.7491 1.2491 49 1 1.6762 -0.2073 2.1391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911061.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:30 Heat of formation + Delta-G solvation = -100.022890 kcal Electronic energy + Delta-G solvation = -24650.981422 eV Core-core repulsion = 21382.009760 eV Total energy + Delta-G solvation = -3268.971663 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35656 -39.69116 -38.34178 -35.43743 -34.31356 -33.46936 -32.65833 -32.08244 -28.73942 -27.14204 -26.54099 -25.93572 -23.06682 -22.94144 -22.14930 -21.03125 -20.63040 -19.88404 -19.40891 -18.01996 -16.84881 -16.50845 -16.19944 -16.05778 -15.45315 -15.21842 -15.13821 -14.90213 -14.73529 -14.47326 -14.38990 -14.29619 -13.75852 -13.70955 -13.23114 -13.14137 -12.93958 -12.71839 -12.65617 -12.46435 -12.32016 -12.12578 -11.91683 -11.84730 -11.83000 -11.65005 -11.50573 -11.29264 -11.27851 -11.08439 -10.82718 -10.81002 -10.54064 -10.42598 -9.54676 -8.75031 -6.40091 1.44677 1.49842 1.69312 1.72008 2.13126 2.47799 3.03621 3.58254 3.71280 3.81715 3.96446 4.05193 4.13104 4.19456 4.24630 4.31995 4.34202 4.39949 4.49966 4.55440 4.58722 4.64141 4.67361 4.77862 4.79441 4.81445 4.86151 4.89664 4.92660 4.98849 5.01703 5.07516 5.13006 5.17293 5.23288 5.26046 5.32739 5.39030 5.45114 5.46422 5.49980 5.51574 5.60064 5.68180 5.71106 5.99488 6.08637 6.52518 6.59756 7.28914 7.36895 8.60655 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.028051 B = 0.003357 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.954036 B = 8338.415742 C = 8575.210969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.056 0.944 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.068 4.068 8 H 0.049 0.951 9 C -0.125 4.125 10 C 0.500 3.500 11 O -0.590 6.590 12 N -0.613 5.613 13 C 0.106 3.894 14 C -0.132 4.132 15 C -0.117 4.117 16 C 0.013 3.987 17 H 0.016 0.984 18 C -0.603 4.603 19 H 0.014 0.986 20 C -0.018 4.018 21 N -0.940 5.940 22 Si 1.083 2.917 23 H -0.284 1.284 24 H -0.231 1.231 25 H -0.284 1.284 26 C 0.138 3.862 27 C -0.101 4.101 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.252 0.748 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.078 0.922 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.620 -2.958 -8.237 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.075 0.925 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.087 4.087 8 H 0.067 0.933 9 C -0.165 4.165 10 C 0.290 3.710 11 O -0.471 6.471 12 N -0.345 5.345 13 C -0.015 4.015 14 C -0.170 4.170 15 C -0.155 4.155 16 C -0.006 4.006 17 H 0.034 0.966 18 C -0.642 4.642 19 H 0.033 0.967 20 C -0.215 4.215 21 N -0.576 5.576 22 Si 0.904 3.096 23 H -0.210 1.210 24 H -0.154 1.154 25 H -0.210 1.210 26 C 0.015 3.985 27 C -0.138 4.138 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.195 -1.692 -7.392 28.233 hybrid contribution 1.665 -0.964 -1.601 2.503 sum -25.530 -2.656 -8.993 27.198 Atomic orbital electron populations 1.21789 0.94001 1.02269 1.01916 1.21133 0.96215 0.99048 0.94881 0.92511 1.21572 0.94097 1.01102 0.97776 1.21492 0.96713 0.99872 0.97465 1.21638 1.00194 0.99124 0.94584 1.20869 0.96192 0.98656 0.92994 0.93262 1.21841 0.88446 1.04842 1.01349 1.21623 0.91965 0.77198 0.80190 1.90630 1.71691 1.44636 1.40163 1.48462 1.06964 1.54267 1.24849 1.22030 0.98026 0.95926 0.85518 1.21990 0.95162 1.02029 0.97861 1.21855 0.95368 0.99601 0.98637 1.19268 0.93931 0.94970 0.92473 0.96557 1.22174 0.92921 1.41774 1.07296 0.96734 1.27209 0.96840 0.99238 0.98255 1.70933 1.12562 1.33083 1.41039 0.83649 0.76948 0.74407 0.74559 1.21024 1.15412 1.20971 1.21263 0.79669 0.99305 0.98251 1.21616 0.92428 1.01745 0.98040 0.92285 0.92626 0.92013 0.91224 0.91754 0.92248 0.93662 0.93699 0.91527 0.86296 0.86514 0.90486 0.85940 0.87986 0.92028 0.93426 0.93385 0.93873 0.93305 0.93474 0.90382 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 71.98 0.66 -0.90 16 2 C -0.09 -1.37 2.72 -10.79 -0.03 -1.40 16 3 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -1.65 5.20 30.59 0.16 -1.49 16 5 C -0.12 -2.41 5.92 30.59 0.18 -2.23 16 6 C -0.12 -2.73 4.94 30.59 0.15 -2.58 16 7 C -0.07 -1.42 1.84 -10.80 -0.02 -1.44 16 8 H 0.05 1.31 7.96 -2.39 -0.02 1.29 16 9 C -0.13 -2.49 3.52 29.85 0.11 -2.38 16 10 C 0.50 16.09 7.42 87.66 0.65 16.74 16 11 O -0.59 -24.58 13.38 -3.04 -0.04 -24.62 16 12 N -0.61 -20.28 2.97 -818.81 -2.43 -22.71 16 13 C 0.11 2.47 6.34 86.36 0.55 3.01 16 14 C -0.13 -3.53 6.08 30.67 0.19 -3.35 16 15 C -0.12 -4.54 4.55 30.62 0.14 -4.40 16 16 C 0.01 0.63 1.80 -11.45 -0.02 0.61 16 17 H 0.02 0.79 6.74 -2.39 -0.02 0.78 16 18 C -0.60 -35.12 8.84 25.60 0.23 -34.89 16 19 H 0.01 0.93 7.99 -2.91 -0.02 0.91 16 20 C -0.02 -1.04 5.34 84.65 0.45 -0.59 16 21 N -0.94 -60.03 13.70 21.45 0.29 -59.73 16 22 Si 1.08 50.44 26.24 68.60 1.80 52.24 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.23 -9.20 5.52 99.48 0.55 -8.65 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 C 0.14 6.02 5.66 86.37 0.49 6.50 16 27 C -0.10 -1.43 4.48 30.60 0.14 -1.29 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.04 1.40 5.95 -2.39 -0.01 1.39 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.70 7.94 -2.39 -0.02 1.68 16 38 H 0.12 1.76 7.69 -2.39 -0.02 1.74 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.12 1.75 5.93 -2.38 -0.01 1.74 16 41 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.05 1.95 5.06 -2.39 -0.01 1.94 16 45 H 0.25 16.36 8.73 -92.71 -0.81 15.55 16 46 H 0.05 2.41 7.01 -2.39 -0.02 2.39 16 47 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -74.17 361.15 4.33 -69.85 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.69 Total: 15.05 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 4.02 Total: -30.07 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -2.14 Total: -82.44 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.04 Total: -24.62 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 1.80 Total: 52.24 kcal Total: -74.17 4.33 -69.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911061.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.177 kcal (2) G-P(sol) polarization free energy of solvation -74.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds