Wall clock time and date at job start Tue Mar 31 2020 07:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.46963 * 2 1 4 4 C 1.52999 * 109.47385 * 239.99476 * 2 1 3 5 5 C 1.52993 * 109.47409 * 300.00444 * 4 2 1 6 6 C 1.53003 * 109.46971 * 299.99537 * 5 4 2 7 7 C 1.53006 * 109.47130 * 59.99963 * 6 5 4 8 8 H 1.09003 * 109.46639 * 59.99762 * 7 6 5 9 9 C 1.52995 * 109.47262 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47310 * 295.00335 * 9 7 6 11 11 O 1.21277 * 120.00105 * 359.97438 * 10 9 7 12 12 N 1.34780 * 119.99862 * 179.97438 * 10 9 7 13 13 C 1.46920 * 120.63221 * 359.97438 * 12 10 9 14 14 C 1.53196 * 108.77435 * 126.41518 * 13 12 10 15 15 C 1.53037 * 109.31040 * 54.63686 * 14 13 12 16 16 C 1.53040 * 109.54181 * 298.63376 * 15 14 13 17 17 H 1.09003 * 109.49938 * 301.42120 * 16 15 14 18 18 C 1.50694 * 109.52973 * 181.33490 * 16 15 14 19 19 H 1.08000 * 120.00075 * 240.15175 * 18 16 15 20 20 C 1.37876 * 120.00039 * 60.14542 * 18 16 15 21 21 N 1.31514 * 120.00137 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00272 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47419 * 89.99534 * 22 20 18 24 24 H 1.48499 * 109.47346 * 210.00203 * 22 20 18 25 25 H 1.48512 * 109.46857 * 329.99913 * 22 20 18 26 26 C 1.46926 * 120.62827 * 180.02562 * 12 10 9 27 27 C 1.52995 * 109.46909 * 300.00325 * 7 6 5 28 28 H 1.08999 * 109.47358 * 300.00267 * 1 2 3 29 29 H 1.09003 * 109.47254 * 60.00483 * 1 2 3 30 30 H 1.09008 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46525 * 60.00203 * 4 2 1 32 32 H 1.08999 * 109.47389 * 179.97438 * 4 2 1 33 33 H 1.08999 * 109.47423 * 59.99313 * 5 4 2 34 34 H 1.08999 * 109.47213 * 179.97438 * 5 4 2 35 35 H 1.08994 * 109.47305 * 300.00296 * 6 5 4 36 36 H 1.08998 * 109.47434 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.47391 * 175.00090 * 9 7 6 38 38 H 1.09003 * 109.46696 * 55.00382 * 9 7 6 39 39 H 1.08998 * 109.58534 * 6.63082 * 13 12 10 40 40 H 1.08995 * 109.70522 * 246.27224 * 13 12 10 41 41 H 1.08999 * 109.50112 * 174.59220 * 14 13 12 42 42 H 1.09004 * 109.49641 * 294.68461 * 14 13 12 43 43 H 1.09000 * 109.46257 * 58.65576 * 15 14 13 44 44 H 1.09003 * 109.45936 * 178.62016 * 15 14 13 45 45 H 0.96994 * 120.00172 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58617 * 353.36760 * 26 12 10 47 47 H 1.08995 * 109.59240 * 113.79537 * 26 12 10 48 48 H 1.09007 * 109.46592 * 179.97438 * 27 7 6 49 49 H 1.08994 * 109.47144 * 299.99433 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2494 8 1 0.4400 -2.1637 1.2493 9 6 2.0394 -2.8853 2.4986 10 6 1.4381 -4.2656 2.5618 11 8 0.6766 -4.6357 1.6935 12 7 1.7465 -5.0889 3.5834 13 6 2.6678 -4.6551 4.6425 14 6 1.9853 -4.8504 6.0001 15 6 1.5195 -6.3025 6.1281 16 6 0.5027 -6.6129 5.0273 17 1 -0.3432 -5.9305 5.1104 18 6 0.0197 -8.0328 5.1735 19 1 0.1717 -8.7402 4.3716 20 6 -0.6162 -8.4290 6.3309 21 7 -0.8016 -7.5676 7.3072 22 14 -1.2143 -10.1893 6.5125 23 1 -0.1390 -11.0180 7.1143 24 1 -2.4112 -10.2174 7.3909 25 1 -1.5682 -10.7321 5.1762 26 6 1.1687 -6.4377 3.6585 27 6 2.0399 -0.7212 1.2493 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2494 33 1 0.4400 -2.1638 -1.2491 34 1 1.8930 -2.6775 -2.1393 35 1 3.1299 -2.8850 0.0002 36 1 1.6763 -3.9125 0.0004 37 1 1.7511 -2.3224 3.3864 38 1 3.1257 -2.9638 2.4552 39 1 2.9128 -3.6020 4.5049 40 1 3.5798 -5.2507 4.6030 41 1 2.6917 -4.6231 6.7985 42 1 1.1254 -4.1846 6.0741 43 1 2.3764 -6.9689 6.0292 44 1 1.0553 -6.4503 7.1032 45 1 -1.2486 -7.8464 8.1216 46 1 0.4246 -6.5607 2.8715 47 1 1.9573 -7.1804 3.5379 48 1 1.6762 -0.2073 2.1391 49 1 3.1299 -0.7212 1.2493 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911064.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:42 Heat of formation + Delta-G solvation = -93.601977 kcal Electronic energy + Delta-G solvation = -24760.125748 eV Core-core repulsion = 21491.432518 eV Total energy + Delta-G solvation = -3268.693231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.33509 -39.84634 -38.25205 -35.37096 -34.07785 -33.02392 -32.33060 -31.91901 -28.56494 -27.56602 -26.91782 -25.71112 -23.36719 -23.14245 -22.52114 -21.21936 -19.66569 -19.47103 -18.48113 -17.78483 -16.88908 -16.57977 -16.42012 -16.20666 -15.36966 -15.28402 -15.06870 -14.81927 -14.68712 -14.50702 -14.24153 -13.90810 -13.58447 -13.57476 -13.46545 -12.99050 -12.87590 -12.72102 -12.62314 -12.57381 -12.36753 -12.25203 -11.92328 -11.85283 -11.81883 -11.68186 -11.59742 -11.27284 -11.10356 -10.96985 -10.80641 -10.80091 -10.46980 -10.34160 -9.42613 -8.12083 -6.27450 1.39238 1.40430 1.50634 1.75917 2.19346 2.43215 3.14135 3.62659 3.76149 3.84783 3.97102 4.12554 4.23277 4.27952 4.33492 4.36602 4.44681 4.54428 4.55491 4.57060 4.63591 4.69461 4.71224 4.79569 4.84497 4.88187 4.90200 4.91268 4.98907 5.06040 5.10939 5.13649 5.16868 5.21158 5.30120 5.36813 5.41156 5.45902 5.49928 5.52780 5.59479 5.60732 5.66541 5.72019 5.92689 6.13316 6.33884 6.65446 6.82386 7.33334 7.40774 8.91526 Molecular weight = 293.21amu Principal moments of inertia in cm(-1) A = 0.028607 B = 0.003272 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.532483 B = 8556.302593 C = 8903.010125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.069 4.069 8 H 0.053 0.947 9 C -0.127 4.127 10 C 0.499 3.501 11 O -0.590 6.590 12 N -0.612 5.612 13 C 0.110 3.890 14 C -0.128 4.128 15 C -0.106 4.106 16 C 0.042 3.958 17 H -0.016 1.016 18 C -0.540 4.540 19 H 0.050 0.950 20 C 0.017 3.983 21 N -0.913 5.913 22 Si 0.955 3.045 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.273 1.273 26 C 0.130 3.870 27 C -0.104 4.104 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.061 0.939 45 H 0.262 0.738 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.942 16.703 -10.198 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.088 4.088 8 H 0.071 0.929 9 C -0.166 4.166 10 C 0.290 3.710 11 O -0.471 6.471 12 N -0.344 5.344 13 C -0.012 4.012 14 C -0.166 4.166 15 C -0.144 4.144 16 C 0.023 3.977 17 H 0.002 0.998 18 C -0.578 4.578 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.198 1.198 26 C 0.008 3.992 27 C -0.141 4.141 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.482 16.525 -10.468 22.193 hybrid contribution -1.057 -1.562 0.404 1.928 sum 9.426 14.964 -10.063 20.348 Atomic orbital electron populations 1.21957 0.96177 1.01290 1.01657 1.21097 0.95309 0.99571 0.94778 0.89749 1.21548 1.00858 0.94481 0.97748 1.21520 1.00273 0.96537 0.97290 1.21625 1.00211 0.99068 0.94513 1.20902 0.99888 0.95146 0.92872 0.92867 1.21839 1.03000 0.90499 1.01294 1.21566 0.80880 0.88299 0.80301 1.90608 1.38564 1.77728 1.40224 1.48429 1.46353 1.15086 1.24484 1.21968 0.91552 1.02086 0.85559 1.21916 1.00128 0.97066 0.97490 1.21420 0.97130 0.94434 1.01433 1.18869 0.93086 0.94726 0.91050 0.99765 1.21454 1.38047 0.96810 1.01516 0.93135 1.25694 0.95726 1.01283 0.95539 1.70007 1.43007 1.35750 1.06429 0.85602 0.78014 0.80354 0.77966 1.19570 1.20842 1.19757 1.21488 0.96642 0.82469 0.98649 1.21604 1.01334 0.93057 0.98110 0.92683 0.92418 0.93753 0.91620 0.91134 0.93240 0.92330 0.91572 0.93645 0.87261 0.86355 0.86580 0.90209 0.89197 0.93753 0.94517 0.92058 0.92915 0.93247 0.92458 0.91149 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.50 71.98 0.61 -2.10 16 2 C -0.09 -1.36 3.19 -10.79 -0.03 -1.39 16 3 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.11 -1.71 5.45 30.59 0.17 -1.54 16 5 C -0.12 -2.49 5.65 30.59 0.17 -2.32 16 6 C -0.12 -2.82 4.95 30.60 0.15 -2.67 16 7 C -0.07 -1.57 1.56 -10.79 -0.02 -1.58 16 8 H 0.05 1.51 6.24 -2.39 -0.01 1.50 16 9 C -0.13 -2.87 3.52 29.85 0.11 -2.77 16 10 C 0.50 17.38 7.41 87.66 0.65 18.03 16 11 O -0.59 -25.60 13.38 -3.02 -0.04 -25.64 16 12 N -0.61 -22.11 2.97 -818.85 -2.43 -24.54 16 13 C 0.11 3.01 6.34 86.37 0.55 3.56 16 14 C -0.13 -4.28 6.08 30.67 0.19 -4.10 16 15 C -0.11 -4.80 4.96 30.62 0.15 -4.65 16 16 C 0.04 2.16 2.25 -11.45 -0.03 2.13 16 17 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 18 C -0.54 -30.54 8.56 25.60 0.22 -30.32 16 19 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 20 C 0.02 0.94 5.30 84.65 0.45 1.39 16 21 N -0.91 -52.82 11.32 21.45 0.24 -52.58 16 22 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.13 5.88 5.66 86.38 0.49 6.37 16 27 C -0.10 -1.63 4.73 30.59 0.14 -1.49 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.98 4.81 -2.38 -0.01 0.96 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.17 6.43 -2.39 -0.02 1.16 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.04 1.46 5.95 -2.39 -0.01 1.44 16 37 H 0.11 2.09 7.69 -2.39 -0.02 2.07 16 38 H 0.12 1.99 7.94 -2.39 -0.02 1.97 16 39 H 0.12 2.18 5.93 -2.39 -0.01 2.17 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 3.20 6.05 -2.39 -0.01 3.18 16 45 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.05 2.47 7.00 -2.39 -0.02 2.45 16 47 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.33 358.90 4.66 -63.67 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.90 Total: 16.32 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 3.97 Total: -23.45 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.19 Total: -77.12 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.04 Total: -25.64 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -68.33 4.66 -63.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911064.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.929 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds