Wall clock time and date at job start Tue Mar 31 2020 07:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47729 * 2 1 4 4 H 1.09000 * 109.46670 * 54.65201 * 3 2 1 5 5 C 1.50692 * 109.47585 * 174.65409 * 3 2 1 6 6 H 1.08008 * 119.99867 * 119.99724 * 5 3 2 7 7 C 1.37873 * 120.00218 * 300.00066 * 5 3 2 8 8 N 1.31512 * 119.99752 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00139 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47067 * 90.00130 * 9 7 5 11 11 H 1.48500 * 109.47107 * 209.99795 * 9 7 5 12 12 H 1.48502 * 109.47244 * 329.99868 * 9 7 5 13 13 N 1.46900 * 109.46915 * 294.65885 * 3 2 1 14 14 C 1.46896 * 111.00295 * 154.39627 * 13 3 2 15 15 C 1.53004 * 109.46865 * 272.01185 * 14 13 3 16 16 C 1.53002 * 109.47192 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47190 * 60.00020 * 16 15 14 18 18 C 1.52994 * 109.46989 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46976 * 299.99724 * 18 17 16 20 20 C 1.53009 * 109.46914 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47283 * 60.00134 * 20 19 18 22 22 C 1.53004 * 109.46688 * 299.99644 * 21 20 19 23 23 C 1.53001 * 109.47278 * 60.00498 * 22 21 20 24 24 C 1.53004 * 109.46688 * 299.99928 * 17 16 15 25 25 C 1.53000 * 109.47258 * 152.01364 * 14 13 3 26 26 H 1.09005 * 109.47248 * 300.68531 * 1 2 3 27 27 H 1.09003 * 109.46991 * 60.67855 * 1 2 3 28 28 H 1.08994 * 109.47546 * 180.67735 * 1 2 3 29 29 H 1.08998 * 109.47217 * 239.99772 * 2 1 3 30 30 H 1.09000 * 109.46661 * 119.99744 * 2 1 3 31 31 H 0.97001 * 119.99964 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00359 * 30.43444 * 13 3 2 33 33 H 1.08996 * 109.47406 * 32.00965 * 14 13 3 34 34 H 1.09003 * 109.46772 * 299.99727 * 15 14 13 35 35 H 1.09003 * 109.47522 * 59.99771 * 15 14 13 36 36 H 1.09004 * 109.46521 * 299.99835 * 16 15 14 37 37 H 1.08994 * 109.47124 * 180.02562 * 16 15 14 38 38 H 1.08996 * 109.47237 * 59.99857 * 17 16 15 39 39 H 1.08996 * 109.47565 * 59.99669 * 18 17 16 40 40 H 1.09003 * 109.46772 * 299.99989 * 19 18 17 41 41 H 1.08997 * 109.46866 * 60.00247 * 19 18 17 42 42 H 1.09004 * 109.46707 * 299.99779 * 20 19 18 43 43 H 1.08999 * 109.46391 * 179.97438 * 20 19 18 44 44 H 1.08991 * 109.46816 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.47237 * 59.99572 * 21 20 19 46 46 H 1.08996 * 109.47223 * 299.99937 * 22 21 20 47 47 H 1.08998 * 109.46989 * 179.97438 * 22 21 20 48 48 H 1.08994 * 109.47156 * 179.97438 * 23 22 21 49 49 H 1.08996 * 109.47029 * 59.99249 * 23 22 21 50 50 H 1.08996 * 109.47223 * 299.99937 * 24 17 16 51 51 H 1.09002 * 109.46704 * 180.02562 * 24 17 16 52 52 H 1.08994 * 109.47072 * 299.99655 * 25 14 13 53 53 H 1.08996 * 109.47179 * 60.00052 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6007 1.9831 0.8382 5 6 3.5412 1.4444 0.1324 6 1 4.1509 1.8874 -0.6413 7 6 4.1363 0.8808 1.2410 8 7 3.3938 0.3418 2.1832 9 14 5.9971 0.8827 1.4047 10 1 6.4309 2.1169 2.1072 11 1 6.4267 -0.3068 2.1830 12 1 6.6129 0.8393 0.0541 13 7 1.6586 2.0967 -1.2587 14 6 1.5650 3.5527 -1.0880 15 6 0.1539 3.9223 -0.6263 16 6 0.0561 5.4389 -0.4490 17 6 0.3535 6.1284 -1.7821 18 6 0.2564 7.6449 -1.6046 19 6 -1.1545 8.0150 -1.1427 20 6 -1.2518 9.5317 -0.9658 21 6 -0.9546 10.2208 -2.2992 22 6 0.4563 9.8507 -2.7611 23 6 0.5536 8.3340 -2.9380 24 6 1.7646 5.7587 -2.2437 25 6 1.8626 4.2427 -2.4207 26 1 -0.3634 0.5245 0.8838 27 1 -0.3633 0.5033 -0.8960 28 1 -0.3634 -1.0275 0.0121 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.8125 -0.0551 2.9630 32 1 0.7940 1.7181 -1.6155 33 1 2.2887 3.8782 -0.3407 34 1 -0.5698 3.5969 -1.3736 35 1 -0.0583 3.4308 0.3232 36 1 0.7799 5.7647 0.2981 37 1 -0.9490 5.7022 -0.1197 38 1 -0.3702 5.8025 -2.5291 39 1 0.9803 7.9705 -0.8577 40 1 -1.8785 7.6894 -1.8897 41 1 -1.3664 7.5238 -0.1930 42 1 -0.5278 9.8576 -0.2190 43 1 -2.2571 9.7953 -0.6372 44 1 -1.0235 11.3011 -2.1730 45 1 -1.6786 9.8948 -3.0459 46 1 1.1803 10.1766 -2.0143 47 1 0.6679 10.3412 -3.7112 48 1 1.5586 8.0705 -3.2675 49 1 -0.1704 8.0082 -3.6847 50 1 2.4883 6.0846 -1.4967 51 1 1.9767 6.2503 -3.1932 52 1 2.8678 3.9794 -2.7496 53 1 1.1389 3.9172 -3.1679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663446221.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:14 Heat of formation + Delta-G solvation = -59.931256 kcal Electronic energy + Delta-G solvation = -25030.063307 eV Core-core repulsion = 21898.663243 eV Total energy + Delta-G solvation = -3131.400064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 293.241 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.68950 -37.71286 -35.56142 -32.88972 -31.60155 -31.23414 -30.07816 -29.99102 -27.34285 -25.72995 -23.28527 -23.05472 -22.24879 -21.48998 -20.37654 -19.87223 -19.60721 -19.07253 -16.14725 -15.86469 -15.23039 -14.81977 -14.44692 -14.28441 -14.16349 -13.86191 -13.77392 -13.15459 -13.11658 -12.95526 -12.84178 -12.49642 -12.44266 -11.98231 -11.90818 -11.68299 -11.45478 -11.33967 -11.19409 -11.13144 -10.84850 -10.75106 -10.72477 -10.61959 -10.52510 -10.38222 -10.34483 -10.00468 -9.91935 -9.80550 -9.65170 -9.55050 -9.28163 -8.95956 -8.30493 -7.08674 -5.91813 -3.95439 3.34806 3.41349 3.46298 4.48590 4.52349 4.58284 4.64535 4.92014 5.02113 5.10171 5.20139 5.22251 5.35612 5.38981 5.41318 5.42400 5.50968 5.54441 5.65829 5.66764 5.74875 5.81896 5.88219 5.91037 5.97146 5.99876 6.02825 6.06410 6.09110 6.14316 6.19953 6.20233 6.21177 6.27229 6.36316 6.42158 6.45301 6.47960 6.52664 6.60363 6.67163 6.88891 6.89967 6.94976 7.15904 7.25655 7.59913 7.84117 7.98731 8.41739 8.47830 8.86435 9.13220 9.69452 11.13410 Molecular weight = 293.24amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.003406 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.343373 B = 8219.556281 C = 8803.882837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.096 3.904 15 C -0.145 4.145 16 C -0.109 4.109 17 C -0.079 4.079 18 C -0.081 4.081 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.103 4.103 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.258 0.742 32 H 0.315 0.685 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.058 0.942 52 H 0.065 0.935 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 15.919 -7.900 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.314 5.314 14 C -0.015 4.015 15 C -0.184 4.184 16 C -0.147 4.147 17 C -0.097 4.097 18 C -0.100 4.100 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.151 4.151 25 C -0.142 4.142 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.083 0.917 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.817 15.814 -7.962 19.779 hybrid contribution 0.104 -0.013 0.756 0.763 sum -8.713 15.801 -7.206 19.430 Atomic orbital electron populations 1.21874 0.99685 0.99455 0.99606 1.21770 0.91163 1.00616 1.02937 1.19131 0.95187 0.89782 0.84631 0.98087 1.21239 0.91409 1.36052 1.04170 0.92160 1.24955 0.97973 0.95770 0.95917 1.69875 1.34602 1.39662 1.09622 0.86579 0.86024 0.77279 0.78000 1.20946 1.21432 1.19931 1.60770 1.35899 1.01948 1.32744 1.21446 0.94292 0.89549 0.96183 1.22283 0.99345 0.95649 1.01131 1.21561 1.00838 0.95401 0.96912 1.21174 0.97554 0.93467 0.97502 1.21193 0.96807 0.94874 0.97091 1.21646 0.97045 0.95231 1.01428 1.21543 1.01062 0.95839 0.97296 1.21530 0.97178 0.99515 0.97413 1.21542 0.96916 0.96474 1.00813 1.21640 1.01781 0.94456 0.97433 1.21628 0.96189 0.96675 1.00653 1.21486 1.01705 0.93206 0.97758 0.93973 0.94614 0.94534 0.94181 0.88372 0.93193 0.86698 0.90390 0.92879 0.92299 0.92152 0.92568 0.91687 0.91354 0.92257 0.91659 0.92146 0.92423 0.92532 0.92231 0.92149 0.92412 0.91593 0.92244 0.92189 0.92343 0.91666 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.74 37.15 0.36 -2.55 16 2 C -0.13 -3.00 5.36 -26.73 -0.14 -3.15 16 3 C 0.22 5.46 1.84 -68.87 -0.13 5.33 16 4 H 0.00 0.04 7.34 -51.93 -0.38 -0.34 16 5 C -0.49 -13.59 8.54 -34.45 -0.29 -13.88 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.70 11.29 55.43 0.63 -25.07 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -14.46 6.06 -100.96 -0.61 -15.07 16 14 C 0.10 1.78 2.26 -67.71 -0.15 1.62 16 15 C -0.14 -2.32 5.16 -26.73 -0.14 -2.46 16 16 C -0.11 -1.46 4.85 -26.73 -0.13 -1.59 16 17 C -0.08 -0.93 1.78 -90.62 -0.16 -1.09 16 18 C -0.08 -0.83 1.78 -90.62 -0.16 -1.00 16 19 C -0.12 -1.11 4.85 -26.72 -0.13 -1.24 16 20 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 22 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 23 C -0.12 -1.09 4.85 -26.73 -0.13 -1.22 16 24 C -0.11 -1.48 4.85 -26.75 -0.13 -1.61 16 25 C -0.10 -1.63 5.53 -26.76 -0.15 -1.78 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.03 0.63 6.47 -51.93 -0.34 0.29 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.32 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.32 6.18 6.19 -39.29 -0.24 5.94 16 33 H 0.08 1.68 7.63 -51.93 -0.40 1.28 16 34 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.06 1.05 7.66 -51.93 -0.40 0.65 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 52 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 53 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -27.51 382.25 -11.85 -39.36 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -10.55 Total: 5.02 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -2.05 Total: -26.67 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.01 Total: -40.14 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.51 -11.85 -39.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446221.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.575 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds