Wall clock time and date at job start Tue Mar 31 2020 07:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 8 8 H 1.08996 * 109.47452 * 300.00000 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 7 6 5 10 10 C 1.50708 * 109.47329 * 65.00103 * 9 7 6 11 11 O 1.21286 * 119.99561 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00007 * 179.97438 * 10 9 7 13 13 C 1.46923 * 120.63303 * 359.97438 * 12 10 9 14 14 C 1.53190 * 108.77376 * 126.37207 * 13 12 10 15 15 C 1.53040 * 109.31579 * 54.63425 * 14 13 12 16 16 C 1.53041 * 109.53872 * 298.63450 * 15 14 13 17 17 H 1.08997 * 109.49876 * 301.41902 * 16 15 14 18 18 C 1.50696 * 109.49949 * 181.31225 * 16 15 14 19 19 H 1.08001 * 120.00569 * 240.00446 * 18 16 15 20 20 C 1.37883 * 119.99640 * 60.00250 * 18 16 15 21 21 N 1.31510 * 120.00188 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99970 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47109 * 59.99951 * 22 20 18 24 24 H 1.48498 * 109.47166 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47044 * 300.00359 * 22 20 18 26 26 C 1.46925 * 120.62754 * 179.72366 * 12 10 9 27 27 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 28 28 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 30 30 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 32 32 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 34 34 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 35 35 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47611 * 59.99933 * 6 5 4 37 37 H 1.09000 * 109.47325 * 185.00280 * 9 7 6 38 38 H 1.09006 * 109.47500 * 305.00368 * 9 7 6 39 39 H 1.09006 * 109.58907 * 246.15389 * 13 12 10 40 40 H 1.08994 * 109.59039 * 6.44003 * 13 12 10 41 41 H 1.09000 * 109.50200 * 174.58920 * 14 13 12 42 42 H 1.08998 * 109.49663 * 294.68328 * 14 13 12 43 43 H 1.09000 * 109.45805 * 58.65466 * 15 14 13 44 44 H 1.09002 * 109.46072 * 178.62895 * 15 14 13 45 45 H 0.96999 * 120.00179 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58860 * 353.41997 * 26 12 10 47 47 H 1.09004 * 109.58809 * 113.84411 * 26 12 10 48 48 H 1.09002 * 109.47153 * 299.99641 * 27 2 1 49 49 H 1.08996 * 109.46952 * 59.99813 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2486 9 6 4.0805 -1.4420 2.4978 10 6 5.5824 -1.3358 2.5613 11 8 6.1855 -0.7412 1.6931 12 7 6.2553 -1.9008 3.5833 13 6 5.5386 -2.6228 4.6433 14 6 6.1410 -4.0248 4.7790 15 6 7.6497 -3.9075 5.0077 16 6 8.2977 -3.2177 3.8051 17 1 8.0907 -3.7912 2.9016 18 6 9.7872 -3.1315 4.0169 19 1 10.2743 -2.1680 4.0418 20 6 10.5281 -4.2830 4.1790 21 7 9.9349 -5.4563 4.1493 22 14 12.3746 -4.1764 4.4409 23 1 12.6557 -3.3927 5.6706 24 1 12.9337 -5.5443 4.5864 25 1 13.0023 -3.5071 3.2732 26 6 7.7200 -1.8109 3.6557 27 6 2.0400 -0.7214 1.2491 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6765 -1.7488 -1.2495 32 1 1.6765 -0.2072 -2.1393 33 1 3.9331 -1.2340 -2.1400 34 1 3.9329 0.3071 -1.2499 35 1 5.1704 -1.4417 -0.0010 36 1 3.7174 -2.4695 -0.0005 37 1 3.6459 -0.9826 3.3856 38 1 3.7921 -2.4923 2.4541 39 1 5.6444 -2.0869 5.5865 40 1 4.4829 -2.7001 4.3834 41 1 5.6835 -4.5371 5.6253 42 1 5.9544 -4.5908 3.8663 43 1 7.8360 -3.3203 5.9070 44 1 8.0771 -4.9028 5.1289 45 1 10.4562 -6.2664 4.2630 46 1 8.1037 -1.3547 2.7431 47 1 8.0070 -1.2074 4.5169 48 1 1.6768 -0.2076 2.1392 49 1 1.6767 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:35 Heat of formation + Delta-G solvation = -83.449747 kcal Electronic energy + Delta-G solvation = -24607.273676 eV Core-core repulsion = 21339.020679 eV Total energy + Delta-G solvation = -3268.252997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98212 -38.58747 -36.70618 -33.57186 -33.27641 -31.84307 -31.27687 -30.25385 -27.48570 -26.37312 -25.05282 -24.22068 -22.05628 -21.68346 -21.05037 -19.82161 -19.48025 -18.13791 -16.79636 -16.15155 -15.36053 -15.25462 -15.06494 -14.59856 -14.42794 -14.17986 -13.71105 -13.63760 -13.45287 -13.03918 -12.78295 -12.53067 -12.43092 -12.38489 -12.01579 -11.92331 -11.87204 -11.54034 -11.31534 -10.99400 -10.96281 -10.83476 -10.80353 -10.75718 -10.41981 -10.34638 -10.13365 -9.99462 -9.92682 -9.73710 -9.42485 -9.13279 -8.80939 -8.38156 -7.85197 -6.01884 -4.09053 3.12126 3.31313 3.35657 3.38507 3.59881 4.42391 4.56676 4.61748 4.67763 4.94980 5.02941 5.16864 5.23219 5.27136 5.35601 5.41599 5.45246 5.47066 5.53933 5.61670 5.64089 5.68289 5.72936 5.78507 5.80535 5.81967 5.92475 5.98674 6.11624 6.18935 6.22220 6.25134 6.33303 6.33997 6.42087 6.49805 6.56839 6.62159 6.68624 6.83259 7.01151 7.18179 7.34360 7.68928 7.92845 8.06457 8.08396 8.38123 8.72420 8.94698 9.55774 11.03579 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.003210 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.284144 B = 8719.420597 C = 9151.320547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.069 4.069 8 H 0.076 0.924 9 C -0.136 4.136 10 C 0.508 3.492 11 O -0.549 6.549 12 N -0.605 5.605 13 C 0.109 3.891 14 C -0.135 4.135 15 C -0.113 4.113 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.514 4.514 19 H 0.056 0.944 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.117 3.883 27 C -0.109 4.109 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.035 0.965 44 H 0.095 0.905 45 H 0.261 0.739 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.303 6.877 -3.804 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.087 4.087 8 H 0.094 0.906 9 C -0.176 4.176 10 C 0.296 3.704 11 O -0.428 6.428 12 N -0.337 5.337 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.151 4.151 16 C 0.021 3.979 17 H 0.046 0.954 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.004 4.004 27 C -0.146 4.146 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.934 6.994 -4.235 19.710 hybrid contribution 0.980 -0.180 0.357 1.058 sum -16.954 6.814 -3.878 18.679 Atomic orbital electron populations 1.21835 0.95560 1.01637 1.01377 1.21117 0.94977 0.99735 0.95194 0.91328 1.21610 0.96071 1.00363 0.97062 1.21497 0.94898 1.00948 0.98100 1.21708 1.02797 0.98069 0.93217 1.20892 0.94046 1.00275 0.93525 0.90581 1.21764 0.93168 1.02724 0.99958 1.20562 0.89764 0.78797 0.81281 1.90619 1.70367 1.43454 1.38326 1.48334 1.08785 1.52934 1.23672 1.21728 0.95279 0.93854 0.90528 1.22000 0.99782 0.94606 1.00936 1.21631 0.90382 1.04397 0.98654 1.18886 0.94400 0.89616 0.94968 0.95379 1.21047 0.91809 0.92763 1.49695 0.92560 1.24935 0.98434 0.95370 0.95058 1.69859 1.35512 0.97358 1.50084 0.86642 0.85476 0.77013 0.78783 1.20258 1.21307 1.20223 1.21884 0.76330 1.00808 1.01357 1.21671 0.95098 1.00586 0.97283 0.92802 0.92855 0.92934 0.92194 0.92518 0.92328 0.92112 0.89623 0.92849 0.89517 0.89302 0.92074 0.91127 0.92527 0.92420 0.94625 0.88651 0.92927 0.90368 0.92924 0.92179 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.09 -0.83 2.72 -90.62 -0.25 -1.08 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 5 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 6 C -0.12 -1.59 4.94 -26.73 -0.13 -1.72 16 7 C -0.07 -0.83 1.84 -90.60 -0.17 -1.00 16 8 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 9 C -0.14 -1.73 3.52 -27.88 -0.10 -1.83 16 10 C 0.51 8.95 7.42 -10.98 -0.08 8.87 16 11 O -0.55 -11.43 13.38 5.55 0.07 -11.36 16 12 N -0.61 -11.13 2.98 -173.00 -0.52 -11.64 16 13 C 0.11 1.67 6.34 -3.71 -0.02 1.65 16 14 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 15 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 16 C 0.04 1.00 2.24 -91.85 -0.21 0.79 16 17 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 19 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -25.01 11.31 55.43 0.63 -24.39 16 22 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.12 2.55 5.63 -3.91 -0.02 2.53 16 27 C -0.11 -1.04 4.49 -26.71 -0.12 -1.16 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.42 5.95 -51.93 -0.31 1.11 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 38 H 0.09 1.05 7.70 -51.93 -0.40 0.65 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.85 5.93 -51.93 -0.31 0.55 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.08 1.84 7.01 -51.93 -0.36 1.47 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -29.15 365.88 -10.30 -39.46 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -9.25 Total: 0.52 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.74 Total: -14.26 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.11 Total: -36.03 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.15 -10.30 -39.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.992 kcal (2) G-P(sol) polarization free energy of solvation -29.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds