Wall clock time and date at job start Tue Mar 31 2020 07:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47385 * 239.99476 * 2 1 3 5 5 C 1.52993 * 109.47409 * 300.00444 * 4 2 1 6 6 C 1.53003 * 109.46971 * 299.99537 * 5 4 2 7 7 C 1.53006 * 109.47130 * 59.99963 * 6 5 4 8 8 H 1.09003 * 109.46639 * 59.99762 * 7 6 5 9 9 C 1.52995 * 109.47262 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47310 * 295.00335 * 9 7 6 11 11 O 1.21277 * 120.00105 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99862 * 179.97438 * 10 9 7 13 13 C 1.46920 * 120.63221 * 359.97438 * 12 10 9 14 14 C 1.53196 * 108.77435 * 126.41518 * 13 12 10 15 15 C 1.53037 * 109.31040 * 54.63686 * 14 13 12 16 16 C 1.53040 * 109.54181 * 298.63376 * 15 14 13 17 17 H 1.09003 * 109.49938 * 301.42120 * 16 15 14 18 18 C 1.50694 * 109.52973 * 181.33490 * 16 15 14 19 19 H 1.08000 * 120.00075 * 240.15175 * 18 16 15 20 20 C 1.37876 * 120.00039 * 60.14542 * 18 16 15 21 21 N 1.31514 * 120.00137 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00272 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47419 * 89.99534 * 22 20 18 24 24 H 1.48499 * 109.47346 * 210.00203 * 22 20 18 25 25 H 1.48512 * 109.46857 * 329.99913 * 22 20 18 26 26 C 1.46926 * 120.62827 * 180.02562 * 12 10 9 27 27 C 1.52995 * 109.46909 * 300.00325 * 7 6 5 28 28 H 1.08999 * 109.47358 * 300.00267 * 1 2 3 29 29 H 1.09003 * 109.47254 * 60.00483 * 1 2 3 30 30 H 1.09008 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46525 * 60.00203 * 4 2 1 32 32 H 1.08999 * 109.47389 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.47423 * 59.99313 * 5 4 2 34 34 H 1.08999 * 109.47213 * 179.97438 * 5 4 2 35 35 H 1.08994 * 109.47305 * 300.00296 * 6 5 4 36 36 H 1.08998 * 109.47434 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47391 * 175.00090 * 9 7 6 38 38 H 1.09003 * 109.46696 * 55.00382 * 9 7 6 39 39 H 1.08998 * 109.58534 * 6.63082 * 13 12 10 40 40 H 1.08995 * 109.70522 * 246.27224 * 13 12 10 41 41 H 1.08999 * 109.50112 * 174.59220 * 14 13 12 42 42 H 1.09004 * 109.49641 * 294.68461 * 14 13 12 43 43 H 1.09000 * 109.46257 * 58.65576 * 15 14 13 44 44 H 1.09003 * 109.45936 * 178.62016 * 15 14 13 45 45 H 0.96994 * 120.00172 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58617 * 353.36760 * 26 12 10 47 47 H 1.08995 * 109.59240 * 113.79537 * 26 12 10 48 48 H 1.09007 * 109.46592 * 179.97438 * 27 7 6 49 49 H 1.08994 * 109.47144 * 299.99433 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2494 8 1 0.4400 -2.1637 1.2493 9 6 2.0394 -2.8853 2.4986 10 6 1.4381 -4.2656 2.5618 11 8 0.6766 -4.6357 1.6935 12 7 1.7465 -5.0889 3.5834 13 6 2.6678 -4.6551 4.6425 14 6 1.9853 -4.8504 6.0001 15 6 1.5195 -6.3025 6.1281 16 6 0.5027 -6.6129 5.0273 17 1 -0.3432 -5.9305 5.1104 18 6 0.0197 -8.0328 5.1735 19 1 0.1717 -8.7402 4.3716 20 6 -0.6162 -8.4290 6.3309 21 7 -0.8016 -7.5676 7.3072 22 14 -1.2143 -10.1893 6.5125 23 1 -0.1390 -11.0180 7.1143 24 1 -2.4112 -10.2174 7.3909 25 1 -1.5682 -10.7321 5.1762 26 6 1.1687 -6.4377 3.6585 27 6 2.0399 -0.7212 1.2493 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 0.4400 -2.1638 -1.2491 34 1 1.8930 -2.6775 -2.1393 35 1 3.1299 -2.8850 0.0002 36 1 1.6763 -3.9125 0.0004 37 1 1.7511 -2.3224 3.3864 38 1 3.1257 -2.9638 2.4552 39 1 2.9128 -3.6020 4.5049 40 1 3.5798 -5.2507 4.6030 41 1 2.6917 -4.6231 6.7985 42 1 1.1254 -4.1846 6.0741 43 1 2.3764 -6.9689 6.0292 44 1 1.0553 -6.4503 7.1032 45 1 -1.2486 -7.8464 8.1216 46 1 0.4246 -6.5607 2.8715 47 1 1.9573 -7.1804 3.5379 48 1 1.6762 -0.2073 2.1391 49 1 3.1299 -0.7212 1.2493 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:43 Heat of formation + Delta-G solvation = -79.110971 kcal Electronic energy + Delta-G solvation = -24759.497371 eV Core-core repulsion = 21491.432518 eV Total energy + Delta-G solvation = -3268.064854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07810 -38.77722 -36.70625 -33.54557 -33.02250 -31.55877 -31.26263 -30.23396 -27.41229 -26.79171 -25.05370 -24.21503 -22.30038 -21.77199 -21.39596 -19.64703 -18.69967 -18.13704 -16.75757 -16.15086 -15.66842 -15.38551 -14.99221 -14.65573 -14.41911 -14.13124 -13.85136 -13.47990 -13.27169 -13.15380 -12.74457 -12.69882 -12.45152 -12.15948 -12.11585 -11.93342 -11.73998 -11.44645 -11.38786 -11.05922 -10.97949 -10.89380 -10.80519 -10.74137 -10.37102 -10.19485 -10.02306 -9.98931 -9.93731 -9.78976 -9.43923 -9.09081 -8.80843 -8.38347 -7.85219 -6.02029 -4.09050 3.12386 3.29451 3.36356 3.40108 3.60167 4.42503 4.60466 4.63969 4.65915 4.93228 5.06273 5.18334 5.26093 5.27910 5.34164 5.36052 5.45525 5.54020 5.59366 5.60306 5.63594 5.67558 5.73222 5.80309 5.82736 5.90755 5.93451 5.98606 6.11614 6.19512 6.24521 6.25170 6.32349 6.34018 6.42106 6.49427 6.57760 6.59056 6.68622 6.82600 7.00645 7.18111 7.34214 7.69123 7.92764 8.06338 8.08186 8.38117 8.72496 8.94906 9.55844 11.03527 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.028607 B = 0.003272 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.532483 B = 8556.302593 C = 8903.010125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.065 0.935 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.071 4.071 8 H 0.081 0.919 9 C -0.137 4.137 10 C 0.508 3.492 11 O -0.549 6.549 12 N -0.605 5.605 13 C 0.110 3.890 14 C -0.135 4.135 15 C -0.112 4.112 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.514 4.514 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.117 3.883 27 C -0.110 4.110 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.035 0.965 44 H 0.095 0.905 45 H 0.260 0.740 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.445 14.742 -10.193 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.156 4.156 7 C -0.090 4.090 8 H 0.099 0.901 9 C -0.177 4.177 10 C 0.296 3.704 11 O -0.428 6.428 12 N -0.337 5.337 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.150 4.150 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.552 4.552 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.004 4.004 27 C -0.147 4.147 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.963 14.544 -10.468 19.609 hybrid contribution -0.208 -0.925 0.432 1.042 sum 7.755 13.618 -10.036 18.610 Atomic orbital electron populations 1.21964 0.95341 1.02580 1.01157 1.21060 0.96019 0.98635 0.95087 0.91685 1.21574 1.00242 0.96132 0.97187 1.21538 1.01170 0.95011 0.97910 1.21696 0.99530 1.01023 0.93370 1.20935 1.01443 0.93276 0.93341 0.90068 1.21766 1.01572 0.94144 1.00171 1.20559 0.81606 0.86795 0.81423 1.90615 1.36756 1.76681 1.38710 1.48333 1.45877 1.16394 1.23127 1.21720 0.92277 0.98999 0.88381 1.22004 0.99619 1.01187 0.94525 1.21625 0.98188 0.90737 1.04481 1.18971 0.93600 0.96969 0.88340 0.95324 1.21087 1.37252 0.95479 1.01432 0.92506 1.24938 0.95641 0.97386 0.95868 1.69871 1.42699 1.34099 1.06138 0.86582 0.78309 0.84955 0.78096 1.20702 1.21245 1.19844 1.21973 0.97243 0.79709 1.01499 1.21633 1.00343 0.95327 0.97440 0.92922 0.93137 0.91566 0.92508 0.92315 0.91679 0.92531 0.93040 0.89755 0.89318 0.89559 0.91143 0.92072 0.92529 0.92415 0.94630 0.88699 0.92992 0.90351 0.92912 0.92069 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.50 37.15 0.32 -1.13 16 2 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -1.04 5.45 -26.74 -0.15 -1.18 16 5 C -0.12 -1.28 5.65 -26.73 -0.15 -1.43 16 6 C -0.12 -1.48 4.95 -26.73 -0.13 -1.61 16 7 C -0.07 -0.86 1.56 -90.62 -0.14 -1.00 16 8 H 0.08 1.14 6.24 -51.93 -0.32 0.81 16 9 C -0.14 -1.74 3.52 -27.89 -0.10 -1.84 16 10 C 0.51 8.93 7.41 -10.98 -0.08 8.85 16 11 O -0.55 -11.39 13.38 5.56 0.07 -11.31 16 12 N -0.61 -11.11 2.97 -172.75 -0.51 -11.63 16 13 C 0.11 1.67 6.34 -3.71 -0.02 1.65 16 14 C -0.14 -2.38 6.08 -26.61 -0.16 -2.54 16 15 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 16 C 0.04 0.99 2.25 -91.63 -0.21 0.79 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 18 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.12 2.54 5.66 -3.69 -0.02 2.52 16 27 C -0.11 -1.06 4.73 -26.73 -0.13 -1.18 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.72 4.81 -51.92 -0.25 0.47 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.30 5.95 -51.93 -0.31 1.00 16 37 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 38 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 39 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.08 1.84 7.00 -51.93 -0.36 1.47 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -29.15 358.90 -10.11 -39.26 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -8.90 Total: 1.01 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -1.78 Total: -14.50 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.11 Total: -36.01 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.15 -10.11 -39.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.854 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds