Wall clock time and date at job start Tue Mar 31 2020 07:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46784 * 2 1 4 4 C 1.52999 * 109.46718 * 240.00308 * 2 1 3 5 5 C 1.52998 * 109.47131 * 299.99801 * 4 2 1 6 6 C 1.53003 * 109.47127 * 300.00217 * 5 4 2 7 7 C 1.52996 * 109.47086 * 60.00186 * 6 5 4 8 8 H 1.08999 * 109.47167 * 59.99401 * 7 6 5 9 9 C 1.53003 * 109.47086 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.46931 * 294.99841 * 9 7 6 11 11 O 1.21279 * 119.99808 * 0.02562 * 10 9 7 12 12 N 1.34778 * 120.00023 * 180.02562 * 10 9 7 13 13 C 1.46933 * 120.62741 * 0.02562 * 12 10 9 14 14 C 1.53188 * 108.77495 * 233.58614 * 13 12 10 15 15 C 1.53034 * 109.31404 * 305.36890 * 14 13 12 16 16 C 1.53346 * 109.61010 * 61.37429 * 15 14 13 17 17 H 1.09002 * 109.47277 * 58.54691 * 16 15 14 18 18 C 1.50698 * 109.68835 * 178.74685 * 16 15 14 19 19 H 1.07999 * 119.99981 * 119.75163 * 18 16 15 20 20 C 1.37881 * 119.99920 * 299.75668 * 18 16 15 21 21 N 1.31519 * 119.99728 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99956 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47750 * 59.99343 * 22 20 18 24 24 H 1.48499 * 109.46986 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46767 * 299.99317 * 22 20 18 26 26 C 1.46919 * 120.63255 * 179.97438 * 12 10 9 27 27 C 1.52990 * 109.47075 * 120.00116 * 2 1 3 28 28 H 1.08997 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46927 * 299.99869 * 1 2 3 30 30 H 1.08997 * 109.47343 * 59.99309 * 1 2 3 31 31 H 1.09003 * 109.46951 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47270 * 60.00404 * 4 2 1 33 33 H 1.09000 * 109.47171 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.47269 * 60.00540 * 5 4 2 35 35 H 1.09003 * 109.46929 * 300.00105 * 6 5 4 36 36 H 1.09002 * 109.46768 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.46646 * 174.99801 * 9 7 6 38 38 H 1.09001 * 109.47188 * 54.99944 * 9 7 6 39 39 H 1.08994 * 109.58580 * 353.38021 * 13 12 10 40 40 H 1.09002 * 109.58042 * 113.80101 * 13 12 10 41 41 H 1.08994 * 109.49494 * 65.32533 * 14 13 12 42 42 H 1.09007 * 109.49349 * 185.38405 * 14 13 12 43 43 H 1.08999 * 109.45836 * 181.38851 * 15 14 13 44 44 H 1.09001 * 109.45754 * 301.35734 * 15 14 13 45 45 H 0.97003 * 119.99504 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58751 * 246.20189 * 26 12 10 47 47 H 1.08996 * 109.58750 * 6.48373 * 26 12 10 48 48 H 1.08996 * 109.47678 * 300.00024 * 27 2 1 49 49 H 1.09005 * 109.46994 * 179.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1638 1.2491 8 1 0.4400 -2.1637 1.2491 9 6 2.0406 -2.8847 2.4984 10 6 1.4402 -4.2655 2.5621 11 8 0.6793 -4.6365 1.6936 12 7 1.7488 -5.0880 3.5842 13 6 2.6686 -4.6525 4.6440 14 6 3.7893 -5.6879 4.7805 15 6 3.1755 -7.0708 5.0101 16 6 2.3072 -7.4549 3.8059 17 1 2.9170 -7.4515 2.9024 18 6 1.7265 -8.8294 4.0164 19 1 0.6553 -8.9647 4.0438 20 6 2.5627 -9.9143 4.1743 21 7 3.8671 -9.7495 4.1406 22 14 1.8428 -11.6183 4.4346 23 1 0.9988 -11.9826 3.2685 24 1 2.9440 -12.6045 4.5754 25 1 1.0136 -11.6223 5.6665 26 6 1.1711 -6.4367 3.6604 27 6 2.0400 -0.7212 1.2492 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.1300 -0.7208 -1.2496 32 1 1.6766 -0.2073 -2.1393 33 1 1.8936 -2.6776 -2.1391 34 1 0.4400 -2.1637 -1.2493 35 1 3.1300 -2.8849 -0.0002 36 1 1.6762 -3.9125 0.0000 37 1 1.7522 -2.3217 3.3860 38 1 3.1269 -2.9626 2.4545 39 1 3.0954 -3.6843 4.3823 40 1 2.1278 -4.5728 5.5871 41 1 4.3853 -5.7013 3.8680 42 1 4.4251 -5.4265 5.6265 43 1 3.9713 -7.8056 5.1321 44 1 2.5595 -7.0500 5.9091 45 1 4.4553 -10.5127 4.2521 46 1 0.5086 -6.5022 4.5235 47 1 0.6078 -6.6449 2.7508 48 1 1.6767 -0.2075 2.1392 49 1 3.1300 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:39 Heat of formation + Delta-G solvation = -79.179287 kcal Electronic energy + Delta-G solvation = -24798.648757 eV Core-core repulsion = 21530.580941 eV Total energy + Delta-G solvation = -3268.067816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07168 -38.76707 -36.69478 -33.53631 -33.01593 -31.54566 -31.25528 -30.23159 -27.40794 -26.78931 -25.05365 -24.20939 -22.27486 -21.76443 -21.39909 -19.62942 -18.71134 -18.12878 -16.75604 -16.15326 -15.67114 -15.33123 -15.01326 -14.61051 -14.40456 -14.16936 -13.83615 -13.52645 -13.40891 -12.90406 -12.78100 -12.63267 -12.50480 -12.24072 -12.03827 -11.91554 -11.73443 -11.44886 -11.40348 -11.05030 -10.96832 -10.85951 -10.82219 -10.75382 -10.38547 -10.17649 -10.03136 -9.99289 -9.92722 -9.72805 -9.41995 -9.12597 -8.81407 -8.38086 -7.84938 -6.01951 -4.08924 3.12313 3.31435 3.35774 3.38635 3.60258 4.42574 4.61276 4.64721 4.66994 4.93583 5.07664 5.17104 5.26524 5.29274 5.35730 5.36427 5.47672 5.54342 5.58235 5.60676 5.64198 5.69482 5.73498 5.80101 5.83489 5.89716 5.94723 6.00099 6.11621 6.21073 6.24880 6.26057 6.34011 6.35066 6.41896 6.49314 6.60047 6.63250 6.68841 6.82553 7.00809 7.18126 7.33286 7.68867 7.92692 8.06183 8.07847 8.38049 8.72555 8.94769 9.55865 11.03694 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.028147 B = 0.003332 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.551337 B = 8401.444455 C = 8781.477984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.080 0.920 9 C -0.137 4.137 10 C 0.508 3.492 11 O -0.549 6.549 12 N -0.605 5.605 13 C 0.109 3.891 14 C -0.135 4.135 15 C -0.113 4.113 16 C 0.042 3.958 17 H 0.029 0.971 18 C -0.515 4.515 19 H 0.056 0.944 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C 0.116 3.884 27 C -0.110 4.110 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.094 0.906 44 H 0.035 0.965 45 H 0.261 0.739 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 19.140 -3.788 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.158 4.158 7 C -0.089 4.089 8 H 0.098 0.902 9 C -0.177 4.177 10 C 0.296 3.704 11 O -0.428 6.428 12 N -0.337 5.337 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.151 4.151 16 C 0.022 3.978 17 H 0.047 0.953 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.005 4.005 27 C -0.147 4.147 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.206 18.828 -4.223 19.334 hybrid contribution -0.136 -0.966 0.363 1.041 sum -1.343 17.862 -3.860 18.324 Atomic orbital electron populations 1.21958 0.95423 1.02515 1.01077 1.21059 0.95944 0.98635 0.95154 0.91701 1.21579 1.00341 0.96150 0.97110 1.21537 1.01036 0.94973 0.98044 1.21706 0.99747 1.01070 0.93238 1.20929 1.01229 0.93264 0.93461 0.90206 1.21772 1.01886 0.94004 1.00017 1.20560 0.81662 0.86869 0.81297 1.90616 1.37133 1.76715 1.38302 1.48335 1.45647 1.16071 1.23683 1.21730 0.91482 0.97645 0.90525 1.21996 0.96697 0.97674 1.00942 1.21674 1.01212 0.93485 0.98692 1.19014 0.91822 0.91993 0.94922 0.95332 1.21046 0.92975 0.91571 1.49754 0.92552 1.24939 0.94826 0.98984 0.95049 1.69872 1.02186 1.30672 1.50063 0.86640 0.78617 0.83865 0.78782 1.20216 1.21315 1.20262 1.21973 0.97538 0.79614 1.01333 1.21635 1.00467 0.95307 0.97337 0.91588 0.93020 0.93147 0.92248 0.92516 0.92449 0.91765 0.92894 0.89637 0.89545 0.89334 0.91121 0.92066 0.92416 0.92524 0.88770 0.94625 0.92935 0.92932 0.90373 0.92174 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.50 37.16 0.32 -1.07 16 2 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.11 -1.08 5.45 -26.73 -0.15 -1.22 16 5 C -0.12 -1.33 5.65 -26.73 -0.15 -1.48 16 6 C -0.12 -1.58 4.94 -26.73 -0.13 -1.71 16 7 C -0.07 -0.85 1.56 -90.62 -0.14 -0.99 16 8 H 0.08 1.08 6.24 -51.93 -0.32 0.75 16 9 C -0.14 -1.74 3.52 -27.88 -0.10 -1.84 16 10 C 0.51 8.93 7.42 -10.99 -0.08 8.85 16 11 O -0.55 -11.39 13.38 5.56 0.07 -11.31 16 12 N -0.61 -11.11 2.97 -172.74 -0.51 -11.63 16 13 C 0.11 1.67 6.34 -3.71 -0.02 1.65 16 14 C -0.13 -2.38 6.08 -26.62 -0.16 -2.54 16 15 C -0.11 -2.52 4.98 -26.53 -0.13 -2.65 16 16 C 0.04 1.03 2.26 -91.46 -0.21 0.82 16 17 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.51 -14.01 8.57 -34.44 -0.30 -14.30 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 21 N -0.89 -25.01 11.34 55.43 0.63 -24.39 16 22 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.12 2.54 5.65 -3.68 -0.02 2.51 16 27 C -0.11 -1.05 4.73 -26.73 -0.13 -1.18 16 28 H 0.07 0.69 4.81 -51.93 -0.25 0.44 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.41 5.95 -51.93 -0.31 1.10 16 37 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 38 H 0.09 1.04 7.69 -51.93 -0.40 0.64 16 39 H 0.07 0.85 5.93 -51.93 -0.31 0.55 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.09 2.39 6.08 -51.93 -0.32 2.08 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -29.13 358.97 -10.11 -39.23 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.90 Total: 1.15 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.79 Total: -14.61 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.12 Total: -36.01 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.31 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.13 -10.11 -39.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.948 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds