Wall clock time and date at job start Tue Mar 31 2020 06:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46703 * 2 1 4 4 C 1.53005 * 109.47231 * 64.99971 * 3 2 1 5 5 C 1.52998 * 109.46698 * 185.90479 * 4 3 2 6 6 C 1.53001 * 109.46931 * 184.99957 * 3 2 1 7 7 N 1.46901 * 109.47077 * 64.78544 * 6 3 2 8 8 C 1.46901 * 110.99343 * 72.58162 * 7 6 3 9 9 C 1.50699 * 109.47713 * 59.45703 * 8 7 6 10 10 H 1.08004 * 119.99846 * 3.33204 * 9 8 7 11 11 C 1.37872 * 119.99959 * 183.33533 * 9 8 7 12 12 N 1.31509 * 120.00071 * 5.22104 * 11 9 8 13 13 Si 1.86802 * 120.00008 * 185.22056 * 11 9 8 14 14 H 1.48503 * 109.47222 * 64.99691 * 13 11 9 15 15 H 1.48497 * 109.47393 * 185.00093 * 13 11 9 16 16 H 1.48501 * 109.46882 * 305.00184 * 13 11 9 17 17 C 1.46904 * 110.99898 * 196.52783 * 7 6 3 18 18 C 1.50697 * 109.46775 * 167.75869 * 17 7 6 19 19 C 1.35318 * 126.12372 * 95.22771 * 18 17 7 20 20 C 1.39870 * 107.91827 * 180.14228 * 19 18 17 21 21 C 1.50699 * 125.89984 * 179.85941 * 20 19 18 22 22 N 1.30834 * 108.20238 * 359.60180 * 20 19 18 23 23 N 1.34948 * 126.12730 * 274.92489 * 18 17 7 24 24 C 1.46494 * 126.03928 * 0.02562 * 23 18 17 25 25 H 1.08993 * 109.47157 * 60.00250 * 1 2 3 26 26 H 1.09005 * 109.46481 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47223 * 300.00064 * 1 2 3 28 28 H 1.08992 * 109.47560 * 239.99749 * 2 1 3 29 29 H 1.09001 * 109.47215 * 119.99426 * 2 1 3 30 30 H 1.08999 * 109.46862 * 304.99394 * 3 2 1 31 31 H 1.09002 * 109.46837 * 305.90466 * 4 3 2 32 32 H 1.08998 * 109.47070 * 65.90299 * 4 3 2 33 33 H 1.08997 * 109.47583 * 62.54426 * 5 4 3 34 34 H 1.09003 * 109.46633 * 182.53990 * 5 4 3 35 35 H 1.09003 * 109.47171 * 302.53276 * 5 4 3 36 36 H 1.09001 * 109.46707 * 304.78585 * 6 3 2 37 37 H 1.08998 * 109.46894 * 184.79146 * 6 3 2 38 38 H 1.09003 * 109.46706 * 179.45537 * 8 7 6 39 39 H 1.09002 * 109.47360 * 299.44949 * 8 7 6 40 40 H 0.97006 * 119.99914 * 180.02562 * 12 11 9 41 41 H 1.08999 * 109.46846 * 47.76185 * 17 7 6 42 42 H 1.09001 * 109.47491 * 287.76316 * 17 7 6 43 43 H 1.08003 * 126.04240 * 0.02562 * 19 18 17 44 44 H 1.09001 * 109.47368 * 264.77003 * 21 20 19 45 45 H 1.08998 * 109.47087 * 144.76731 * 21 20 19 46 46 H 1.09005 * 109.47134 * 24.76558 * 21 20 19 47 47 H 1.08995 * 109.47031 * 269.97242 * 24 23 18 48 48 H 1.09000 * 109.47233 * 29.97254 * 24 23 18 49 49 H 1.09000 * 109.47325 * 149.96817 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6351 2.1267 1.3074 5 6 2.0148 3.6075 1.2468 6 6 3.5648 1.4445 -0.1257 7 7 3.9491 0.8917 -1.4314 8 6 3.6464 1.8381 -2.5133 9 6 4.3971 3.1240 -2.2808 10 1 5.0767 3.2091 -1.4457 11 6 4.2163 4.1917 -3.1341 12 7 3.3143 4.1251 -4.0888 13 14 5.2526 5.7330 -2.9341 14 1 6.6760 5.4118 -3.2096 15 1 4.7857 6.7707 -3.8883 16 1 5.1199 6.2419 -1.5454 17 6 5.3684 0.5126 -1.4454 18 6 5.6550 -0.3154 -2.6714 19 6 6.1384 0.1437 -3.8490 20 6 6.2554 -0.9446 -4.7198 21 6 6.7518 -0.8893 -6.1416 22 7 5.8646 -2.0198 -4.0850 23 7 5.4809 -1.6483 -2.7899 24 6 4.9787 -2.5479 -1.7484 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6053 1.9815 -0.8419 31 1 0.5583 2.0331 1.4481 32 1 2.1530 1.6525 2.1410 33 1 1.4626 4.0917 0.4415 34 1 1.7676 4.0850 2.1950 35 1 3.0849 3.7010 1.0612 36 1 3.9955 0.8344 0.6682 37 1 3.9351 2.4661 -0.0403 38 1 3.9497 1.4078 -3.4678 39 1 2.5755 2.0405 -2.5300 40 1 3.1874 4.8762 -4.6894 41 1 5.5979 -0.0689 -0.5524 42 1 5.9845 1.4116 -1.4618 43 1 6.3879 1.1695 -4.0769 44 1 5.9026 -0.8090 -6.8201 45 1 7.3120 -1.7969 -6.3664 46 1 7.4000 -0.0218 -6.2666 47 1 5.8152 -2.9261 -1.1608 48 1 4.2941 -2.0039 -1.0976 49 1 4.4532 -3.3828 -2.2118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417756708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:21 Heat of formation + Delta-G solvation = 38.913345 kcal Electronic energy + Delta-G solvation = -25205.793451 eV Core-core repulsion = 21975.139267 eV Total energy + Delta-G solvation = -3230.654184 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 293.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12521 -39.39257 -36.74828 -34.87502 -34.32012 -32.49952 -31.80731 -30.27266 -29.39502 -28.46745 -26.33608 -25.96599 -25.22620 -23.37818 -22.45816 -21.21580 -20.32787 -19.97029 -18.44468 -17.37547 -16.93192 -16.68102 -16.04747 -15.79628 -15.51947 -15.13959 -14.86834 -14.76715 -14.45825 -14.36071 -14.27351 -14.08908 -13.83188 -13.41156 -13.18381 -13.06908 -12.98085 -12.88132 -12.83307 -12.68613 -12.51895 -12.35555 -12.28872 -12.11871 -11.97692 -11.83406 -11.62620 -11.42405 -11.16570 -11.12650 -10.97199 -10.50754 -9.92150 -9.30575 -8.92475 -8.07427 -6.23366 0.96970 1.37870 1.39407 1.45782 1.76571 1.89764 2.40774 3.18567 3.43532 3.72044 3.88378 4.00277 4.12572 4.14801 4.31486 4.41837 4.48084 4.49871 4.54526 4.61048 4.66135 4.70297 4.72528 4.77668 4.82214 4.85183 4.97556 5.01980 5.04714 5.07662 5.09916 5.11722 5.16211 5.28807 5.32630 5.39111 5.40169 5.43102 5.46752 5.62626 5.70240 5.72553 5.86362 5.87860 6.11421 6.23946 6.31108 6.58580 6.87247 6.96048 7.45708 8.94843 Molecular weight = 293.22amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.007171 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.730922 B = 3903.489739 C = 6072.877531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.076 4.076 4 C -0.107 4.107 5 C -0.151 4.151 6 C 0.065 3.935 7 N -0.528 5.528 8 C 0.211 3.789 9 C -0.538 4.538 10 H 0.058 0.942 11 C 0.018 3.982 12 N -0.924 5.924 13 Si 0.941 3.059 14 H -0.272 1.272 15 H -0.289 1.289 16 H -0.270 1.270 17 C 0.122 3.878 18 C 0.113 3.887 19 C -0.285 4.285 20 C 0.058 3.942 21 C -0.065 4.065 22 N -0.331 5.331 23 N -0.369 5.369 24 C 0.098 3.902 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.260 0.740 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.126 0.874 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -9.708 9.377 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.095 4.095 4 C -0.145 4.145 5 C -0.209 4.209 6 C -0.063 4.063 7 N -0.251 5.251 8 C 0.084 3.916 9 C -0.577 4.577 10 H 0.076 0.924 11 C -0.181 4.181 12 N -0.564 5.564 13 Si 0.767 3.233 14 H -0.197 1.197 15 H -0.214 1.214 16 H -0.195 1.195 17 C -0.007 4.007 18 C -0.016 4.016 19 C -0.315 4.315 20 C -0.107 4.107 21 C -0.124 4.124 22 N -0.155 5.155 23 N -0.151 5.151 24 C -0.042 4.042 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.144 0.856 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.117 0.883 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.676 -11.415 9.215 14.686 hybrid contribution 0.857 2.985 -0.477 3.142 sum 1.533 -8.430 8.738 12.238 Atomic orbital electron populations 1.21809 0.96126 1.01545 1.01172 1.21364 0.95306 0.95469 1.01814 1.21063 0.94632 0.96617 0.97183 1.21520 1.01491 0.94687 0.96799 1.21788 1.01024 0.97184 1.00868 1.22133 0.95930 0.98347 0.89881 1.62429 1.15555 1.42362 1.04742 1.19276 0.94543 0.88304 0.89447 1.21802 1.25176 0.99136 1.11620 0.92400 1.25632 0.95968 1.01261 0.95251 1.70074 1.34214 1.32605 1.19504 0.85863 0.79603 0.79802 0.77989 1.19691 1.21429 1.19456 1.20527 0.91205 0.96421 0.92566 1.21041 0.97849 0.84801 0.97950 1.21237 1.15813 0.99782 0.94651 1.22711 0.99071 0.90493 0.98433 1.20212 1.01349 1.03897 0.86945 1.77073 1.23617 1.23515 0.91289 1.48542 1.50365 1.05736 1.10453 1.22072 1.00628 0.93566 0.87951 0.94977 0.92020 0.91698 0.93034 0.90827 0.94864 0.91046 0.90481 0.95071 0.91488 0.93714 0.90306 0.94907 0.98135 0.98131 0.93075 0.88374 0.93154 0.85648 0.90522 0.89694 0.89704 0.89145 0.88264 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.68 71.98 0.70 -2.96 16 2 C -0.10 -2.77 5.35 30.60 0.16 -2.60 16 3 C -0.08 -2.43 1.86 -10.79 -0.02 -2.45 16 4 C -0.11 -2.79 5.28 30.60 0.16 -2.63 16 5 C -0.15 -4.45 9.74 71.98 0.70 -3.75 16 6 C 0.06 2.21 4.06 86.30 0.35 2.56 16 7 N -0.53 -20.56 4.00 -905.34 -3.62 -24.18 16 8 C 0.21 10.67 4.81 85.56 0.41 11.08 16 9 C -0.54 -28.39 7.28 25.60 0.19 -28.21 16 10 H 0.06 2.97 5.99 -2.91 -0.02 2.95 16 11 C 0.02 1.01 5.45 84.65 0.46 1.47 16 12 N -0.92 -54.80 13.29 21.44 0.29 -54.51 16 13 Si 0.94 43.42 29.54 68.60 2.03 45.45 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 C 0.12 4.38 4.74 85.56 0.41 4.78 16 18 C 0.11 4.30 5.75 41.40 0.24 4.54 16 19 C -0.28 -11.80 9.57 21.99 0.21 -11.59 16 20 C 0.06 2.16 7.22 43.10 0.31 2.47 16 21 C -0.07 -1.86 10.45 71.24 0.74 -1.11 16 22 N -0.33 -12.44 12.58 -47.39 -0.60 -13.04 16 23 N -0.37 -12.75 4.01 -356.05 -1.43 -14.18 16 24 C 0.10 2.33 11.16 127.77 1.43 3.76 16 25 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.06 1.39 6.44 -2.39 -0.02 1.38 16 28 H 0.05 1.62 7.61 -2.39 -0.02 1.60 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.37 6.63 -2.39 -0.02 1.35 16 31 H 0.07 1.69 6.31 -2.39 -0.02 1.67 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.45 6.39 -2.39 -0.02 1.43 16 36 H 0.08 2.18 7.77 -2.39 -0.02 2.16 16 37 H 0.03 1.29 4.38 -2.39 -0.01 1.28 16 38 H 0.00 0.03 6.41 -2.39 -0.02 0.02 16 39 H 0.00 0.03 6.66 -2.39 -0.02 0.02 16 40 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 41 H 0.10 2.77 7.64 -2.39 -0.02 2.75 16 42 H 0.05 2.01 6.49 -2.39 -0.02 2.00 16 43 H 0.13 5.61 8.06 -2.91 -0.02 5.58 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.10 2.22 7.78 -2.39 -0.02 2.20 16 49 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.15 379.58 4.02 -62.13 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.90 Total: 22.98 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 6.45 Total: -24.64 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.36 Total: -105.92 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.15 4.02 -62.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417756708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.044 kcal (2) G-P(sol) polarization free energy of solvation -66.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds