Wall clock time and date at job start Tue Mar 31 2020 07:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47580 * 2 1 4 4 H 1.08996 * 109.47238 * 305.64122 * 3 2 1 5 5 C 1.50695 * 109.47507 * 185.64087 * 3 2 1 6 6 H 1.08000 * 120.00089 * 239.99772 * 5 3 2 7 7 C 1.37879 * 120.00171 * 60.00016 * 5 3 2 8 8 N 1.31510 * 119.99688 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00016 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47373 * 59.99997 * 9 7 5 11 11 H 1.48501 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46894 * 299.99767 * 9 7 5 13 13 N 1.46903 * 109.47025 * 65.63661 * 3 2 1 14 14 C 1.46900 * 111.00352 * 203.31773 * 13 3 2 15 15 C 1.52999 * 109.47364 * 205.73577 * 14 13 3 16 16 C 1.52998 * 109.46999 * 300.00324 * 15 14 13 17 17 C 1.53003 * 109.46547 * 299.99571 * 16 15 14 18 18 C 1.53003 * 109.46628 * 180.02562 * 17 16 15 19 19 C 1.53007 * 109.46865 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.46865 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47504 * 59.99337 * 20 19 18 22 22 C 1.52998 * 109.47207 * 300.00272 * 21 20 19 23 23 C 1.52996 * 109.47504 * 59.99805 * 18 17 16 24 24 C 1.52999 * 109.47121 * 60.00504 * 17 16 15 25 25 C 1.52995 * 109.47157 * 299.99568 * 24 17 16 26 26 H 1.09001 * 109.47397 * 174.14059 * 1 2 3 27 27 H 1.08998 * 109.47000 * 294.14089 * 1 2 3 28 28 H 1.09004 * 109.47198 * 54.13737 * 1 2 3 29 29 H 1.09000 * 109.46990 * 239.99753 * 2 1 3 30 30 H 1.09004 * 109.47066 * 120.00589 * 2 1 3 31 31 H 0.97006 * 120.00117 * 180.02562 * 8 7 5 32 32 H 1.00896 * 110.99772 * 327.27667 * 13 3 2 33 33 H 1.09003 * 109.47081 * 325.73714 * 14 13 3 34 34 H 1.09001 * 109.47260 * 179.97438 * 15 14 13 35 35 H 1.09007 * 109.47051 * 60.00258 * 15 14 13 36 36 H 1.08991 * 109.47673 * 59.99564 * 16 15 14 37 37 H 1.09003 * 109.46682 * 180.02562 * 16 15 14 38 38 H 1.09000 * 109.47176 * 299.99739 * 17 16 15 39 39 H 1.09001 * 109.47167 * 299.99805 * 18 17 16 40 40 H 1.09001 * 109.46687 * 299.99631 * 19 18 17 41 41 H 1.08995 * 109.47211 * 59.99489 * 19 18 17 42 42 H 1.09001 * 109.47167 * 299.99337 * 20 19 18 43 43 H 1.08999 * 109.46658 * 179.97438 * 20 19 18 44 44 H 1.08992 * 109.47194 * 179.97438 * 21 20 19 45 45 H 1.09001 * 109.46908 * 59.99842 * 21 20 19 46 46 H 1.09000 * 109.47357 * 299.99623 * 22 21 20 47 47 H 1.09000 * 109.47227 * 179.97438 * 22 21 20 48 48 H 1.08998 * 109.47159 * 300.00258 * 23 18 17 49 49 H 1.09000 * 109.46654 * 60.00326 * 23 18 17 50 50 H 1.09001 * 109.47260 * 59.99836 * 24 17 16 51 51 H 1.08998 * 109.46942 * 179.97438 * 24 17 16 52 52 H 1.08995 * 109.47411 * 179.97438 * 25 24 17 53 53 H 1.09001 * 109.47255 * 300.00272 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5967 1.9846 -0.8351 5 6 3.5405 1.4447 -0.1396 6 1 4.1540 1.8864 0.6317 7 6 4.1303 0.8829 -1.2522 8 7 3.3833 0.3447 -2.1912 9 14 5.9903 0.8851 -1.4249 10 1 6.5940 0.1461 -0.2872 11 1 6.3696 0.2266 -2.7007 12 1 6.4857 2.2850 -1.4246 13 7 1.6647 2.0945 1.2617 14 6 1.6231 3.5548 1.1076 15 6 1.8711 4.2181 2.4638 16 6 0.7890 3.7785 3.4520 17 6 -0.5846 4.1967 2.9234 18 6 -1.6667 3.7576 3.9120 19 6 -3.0403 4.1752 3.3830 20 6 -4.1225 3.7356 4.3713 21 6 -3.8748 4.3991 5.7275 22 6 -2.5012 3.9815 6.2562 23 6 -1.4184 4.4212 5.2680 24 6 -0.8326 3.5334 1.5672 25 6 0.2495 3.9729 0.5789 26 1 -0.3634 -1.0223 -0.1049 27 1 -0.3633 0.4203 0.9378 28 1 -0.3634 0.6021 -0.8329 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.7981 -0.0509 -2.9738 32 1 0.7831 1.7416 1.6028 33 1 2.3940 3.8680 0.4035 34 1 1.8407 5.3017 2.3493 35 1 2.8498 3.9203 2.8404 36 1 0.8198 2.6951 3.5664 37 1 0.9655 4.2515 4.4181 38 1 -0.6154 5.2802 2.8091 39 1 -1.6360 2.6741 4.0267 40 1 -3.0713 5.2587 3.2680 41 1 -3.2170 3.7021 2.4171 42 1 -4.0914 2.6520 4.4859 43 1 -5.1010 4.0335 3.9947 44 1 -4.6459 4.0862 6.4313 45 1 -3.9059 5.4826 5.6129 46 1 -2.4700 2.8980 6.3709 47 1 -2.3245 4.4545 7.2222 48 1 -0.4398 4.1234 5.6445 49 1 -1.4492 5.5047 5.1532 50 1 -0.8018 2.4498 1.6815 51 1 -1.8113 3.8309 1.1908 52 1 0.0731 3.5000 -0.3871 53 1 0.2187 5.0565 0.4646 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663446220.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:11 Heat of formation + Delta-G solvation = -55.742665 kcal Electronic energy + Delta-G solvation = -25552.826560 eV Core-core repulsion = 22421.608126 eV Total energy + Delta-G solvation = -3131.218433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 293.241 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.78530 -37.84171 -35.26118 -32.79327 -31.60203 -31.18143 -30.02624 -29.74811 -27.40654 -25.94417 -23.25029 -23.05972 -22.65494 -21.42701 -20.45720 -19.80231 -19.54378 -18.35274 -16.13531 -15.89967 -15.29077 -14.78949 -14.39083 -14.26351 -14.18145 -14.01730 -13.76485 -13.23239 -13.02671 -12.90623 -12.64236 -12.58367 -12.40683 -11.88825 -11.72042 -11.66296 -11.49959 -11.41442 -11.14692 -11.09047 -10.93200 -10.83638 -10.66466 -10.61757 -10.50976 -10.30802 -10.18348 -10.11729 -9.83862 -9.65156 -9.61089 -9.45054 -9.25426 -8.95105 -8.29334 -7.05994 -5.91030 -3.94726 3.37042 3.41003 3.44666 4.49333 4.56126 4.62367 4.68333 4.97756 5.06113 5.17183 5.23767 5.28333 5.35889 5.42918 5.44761 5.46204 5.56353 5.58195 5.61078 5.72289 5.79815 5.87013 5.91769 5.94522 5.97176 6.00611 6.06003 6.09721 6.12052 6.17551 6.20103 6.21838 6.25105 6.27796 6.38616 6.43174 6.48015 6.51279 6.55931 6.69355 6.83753 6.88188 6.90253 6.93631 7.17932 7.28203 7.62034 7.85404 7.99477 8.44015 8.49109 8.90151 9.13867 9.70118 11.14085 Molecular weight = 293.24amu Principal moments of inertia in cm(-1) A = 0.026966 B = 0.003590 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.097487 B = 7797.480698 C = 8240.481534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.679 5.679 14 C 0.094 3.906 15 C -0.104 4.104 16 C -0.110 4.110 17 C -0.078 4.078 18 C -0.081 4.081 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.148 4.148 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.259 0.741 32 H 0.318 0.682 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.056 0.944 52 H 0.059 0.941 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 8.028 12.566 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.017 4.017 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.097 4.097 18 C -0.099 4.099 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.187 4.187 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.078 0.922 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.615 7.913 12.631 19.527 hybrid contribution 0.141 0.061 -0.788 0.803 sum -12.474 7.974 11.843 18.960 Atomic orbital electron populations 1.21888 0.99740 0.99538 0.99427 1.21752 0.91102 1.00631 1.02881 1.19127 0.95129 0.89787 0.84772 0.98208 1.21207 0.91485 1.36241 1.04029 0.92216 1.24954 0.97904 0.95789 0.95938 1.69866 1.34640 1.39644 1.09601 0.86638 0.86060 0.78073 0.77046 1.20376 1.21561 1.20501 1.60814 1.35020 1.02320 1.33020 1.21396 0.94710 0.90058 0.95571 1.21511 0.98777 0.98115 0.95802 1.21559 0.93658 1.01820 0.97754 1.21170 0.94549 0.99628 0.94304 1.21188 0.94125 1.00252 0.94362 1.21642 0.94344 1.00871 0.98468 1.21540 0.98396 1.00466 0.95332 1.21525 0.96995 1.00338 0.96746 1.21550 0.94861 1.01078 0.98250 1.21641 0.98501 1.00166 0.94934 1.21613 0.98122 1.00527 0.94826 1.22191 0.97208 1.00493 0.98800 0.94555 0.94705 0.93957 0.88403 0.94228 0.93152 0.86246 0.90354 0.93326 0.91712 0.91266 0.92860 0.91925 0.91301 0.92335 0.91700 0.92107 0.92470 0.92555 0.92294 0.92104 0.92458 0.91550 0.92348 0.91922 0.92556 0.92222 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.63 37.16 0.36 -2.54 16 2 C -0.13 -2.96 5.37 -26.73 -0.14 -3.11 16 3 C 0.22 5.40 1.85 -68.87 -0.13 5.27 16 4 H 0.00 0.01 7.17 -51.93 -0.37 -0.36 16 5 C -0.49 -13.53 8.41 -34.44 -0.29 -13.82 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.65 11.29 55.43 0.63 -25.03 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -14.04 5.54 -100.96 -0.56 -14.60 16 14 C 0.09 1.73 2.66 -67.71 -0.18 1.55 16 15 C -0.10 -1.63 5.64 -26.73 -0.15 -1.78 16 16 C -0.11 -1.50 4.61 -26.73 -0.12 -1.62 16 17 C -0.08 -0.95 1.77 -90.62 -0.16 -1.11 16 18 C -0.08 -0.86 1.77 -90.62 -0.16 -1.02 16 19 C -0.12 -1.14 4.85 -26.73 -0.13 -1.27 16 20 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 21 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 22 C -0.12 -1.05 5.92 -26.70 -0.16 -1.21 16 23 C -0.12 -1.12 4.86 -26.71 -0.13 -1.25 16 24 C -0.11 -1.56 4.60 -26.73 -0.12 -1.68 16 25 C -0.15 -2.38 5.51 -26.73 -0.15 -2.53 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.03 0.61 6.06 -51.93 -0.31 0.30 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.32 6.07 3.55 -39.29 -0.14 5.93 16 33 H 0.08 1.67 7.56 -51.93 -0.39 1.28 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.07 1.04 7.23 -51.93 -0.38 0.67 16 37 H 0.05 0.65 6.43 -51.93 -0.33 0.32 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.94 5.64 -51.93 -0.29 0.64 16 51 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 52 H 0.06 1.08 7.46 -51.93 -0.39 0.69 16 53 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -27.25 375.01 -11.61 -38.86 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -10.23 Total: 5.54 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -2.08 Total: -27.07 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.07 Total: -39.63 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.25 -11.61 -38.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446220.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.884 kcal (2) G-P(sol) polarization free energy of solvation -27.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds