Wall clock time and date at job start Tue Mar 31 2020 07:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46784 * 2 1 4 4 C 1.52999 * 109.46718 * 240.00308 * 2 1 3 5 5 C 1.52998 * 109.47131 * 299.99801 * 4 2 1 6 6 C 1.53003 * 109.47127 * 300.00217 * 5 4 2 7 7 C 1.52996 * 109.47086 * 60.00186 * 6 5 4 8 8 H 1.08999 * 109.47167 * 59.99401 * 7 6 5 9 9 C 1.53003 * 109.47086 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.46931 * 294.99841 * 9 7 6 11 11 O 1.21279 * 119.99808 * 0.02562 * 10 9 7 12 12 N 1.34778 * 120.00023 * 180.02562 * 10 9 7 13 13 C 1.46933 * 120.62741 * 0.02562 * 12 10 9 14 14 C 1.53188 * 108.77495 * 233.58614 * 13 12 10 15 15 C 1.53034 * 109.31404 * 305.36890 * 14 13 12 16 16 C 1.53346 * 109.61010 * 61.37429 * 15 14 13 17 17 H 1.09002 * 109.47277 * 58.54691 * 16 15 14 18 18 C 1.50698 * 109.68835 * 178.74685 * 16 15 14 19 19 H 1.07999 * 119.99981 * 119.75163 * 18 16 15 20 20 C 1.37881 * 119.99920 * 299.75668 * 18 16 15 21 21 N 1.31519 * 119.99728 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99956 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47750 * 59.99343 * 22 20 18 24 24 H 1.48499 * 109.46986 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46767 * 299.99317 * 22 20 18 26 26 C 1.46919 * 120.63255 * 179.97438 * 12 10 9 27 27 C 1.52990 * 109.47075 * 120.00116 * 2 1 3 28 28 H 1.08997 * 109.47065 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46927 * 299.99869 * 1 2 3 30 30 H 1.08997 * 109.47343 * 59.99309 * 1 2 3 31 31 H 1.09003 * 109.46951 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47270 * 60.00404 * 4 2 1 33 33 H 1.09000 * 109.47171 * 180.02562 * 5 4 2 34 34 H 1.08997 * 109.47269 * 60.00540 * 5 4 2 35 35 H 1.09003 * 109.46929 * 300.00105 * 6 5 4 36 36 H 1.09002 * 109.46768 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.46646 * 174.99801 * 9 7 6 38 38 H 1.09001 * 109.47188 * 54.99944 * 9 7 6 39 39 H 1.08994 * 109.58580 * 353.38021 * 13 12 10 40 40 H 1.09002 * 109.58042 * 113.80101 * 13 12 10 41 41 H 1.08994 * 109.49494 * 65.32533 * 14 13 12 42 42 H 1.09007 * 109.49349 * 185.38405 * 14 13 12 43 43 H 1.08999 * 109.45836 * 181.38851 * 15 14 13 44 44 H 1.09001 * 109.45754 * 301.35734 * 15 14 13 45 45 H 0.97003 * 119.99504 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.58751 * 246.20189 * 26 12 10 47 47 H 1.08996 * 109.58750 * 6.48373 * 26 12 10 48 48 H 1.08996 * 109.47678 * 300.00024 * 27 2 1 49 49 H 1.09005 * 109.46994 * 179.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1638 1.2491 8 1 0.4400 -2.1637 1.2491 9 6 2.0406 -2.8847 2.4984 10 6 1.4402 -4.2655 2.5621 11 8 0.6793 -4.6365 1.6936 12 7 1.7488 -5.0880 3.5842 13 6 2.6686 -4.6525 4.6440 14 6 3.7893 -5.6879 4.7805 15 6 3.1755 -7.0708 5.0101 16 6 2.3072 -7.4549 3.8059 17 1 2.9170 -7.4515 2.9024 18 6 1.7265 -8.8294 4.0164 19 1 0.6553 -8.9647 4.0438 20 6 2.5627 -9.9143 4.1743 21 7 3.8671 -9.7495 4.1406 22 14 1.8428 -11.6183 4.4346 23 1 0.9988 -11.9826 3.2685 24 1 2.9440 -12.6045 4.5754 25 1 1.0136 -11.6223 5.6665 26 6 1.1711 -6.4367 3.6604 27 6 2.0400 -0.7212 1.2492 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.1300 -0.7208 -1.2496 32 1 1.6766 -0.2073 -2.1393 33 1 1.8936 -2.6776 -2.1391 34 1 0.4400 -2.1637 -1.2493 35 1 3.1300 -2.8849 -0.0002 36 1 1.6762 -3.9125 0.0000 37 1 1.7522 -2.3217 3.3860 38 1 3.1269 -2.9626 2.4545 39 1 3.0954 -3.6843 4.3823 40 1 2.1278 -4.5728 5.5871 41 1 4.3853 -5.7013 3.8680 42 1 4.4251 -5.4265 5.6265 43 1 3.9713 -7.8056 5.1321 44 1 2.5595 -7.0500 5.9091 45 1 4.4553 -10.5127 4.2521 46 1 0.5086 -6.5022 4.5235 47 1 0.6078 -6.6449 2.7508 48 1 1.6767 -0.2075 2.1392 49 1 3.1300 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:38 Heat of formation + Delta-G solvation = -93.679351 kcal Electronic energy + Delta-G solvation = -24799.277527 eV Core-core repulsion = 21530.580941 eV Total energy + Delta-G solvation = -3268.696586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33403 -39.84540 -38.24168 -35.36357 -34.07678 -33.02506 -32.33631 -31.92052 -28.56325 -27.55668 -26.91827 -25.70913 -23.36459 -23.15138 -22.53844 -21.19805 -19.73207 -19.42121 -18.48410 -17.78291 -16.86535 -16.63906 -16.38745 -16.16824 -15.38219 -15.30145 -15.08538 -14.86610 -14.65685 -14.54184 -14.15202 -13.85298 -13.63635 -13.56376 -13.51141 -12.98760 -12.85123 -12.71908 -12.64378 -12.57573 -12.37664 -12.26142 -11.93829 -11.84177 -11.82026 -11.68650 -11.58753 -11.27659 -11.09364 -10.94428 -10.82906 -10.81083 -10.45646 -10.37108 -9.42365 -8.12141 -6.27462 1.39829 1.41523 1.48948 1.75840 2.19524 2.43252 3.14154 3.62610 3.76303 3.84067 3.96737 4.12032 4.23316 4.27555 4.33508 4.36122 4.44883 4.53964 4.54860 4.57022 4.63118 4.69126 4.71038 4.79207 4.84219 4.88840 4.89080 4.91208 4.99522 5.07112 5.09930 5.13716 5.17108 5.20431 5.30104 5.36027 5.41506 5.45685 5.49457 5.52492 5.59269 5.60551 5.65173 5.71879 5.92521 6.12718 6.33570 6.65456 6.82157 7.33374 7.40669 8.91447 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.028147 B = 0.003332 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.551337 B = 8401.444455 C = 8781.477984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 H 0.085 0.915 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.067 4.067 8 H 0.061 0.939 9 C -0.127 4.127 10 C 0.499 3.501 11 O -0.590 6.590 12 N -0.612 5.612 13 C 0.110 3.890 14 C -0.128 4.128 15 C -0.106 4.106 16 C 0.043 3.957 17 H -0.016 1.016 18 C -0.541 4.541 19 H 0.051 0.949 20 C 0.017 3.983 21 N -0.913 5.913 22 Si 0.955 3.045 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.267 1.267 26 C 0.130 3.870 27 C -0.104 4.104 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.262 0.738 46 H 0.057 0.943 47 H 0.049 0.951 48 H 0.077 0.923 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 21.997 -2.584 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 H 0.103 0.897 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.086 4.086 8 H 0.079 0.921 9 C -0.167 4.167 10 C 0.289 3.711 11 O -0.471 6.471 12 N -0.344 5.344 13 C -0.012 4.012 14 C -0.166 4.166 15 C -0.144 4.144 16 C 0.024 3.976 17 H 0.002 0.998 18 C -0.580 4.580 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.552 5.552 22 Si 0.780 3.220 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.192 1.192 26 C 0.007 3.993 27 C -0.141 4.141 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.561 21.711 -3.005 21.925 hybrid contribution -0.353 -1.907 -0.078 1.941 sum -0.913 19.804 -3.084 20.063 Atomic orbital electron populations 1.21945 0.95786 1.01386 1.01817 1.21094 0.95623 0.99479 0.94525 0.89711 1.21558 1.00673 0.94444 0.98082 1.21513 1.00454 0.96522 0.97022 1.21643 0.99866 0.99082 0.95149 1.20895 1.00185 0.95023 0.92453 0.92050 1.21849 1.02490 0.90596 1.01738 1.21572 0.80980 0.88479 0.80035 1.90608 1.39014 1.77845 1.39648 1.48433 1.46252 1.14639 1.25043 1.21980 0.90181 0.98535 0.90468 1.21910 0.97662 0.95371 1.01642 1.21470 0.99766 0.95873 0.97320 1.18910 0.92463 0.92230 0.94020 0.99812 1.21429 0.92953 0.93425 1.50145 0.93092 1.25699 0.95194 1.02592 0.94737 1.70010 1.03165 1.31585 1.50419 0.85661 0.78039 0.79418 0.78847 1.20196 1.20656 1.19227 1.21489 0.96325 0.81484 0.99988 1.21607 1.01107 0.93029 0.98346 0.93633 0.92248 0.92500 0.91592 0.91507 0.92801 0.92744 0.92399 0.94006 0.86166 0.87417 0.86561 0.90176 0.93790 0.89180 0.92138 0.94495 0.92908 0.92458 0.93270 0.90465 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.50 71.98 0.61 -1.86 16 2 C -0.09 -1.33 3.19 -10.80 -0.03 -1.36 16 3 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 4 C -0.11 -1.84 5.45 30.59 0.17 -1.67 16 5 C -0.12 -2.64 5.65 30.59 0.17 -2.46 16 6 C -0.12 -3.16 4.94 30.59 0.15 -3.01 16 7 C -0.07 -1.50 1.56 -10.79 -0.02 -1.52 16 8 H 0.06 1.63 6.24 -2.39 -0.01 1.61 16 9 C -0.13 -2.88 3.52 29.85 0.11 -2.77 16 10 C 0.50 17.37 7.42 87.66 0.65 18.02 16 11 O -0.59 -25.60 13.38 -3.03 -0.04 -25.64 16 12 N -0.61 -22.12 2.97 -818.81 -2.43 -24.55 16 13 C 0.11 3.01 6.34 86.36 0.55 3.56 16 14 C -0.13 -4.28 6.08 30.67 0.19 -4.09 16 15 C -0.11 -4.81 4.98 30.72 0.15 -4.66 16 16 C 0.04 2.21 2.26 -11.34 -0.03 2.19 16 17 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 18 C -0.54 -30.63 8.57 25.60 0.22 -30.41 16 19 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 20 C 0.02 0.95 5.31 84.65 0.45 1.40 16 21 N -0.91 -52.91 11.34 21.45 0.24 -52.66 16 22 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.13 5.87 5.65 86.38 0.49 6.35 16 27 C -0.10 -1.60 4.73 30.59 0.14 -1.45 16 28 H 0.04 0.93 4.81 -2.39 -0.01 0.91 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 1.31 6.43 -2.39 -0.02 1.29 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.47 5.95 -2.39 -0.01 1.45 16 37 H 0.12 1.97 7.94 -2.39 -0.02 1.95 16 38 H 0.11 2.09 7.69 -2.39 -0.02 2.08 16 39 H 0.12 2.19 5.93 -2.39 -0.01 2.17 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.06 3.15 6.08 -2.39 -0.01 3.14 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 46 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.05 2.46 7.00 -2.39 -0.02 2.44 16 48 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -68.43 358.97 4.66 -63.77 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.90 Total: 16.61 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.97 Total: -23.75 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.19 Total: -77.22 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.04 Total: -25.64 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -68.43 4.66 -63.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.909 kcal (2) G-P(sol) polarization free energy of solvation -68.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds