Wall clock time and date at job start Tue Mar 31 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46703 * 2 1 4 4 C 1.53005 * 109.47231 * 64.99971 * 3 2 1 5 5 C 1.52998 * 109.46698 * 185.90479 * 4 3 2 6 6 C 1.53001 * 109.46931 * 184.99957 * 3 2 1 7 7 N 1.46901 * 109.47077 * 64.78544 * 6 3 2 8 8 C 1.46901 * 110.99343 * 72.58162 * 7 6 3 9 9 C 1.50699 * 109.47713 * 59.45703 * 8 7 6 10 10 H 1.08004 * 119.99846 * 3.33204 * 9 8 7 11 11 C 1.37872 * 119.99959 * 183.33533 * 9 8 7 12 12 N 1.31509 * 120.00071 * 5.22104 * 11 9 8 13 13 Si 1.86802 * 120.00008 * 185.22056 * 11 9 8 14 14 H 1.48503 * 109.47222 * 64.99691 * 13 11 9 15 15 H 1.48497 * 109.47393 * 185.00093 * 13 11 9 16 16 H 1.48501 * 109.46882 * 305.00184 * 13 11 9 17 17 C 1.46904 * 110.99898 * 196.52783 * 7 6 3 18 18 C 1.50697 * 109.46775 * 167.75869 * 17 7 6 19 19 C 1.35318 * 126.12372 * 95.22771 * 18 17 7 20 20 C 1.39870 * 107.91827 * 180.14228 * 19 18 17 21 21 C 1.50699 * 125.89984 * 179.85941 * 20 19 18 22 22 N 1.30834 * 108.20238 * 359.60180 * 20 19 18 23 23 N 1.34948 * 126.12730 * 274.92489 * 18 17 7 24 24 C 1.46494 * 126.03928 * 0.02562 * 23 18 17 25 25 H 1.08993 * 109.47157 * 60.00250 * 1 2 3 26 26 H 1.09005 * 109.46481 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47223 * 300.00064 * 1 2 3 28 28 H 1.08992 * 109.47560 * 239.99749 * 2 1 3 29 29 H 1.09001 * 109.47215 * 119.99426 * 2 1 3 30 30 H 1.08999 * 109.46862 * 304.99394 * 3 2 1 31 31 H 1.09002 * 109.46837 * 305.90466 * 4 3 2 32 32 H 1.08998 * 109.47070 * 65.90299 * 4 3 2 33 33 H 1.08997 * 109.47583 * 62.54426 * 5 4 3 34 34 H 1.09003 * 109.46633 * 182.53990 * 5 4 3 35 35 H 1.09003 * 109.47171 * 302.53276 * 5 4 3 36 36 H 1.09001 * 109.46707 * 304.78585 * 6 3 2 37 37 H 1.08998 * 109.46894 * 184.79146 * 6 3 2 38 38 H 1.09003 * 109.46706 * 179.45537 * 8 7 6 39 39 H 1.09002 * 109.47360 * 299.44949 * 8 7 6 40 40 H 0.97006 * 119.99914 * 180.02562 * 12 11 9 41 41 H 1.08999 * 109.46846 * 47.76185 * 17 7 6 42 42 H 1.09001 * 109.47491 * 287.76316 * 17 7 6 43 43 H 1.08003 * 126.04240 * 0.02562 * 19 18 17 44 44 H 1.09001 * 109.47368 * 264.77003 * 21 20 19 45 45 H 1.08998 * 109.47087 * 144.76731 * 21 20 19 46 46 H 1.09005 * 109.47134 * 24.76558 * 21 20 19 47 47 H 1.08995 * 109.47031 * 269.97242 * 24 23 18 48 48 H 1.09000 * 109.47233 * 29.97254 * 24 23 18 49 49 H 1.09000 * 109.47325 * 149.96817 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6351 2.1267 1.3074 5 6 2.0148 3.6075 1.2468 6 6 3.5648 1.4445 -0.1257 7 7 3.9491 0.8917 -1.4314 8 6 3.6464 1.8381 -2.5133 9 6 4.3971 3.1240 -2.2808 10 1 5.0767 3.2091 -1.4457 11 6 4.2163 4.1917 -3.1341 12 7 3.3143 4.1251 -4.0888 13 14 5.2526 5.7330 -2.9341 14 1 6.6760 5.4118 -3.2096 15 1 4.7857 6.7707 -3.8883 16 1 5.1199 6.2419 -1.5454 17 6 5.3684 0.5126 -1.4454 18 6 5.6550 -0.3154 -2.6714 19 6 6.1384 0.1437 -3.8490 20 6 6.2554 -0.9446 -4.7198 21 6 6.7518 -0.8893 -6.1416 22 7 5.8646 -2.0198 -4.0850 23 7 5.4809 -1.6483 -2.7899 24 6 4.9787 -2.5479 -1.7484 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6053 1.9815 -0.8419 31 1 0.5583 2.0331 1.4481 32 1 2.1530 1.6525 2.1410 33 1 1.4626 4.0917 0.4415 34 1 1.7676 4.0850 2.1950 35 1 3.0849 3.7010 1.0612 36 1 3.9955 0.8344 0.6682 37 1 3.9351 2.4661 -0.0403 38 1 3.9497 1.4078 -3.4678 39 1 2.5755 2.0405 -2.5300 40 1 3.1874 4.8762 -4.6894 41 1 5.5979 -0.0689 -0.5524 42 1 5.9845 1.4116 -1.4618 43 1 6.3879 1.1695 -4.0769 44 1 5.9026 -0.8090 -6.8201 45 1 7.3120 -1.7969 -6.3664 46 1 7.4000 -0.0218 -6.2666 47 1 5.8152 -2.9261 -1.1608 48 1 4.2941 -2.0039 -1.0976 49 1 4.4532 -3.3828 -2.2118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417756708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:22 Heat of formation + Delta-G solvation = 55.090453 kcal Electronic energy + Delta-G solvation = -25205.091959 eV Core-core repulsion = 21975.139267 eV Total energy + Delta-G solvation = -3229.952692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69203 -37.92000 -35.30041 -33.46494 -32.39164 -31.34576 -30.36718 -29.06358 -27.70134 -26.88997 -24.95473 -24.49778 -23.59946 -22.20989 -20.88791 -19.75949 -18.91362 -18.55535 -16.49446 -15.89001 -15.47781 -14.95849 -14.61657 -14.24572 -14.10930 -13.80653 -13.59076 -13.43498 -13.16527 -13.11396 -12.77944 -12.54846 -12.38403 -12.14067 -11.86920 -11.78954 -11.68422 -11.56958 -11.29837 -11.09777 -11.01259 -10.86212 -10.70938 -10.65126 -10.36512 -10.21581 -9.97502 -9.85800 -9.82483 -9.68887 -9.53826 -8.51996 -8.40261 -7.82997 -7.20161 -6.01304 -4.08686 2.42275 3.05236 3.27553 3.33656 3.35418 3.38496 4.40694 4.93784 4.98215 5.25642 5.28606 5.33050 5.35418 5.43153 5.46180 5.52919 5.60080 5.64695 5.71403 5.76698 5.83048 5.88887 5.94960 5.99988 6.12763 6.15032 6.22356 6.26434 6.29669 6.32580 6.39679 6.44357 6.49024 6.50731 6.59945 6.65970 6.86293 6.90678 6.95674 7.01956 7.27889 7.30916 7.56748 7.62512 7.93242 8.01243 8.24874 8.28988 8.32333 8.99543 9.56465 11.03881 Molecular weight = 293.22amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.007171 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.730922 B = 3903.489739 C = 6072.877531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C -0.079 4.079 4 C -0.115 4.115 5 C -0.152 4.152 6 C 0.064 3.936 7 N -0.536 5.536 8 C 0.186 3.814 9 C -0.545 4.545 10 H 0.054 0.946 11 C 0.070 3.930 12 N -0.886 5.886 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.117 3.883 18 C 0.118 3.882 19 C -0.254 4.254 20 C 0.065 3.935 21 C -0.067 4.067 22 N -0.315 5.315 23 N -0.370 5.370 24 C 0.107 3.893 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.034 0.966 39 H 0.035 0.965 40 H 0.262 0.738 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.147 0.853 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -8.410 6.900 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.098 4.098 4 C -0.153 4.153 5 C -0.210 4.210 6 C -0.064 4.064 7 N -0.260 5.260 8 C 0.061 3.939 9 C -0.584 4.584 10 H 0.072 0.928 11 C -0.133 4.133 12 N -0.524 5.524 13 Si 0.709 3.291 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.012 4.012 18 C -0.009 4.009 19 C -0.283 4.283 20 C -0.100 4.100 21 C -0.126 4.126 22 N -0.139 5.139 23 N -0.153 5.153 24 C -0.035 4.035 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.165 0.835 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.110 0.890 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.143 -10.091 6.711 12.120 hybrid contribution 1.042 2.637 0.251 2.846 sum 1.185 -7.454 6.962 10.268 Atomic orbital electron populations 1.21840 0.97157 1.00499 1.01464 1.21445 0.94393 0.97138 1.01684 1.21125 0.95747 0.95440 0.97486 1.21559 1.00349 0.95781 0.97587 1.21807 1.02560 0.96086 1.00520 1.22051 0.94859 0.99177 0.90345 1.62529 1.14480 1.44012 1.04943 1.19807 0.97028 0.87954 0.89144 1.21567 1.25895 0.98782 1.12129 0.92790 1.24871 0.94908 0.98131 0.95356 1.69935 1.32407 1.31720 1.18344 0.86838 0.81076 0.83342 0.77860 1.20320 1.21324 1.20347 1.20513 0.92701 0.96756 0.91263 1.20966 0.98075 0.83880 0.97995 1.21198 1.13885 1.00130 0.93135 1.22182 0.99535 0.91288 0.96996 1.20093 1.00870 1.02377 0.89211 1.77126 1.23048 1.23204 0.90528 1.48199 1.51228 1.05754 1.10111 1.21705 0.99284 0.93854 0.88611 0.92872 0.93738 0.93199 0.90882 0.93445 0.90271 0.92416 0.92984 0.92560 0.94001 0.92040 0.93694 0.92548 0.94794 0.94721 0.92858 0.92124 0.91242 0.83526 0.90932 0.91671 0.90740 0.91925 0.89006 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.68 37.16 0.36 -1.64 16 2 C -0.11 -1.58 5.35 -26.73 -0.14 -1.72 16 3 C -0.08 -1.29 1.86 -90.61 -0.17 -1.46 16 4 C -0.11 -1.62 5.28 -26.73 -0.14 -1.76 16 5 C -0.15 -2.30 9.74 37.16 0.36 -1.94 16 6 C 0.06 1.12 4.06 -3.82 -0.02 1.10 16 7 N -0.54 -10.38 4.00 -237.51 -0.95 -11.33 16 8 C 0.19 4.48 4.81 -4.98 -0.02 4.46 16 9 C -0.54 -13.89 7.28 -34.44 -0.25 -14.14 16 10 H 0.05 1.36 5.99 -52.48 -0.31 1.05 16 11 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 12 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 13 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.12 2.14 4.74 -4.97 -0.02 2.12 16 18 C 0.12 2.26 5.75 -82.26 -0.47 1.79 16 19 C -0.25 -5.09 9.57 -40.01 -0.38 -5.47 16 20 C 0.07 1.21 7.22 -82.41 -0.59 0.61 16 21 C -0.07 -0.96 10.45 36.01 0.38 -0.58 16 22 N -0.32 -6.02 12.58 33.67 0.42 -5.60 16 23 N -0.37 -6.60 4.01 -63.89 -0.26 -6.86 16 24 C 0.11 1.42 11.16 59.84 0.67 2.09 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.60 6.44 -51.93 -0.33 0.27 16 28 H 0.07 1.19 7.61 -51.93 -0.40 0.79 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.56 6.63 -51.93 -0.34 1.22 16 31 H 0.06 0.76 6.31 -51.93 -0.33 0.43 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 1.01 6.39 -51.93 -0.33 0.68 16 36 H 0.04 0.70 7.77 -51.93 -0.40 0.30 16 37 H 0.06 1.12 4.38 -51.93 -0.23 0.89 16 38 H 0.03 0.91 6.41 -51.93 -0.33 0.58 16 39 H 0.03 0.93 6.66 -51.93 -0.35 0.58 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.06 0.95 7.64 -51.93 -0.40 0.55 16 42 H 0.07 1.38 6.49 -51.93 -0.34 1.05 16 43 H 0.15 3.07 8.06 -52.48 -0.42 2.65 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.09 1.16 7.78 -51.93 -0.40 0.76 16 49 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -29.09 379.58 -8.60 -37.69 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.70 Total: 3.87 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -0.55 Total: -14.76 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.05 Total: -48.23 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.09 -8.60 -37.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417756708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.784 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds