Wall clock time and date at job start Tue Mar 31 2020 07:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 8 8 H 1.08996 * 109.47452 * 300.00000 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 7 6 5 10 10 C 1.50708 * 109.47329 * 65.00103 * 9 7 6 11 11 O 1.21286 * 119.99561 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00007 * 179.97438 * 10 9 7 13 13 C 1.46923 * 120.63303 * 359.97438 * 12 10 9 14 14 C 1.53190 * 108.77376 * 126.37207 * 13 12 10 15 15 C 1.53040 * 109.31579 * 54.63425 * 14 13 12 16 16 C 1.53041 * 109.53872 * 298.63450 * 15 14 13 17 17 H 1.08997 * 109.49876 * 301.41902 * 16 15 14 18 18 C 1.50696 * 109.49949 * 181.31225 * 16 15 14 19 19 H 1.08001 * 120.00569 * 240.00446 * 18 16 15 20 20 C 1.37883 * 119.99640 * 60.00250 * 18 16 15 21 21 N 1.31510 * 120.00188 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99970 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47109 * 59.99951 * 22 20 18 24 24 H 1.48498 * 109.47166 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47044 * 300.00359 * 22 20 18 26 26 C 1.46925 * 120.62754 * 179.72366 * 12 10 9 27 27 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 28 28 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 30 30 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 32 32 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 34 34 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 35 35 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47611 * 59.99933 * 6 5 4 37 37 H 1.09000 * 109.47325 * 185.00280 * 9 7 6 38 38 H 1.09006 * 109.47500 * 305.00368 * 9 7 6 39 39 H 1.09006 * 109.58907 * 246.15389 * 13 12 10 40 40 H 1.08994 * 109.59039 * 6.44003 * 13 12 10 41 41 H 1.09000 * 109.50200 * 174.58920 * 14 13 12 42 42 H 1.08998 * 109.49663 * 294.68328 * 14 13 12 43 43 H 1.09000 * 109.45805 * 58.65466 * 15 14 13 44 44 H 1.09002 * 109.46072 * 178.62895 * 15 14 13 45 45 H 0.96999 * 120.00179 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58860 * 353.41997 * 26 12 10 47 47 H 1.09004 * 109.58809 * 113.84411 * 26 12 10 48 48 H 1.09002 * 109.47153 * 299.99641 * 27 2 1 49 49 H 1.08996 * 109.46952 * 59.99813 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2486 9 6 4.0805 -1.4420 2.4978 10 6 5.5824 -1.3358 2.5613 11 8 6.1855 -0.7412 1.6931 12 7 6.2553 -1.9008 3.5833 13 6 5.5386 -2.6228 4.6433 14 6 6.1410 -4.0248 4.7790 15 6 7.6497 -3.9075 5.0077 16 6 8.2977 -3.2177 3.8051 17 1 8.0907 -3.7912 2.9016 18 6 9.7872 -3.1315 4.0169 19 1 10.2743 -2.1680 4.0418 20 6 10.5281 -4.2830 4.1790 21 7 9.9349 -5.4563 4.1493 22 14 12.3746 -4.1764 4.4409 23 1 12.6557 -3.3927 5.6706 24 1 12.9337 -5.5443 4.5864 25 1 13.0023 -3.5071 3.2732 26 6 7.7200 -1.8109 3.6557 27 6 2.0400 -0.7214 1.2491 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6765 -1.7488 -1.2495 32 1 1.6765 -0.2072 -2.1393 33 1 3.9331 -1.2340 -2.1400 34 1 3.9329 0.3071 -1.2499 35 1 5.1704 -1.4417 -0.0010 36 1 3.7174 -2.4695 -0.0005 37 1 3.6459 -0.9826 3.3856 38 1 3.7921 -2.4923 2.4541 39 1 5.6444 -2.0869 5.5865 40 1 4.4829 -2.7001 4.3834 41 1 5.6835 -4.5371 5.6253 42 1 5.9544 -4.5908 3.8663 43 1 7.8360 -3.3203 5.9070 44 1 8.0771 -4.9028 5.1289 45 1 10.4562 -6.2664 4.2630 46 1 8.1037 -1.3547 2.7431 47 1 8.0070 -1.2074 4.5169 48 1 1.6768 -0.2076 2.1392 49 1 1.6767 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911062.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:34 Heat of formation + Delta-G solvation = -97.743815 kcal Electronic energy + Delta-G solvation = -24607.893513 eV Core-core repulsion = 21339.020679 eV Total energy + Delta-G solvation = -3268.872834 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29783 -39.64338 -38.23648 -35.37594 -34.28631 -33.10307 -32.61854 -31.93817 -28.62812 -27.13694 -26.91432 -25.72440 -23.36792 -22.90950 -22.17386 -21.01839 -20.61668 -19.60161 -18.51506 -17.82788 -16.76550 -16.64197 -16.26462 -16.07023 -15.43208 -15.17453 -15.07215 -14.83309 -14.78222 -14.54383 -14.22452 -13.81951 -13.77400 -13.57683 -13.19802 -13.04020 -12.85811 -12.71834 -12.66944 -12.62711 -12.45177 -12.11759 -11.94849 -11.84806 -11.83020 -11.63613 -11.59930 -11.30099 -11.25486 -11.06403 -10.83165 -10.81147 -10.46864 -10.39274 -9.42946 -8.12005 -6.27522 1.39709 1.41328 1.48786 1.75220 2.18997 2.43093 3.14091 3.61263 3.73029 3.82086 3.98669 4.11489 4.19504 4.27226 4.33822 4.34759 4.42583 4.51922 4.54181 4.59669 4.62998 4.67293 4.76781 4.81609 4.84221 4.87151 4.89065 4.93254 4.98643 5.01894 5.08607 5.13278 5.14519 5.24342 5.30009 5.33348 5.41127 5.46172 5.50147 5.51733 5.58109 5.60106 5.61973 5.69121 5.92624 6.13679 6.33846 6.65094 6.82155 7.32829 7.40625 8.91372 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.003210 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.284144 B = 8719.420597 C = 9151.320547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.065 4.065 8 H 0.055 0.945 9 C -0.126 4.126 10 C 0.499 3.501 11 O -0.590 6.590 12 N -0.612 5.612 13 C 0.110 3.890 14 C -0.128 4.128 15 C -0.107 4.107 16 C 0.042 3.958 17 H -0.017 1.017 18 C -0.541 4.541 19 H 0.051 0.949 20 C 0.017 3.983 21 N -0.913 5.913 22 Si 0.955 3.045 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.277 1.277 26 C 0.131 3.869 27 C -0.101 4.101 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.036 0.964 44 H 0.061 0.939 45 H 0.262 0.738 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.077 0.923 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.134 7.159 -2.589 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.079 0.921 4 C -0.146 4.146 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.084 4.084 8 H 0.074 0.926 9 C -0.166 4.166 10 C 0.289 3.711 11 O -0.472 6.472 12 N -0.343 5.343 13 C -0.012 4.012 14 C -0.166 4.166 15 C -0.145 4.145 16 C 0.023 3.977 17 H 0.002 0.998 18 C -0.579 4.579 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.552 5.552 22 Si 0.780 3.220 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.202 1.202 26 C 0.008 3.992 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.794 7.275 -3.006 22.234 hybrid contribution 1.919 -0.271 -0.087 1.940 sum -18.875 7.004 -3.093 20.369 Atomic orbital electron populations 1.21789 0.93982 1.02172 1.02024 1.21125 0.96208 0.99155 0.94635 0.92051 1.21580 0.94034 1.00998 0.98000 1.21478 0.96751 0.99970 0.97182 1.21651 1.00136 0.98951 0.95067 1.20859 0.96170 0.98753 0.92631 0.92597 1.21837 0.88750 1.04349 1.01629 1.21572 0.91928 0.77560 0.80023 1.90611 1.71726 1.45133 1.39689 1.48431 1.07241 1.53634 1.25023 1.21979 0.96983 0.91755 0.90465 1.21911 0.96306 0.96729 1.01641 1.21429 0.93861 1.01896 0.97295 1.18781 0.93890 0.90947 0.94057 0.99840 1.21427 0.93637 0.92757 1.50088 0.93118 1.25692 1.02735 0.95032 0.94751 1.69997 1.36949 0.97805 1.50429 0.85667 0.80247 0.77246 0.78837 1.19230 1.20636 1.20219 1.21399 0.79206 0.98615 0.99982 1.21628 0.92398 1.01586 0.98259 0.92285 0.92109 0.92497 0.91614 0.91534 0.92514 0.93177 0.93913 0.92264 0.86098 0.87329 0.90186 0.86541 0.89190 0.93779 0.94507 0.92001 0.92893 0.93281 0.92477 0.90485 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.19 71.98 0.66 -1.02 16 2 C -0.09 -1.44 2.72 -10.79 -0.03 -1.47 16 3 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.11 -1.85 5.20 30.60 0.16 -1.69 16 5 C -0.12 -2.62 5.92 30.59 0.18 -2.44 16 6 C -0.12 -3.19 4.94 30.59 0.15 -3.04 16 7 C -0.07 -1.48 1.84 -10.78 -0.02 -1.50 16 8 H 0.06 1.50 7.96 -2.39 -0.02 1.49 16 9 C -0.13 -2.85 3.52 29.85 0.11 -2.75 16 10 C 0.50 17.38 7.42 87.66 0.65 18.03 16 11 O -0.59 -25.67 13.38 -3.05 -0.04 -25.71 16 12 N -0.61 -22.10 2.98 -819.64 -2.44 -24.54 16 13 C 0.11 3.01 6.34 86.36 0.55 3.55 16 14 C -0.13 -4.28 6.08 30.67 0.19 -4.09 16 15 C -0.11 -4.83 4.96 30.62 0.15 -4.68 16 16 C 0.04 2.18 2.24 -11.59 -0.03 2.16 16 17 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 18 C -0.54 -30.58 8.56 25.60 0.22 -30.36 16 19 H 0.05 2.83 7.75 -2.91 -0.02 2.81 16 20 C 0.02 0.96 5.30 84.66 0.45 1.41 16 21 N -0.91 -52.85 11.31 21.45 0.24 -52.61 16 22 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C 0.13 5.90 5.63 86.23 0.49 6.39 16 27 C -0.10 -1.60 4.49 30.61 0.14 -1.46 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.50 5.95 -2.39 -0.01 1.48 16 36 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.12 1.98 7.94 -2.39 -0.02 1.96 16 38 H 0.11 2.10 7.70 -2.38 -0.02 2.09 16 39 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.12 2.18 5.93 -2.39 -0.01 2.17 16 41 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.06 3.23 6.04 -2.39 -0.01 3.21 16 45 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.05 2.46 7.01 -2.39 -0.02 2.44 16 47 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -68.34 365.88 4.68 -63.66 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.88 Total: 15.96 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 4.01 Total: -22.96 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.20 Total: -77.15 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.04 Total: -25.71 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.34 4.68 -63.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911062.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.082 kcal (2) G-P(sol) polarization free energy of solvation -68.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds