Wall clock time and date at job start Tue Mar 31 2020 07:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47729 * 2 1 4 4 H 1.09000 * 109.46670 * 54.65201 * 3 2 1 5 5 C 1.50692 * 109.47585 * 174.65409 * 3 2 1 6 6 H 1.08008 * 119.99867 * 119.99724 * 5 3 2 7 7 C 1.37873 * 120.00218 * 300.00066 * 5 3 2 8 8 N 1.31512 * 119.99752 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00139 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47067 * 90.00130 * 9 7 5 11 11 H 1.48500 * 109.47107 * 209.99795 * 9 7 5 12 12 H 1.48502 * 109.47244 * 329.99868 * 9 7 5 13 13 N 1.46900 * 109.46915 * 294.65885 * 3 2 1 14 14 C 1.46896 * 111.00295 * 154.39627 * 13 3 2 15 15 C 1.53004 * 109.46865 * 272.01185 * 14 13 3 16 16 C 1.53002 * 109.47192 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47190 * 60.00020 * 16 15 14 18 18 C 1.52994 * 109.46989 * 180.02562 * 17 16 15 19 19 C 1.53004 * 109.46976 * 299.99724 * 18 17 16 20 20 C 1.53009 * 109.46914 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47283 * 60.00134 * 20 19 18 22 22 C 1.53004 * 109.46688 * 299.99644 * 21 20 19 23 23 C 1.53001 * 109.47278 * 60.00498 * 22 21 20 24 24 C 1.53004 * 109.46688 * 299.99928 * 17 16 15 25 25 C 1.53000 * 109.47258 * 152.01364 * 14 13 3 26 26 H 1.09005 * 109.47248 * 300.68531 * 1 2 3 27 27 H 1.09003 * 109.46991 * 60.67855 * 1 2 3 28 28 H 1.08994 * 109.47546 * 180.67735 * 1 2 3 29 29 H 1.08998 * 109.47217 * 239.99772 * 2 1 3 30 30 H 1.09000 * 109.46661 * 119.99744 * 2 1 3 31 31 H 0.97001 * 119.99964 * 179.97438 * 8 7 5 32 32 H 1.00906 * 111.00359 * 30.43444 * 13 3 2 33 33 H 1.08996 * 109.47406 * 32.00965 * 14 13 3 34 34 H 1.09003 * 109.46772 * 299.99727 * 15 14 13 35 35 H 1.09003 * 109.47522 * 59.99771 * 15 14 13 36 36 H 1.09004 * 109.46521 * 299.99835 * 16 15 14 37 37 H 1.08994 * 109.47124 * 180.02562 * 16 15 14 38 38 H 1.08996 * 109.47237 * 59.99857 * 17 16 15 39 39 H 1.08996 * 109.47565 * 59.99669 * 18 17 16 40 40 H 1.09003 * 109.46772 * 299.99989 * 19 18 17 41 41 H 1.08997 * 109.46866 * 60.00247 * 19 18 17 42 42 H 1.09004 * 109.46707 * 299.99779 * 20 19 18 43 43 H 1.08999 * 109.46391 * 179.97438 * 20 19 18 44 44 H 1.08991 * 109.46816 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.47237 * 59.99572 * 21 20 19 46 46 H 1.08996 * 109.47223 * 299.99937 * 22 21 20 47 47 H 1.08998 * 109.46989 * 179.97438 * 22 21 20 48 48 H 1.08994 * 109.47156 * 179.97438 * 23 22 21 49 49 H 1.08996 * 109.47029 * 59.99249 * 23 22 21 50 50 H 1.08996 * 109.47223 * 299.99937 * 24 17 16 51 51 H 1.09002 * 109.46704 * 180.02562 * 24 17 16 52 52 H 1.08994 * 109.47072 * 299.99655 * 25 14 13 53 53 H 1.08996 * 109.47179 * 60.00052 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6007 1.9831 0.8382 5 6 3.5412 1.4444 0.1324 6 1 4.1509 1.8874 -0.6413 7 6 4.1363 0.8808 1.2410 8 7 3.3938 0.3418 2.1832 9 14 5.9971 0.8827 1.4047 10 1 6.4309 2.1169 2.1072 11 1 6.4267 -0.3068 2.1830 12 1 6.6129 0.8393 0.0541 13 7 1.6586 2.0967 -1.2587 14 6 1.5650 3.5527 -1.0880 15 6 0.1539 3.9223 -0.6263 16 6 0.0561 5.4389 -0.4490 17 6 0.3535 6.1284 -1.7821 18 6 0.2564 7.6449 -1.6046 19 6 -1.1545 8.0150 -1.1427 20 6 -1.2518 9.5317 -0.9658 21 6 -0.9546 10.2208 -2.2992 22 6 0.4563 9.8507 -2.7611 23 6 0.5536 8.3340 -2.9380 24 6 1.7646 5.7587 -2.2437 25 6 1.8626 4.2427 -2.4207 26 1 -0.3634 0.5245 0.8838 27 1 -0.3633 0.5033 -0.8960 28 1 -0.3634 -1.0275 0.0121 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.8125 -0.0551 2.9630 32 1 0.7940 1.7181 -1.6155 33 1 2.2887 3.8782 -0.3407 34 1 -0.5698 3.5969 -1.3736 35 1 -0.0583 3.4308 0.3232 36 1 0.7799 5.7647 0.2981 37 1 -0.9490 5.7022 -0.1197 38 1 -0.3702 5.8025 -2.5291 39 1 0.9803 7.9705 -0.8577 40 1 -1.8785 7.6894 -1.8897 41 1 -1.3664 7.5238 -0.1930 42 1 -0.5278 9.8576 -0.2190 43 1 -2.2571 9.7953 -0.6372 44 1 -1.0235 11.3011 -2.1730 45 1 -1.6786 9.8948 -3.0459 46 1 1.1803 10.1766 -2.0143 47 1 0.6679 10.3412 -3.7112 48 1 1.5586 8.0705 -3.2675 49 1 -0.1704 8.0082 -3.6847 50 1 2.4883 6.0846 -1.4967 51 1 1.9767 6.2503 -3.1932 52 1 2.8678 3.9794 -2.7496 53 1 1.1389 3.9172 -3.1679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663446221.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:13 Heat of formation + Delta-G solvation = -72.246278 kcal Electronic energy + Delta-G solvation = -25030.597326 eV Core-core repulsion = 21898.663243 eV Total energy + Delta-G solvation = -3131.934084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 293.241 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70979 -38.94403 -37.10261 -34.49604 -33.34187 -32.14339 -31.33013 -31.07709 -28.91513 -27.37434 -24.75630 -24.20683 -23.46097 -22.48161 -21.55290 -21.43930 -20.64673 -20.31707 -18.28781 -16.95416 -16.77383 -16.28988 -15.77433 -15.30519 -15.23590 -15.09375 -14.93259 -14.65596 -14.40607 -14.12597 -14.00840 -13.95651 -13.53251 -13.30496 -13.21674 -13.02028 -12.87112 -12.71496 -12.57023 -12.50103 -12.22910 -11.98973 -11.97455 -11.90867 -11.74670 -11.72479 -11.53607 -11.44972 -11.32379 -11.21397 -11.05869 -10.91375 -10.57691 -10.49573 -10.42756 -8.87183 -8.06013 -6.18014 1.39267 1.40235 1.51222 2.43456 3.18338 3.57206 3.74121 3.80289 3.88122 3.96681 4.12601 4.24302 4.29465 4.41102 4.49367 4.51538 4.56228 4.57080 4.59836 4.62071 4.66831 4.70692 4.71154 4.72912 4.77408 4.86357 4.90822 4.96678 5.03130 5.09985 5.12664 5.16103 5.23929 5.25919 5.27097 5.29756 5.32999 5.35130 5.37388 5.39499 5.45926 5.49287 5.53660 5.58604 5.62599 5.67847 5.74475 5.79326 5.92709 6.39349 6.59419 6.97105 7.08669 7.51270 8.96671 Molecular weight = 293.24amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.003406 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.343373 B = 8219.556281 C = 8803.882837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.230 3.770 4 H -0.033 1.033 5 C -0.510 4.510 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.686 5.686 14 C 0.096 3.904 15 C -0.136 4.136 16 C -0.104 4.104 17 C -0.070 4.070 18 C -0.076 4.076 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.108 4.108 25 C -0.095 4.095 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.259 0.741 32 H 0.326 0.674 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.046 0.954 51 H 0.079 0.921 52 H 0.046 0.954 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 17.210 -9.432 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.122 3.878 4 H -0.016 1.016 5 C -0.549 4.549 6 H 0.064 0.936 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.317 5.317 14 C -0.014 4.014 15 C -0.175 4.175 16 C -0.142 4.142 17 C -0.089 4.089 18 C -0.094 4.094 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.134 4.134 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.065 0.935 51 H 0.098 0.902 52 H 0.065 0.935 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.892 17.116 -9.505 21.935 hybrid contribution 0.441 -0.412 1.241 1.380 sum -9.451 16.704 -8.264 20.896 Atomic orbital electron populations 1.21729 0.96251 1.01097 1.00337 1.21600 0.94259 0.99210 1.01020 1.18850 0.93618 0.90402 0.84975 1.01580 1.21497 0.93071 1.36224 1.04111 0.93583 1.25673 1.02225 0.95424 0.95612 1.70003 1.36160 1.39990 1.09900 0.85629 0.80956 0.77482 0.78000 1.20434 1.20710 1.19629 1.60695 1.36735 1.03475 1.30796 1.21445 0.94958 0.88113 0.96901 1.22151 0.97728 0.97459 1.00176 1.21529 1.01462 0.93479 0.97743 1.21107 0.96714 0.94580 0.96452 1.21117 0.97231 0.93506 0.97595 1.21627 0.96389 0.96008 1.01198 1.21539 1.01443 0.95088 0.97629 1.21526 0.96886 1.00021 0.97045 1.21539 0.97163 0.95775 1.01221 1.21621 1.01738 0.95076 0.96696 1.21590 0.96888 0.94606 1.01464 1.21401 1.00978 0.94894 0.96092 0.94648 0.92439 0.92388 0.94662 0.91568 0.93140 0.85506 0.94436 0.91131 0.94736 0.93686 0.90815 0.90695 0.92424 0.91756 0.92247 0.92626 0.91623 0.91673 0.91853 0.92598 0.91485 0.91855 0.91727 0.93468 0.90213 0.93483 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 9.74 71.98 0.70 -4.54 16 2 C -0.12 -5.92 5.36 30.59 0.16 -5.75 16 3 C 0.23 11.83 1.84 44.17 0.08 11.91 16 4 H -0.03 -1.92 7.34 -2.39 -0.02 -1.93 16 5 C -0.51 -29.33 8.54 25.60 0.22 -29.11 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 7 C 0.01 0.49 5.29 84.65 0.45 0.93 16 8 N -0.92 -54.15 11.29 21.45 0.24 -53.90 16 9 Si 0.95 45.33 29.54 68.60 2.03 47.35 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 13 N -0.69 -29.53 6.06 -473.33 -2.87 -32.39 16 14 C 0.10 3.64 2.26 44.92 0.10 3.74 16 15 C -0.14 -4.34 5.16 30.60 0.16 -4.18 16 16 C -0.10 -2.72 4.85 30.60 0.15 -2.58 16 17 C -0.07 -1.55 1.78 -10.79 -0.02 -1.56 16 18 C -0.08 -1.43 1.78 -10.79 -0.02 -1.45 16 19 C -0.11 -1.95 4.85 30.60 0.15 -1.80 16 20 C -0.12 -1.79 5.92 30.60 0.18 -1.61 16 21 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 22 C -0.12 -1.74 5.92 30.60 0.18 -1.56 16 23 C -0.11 -1.87 4.85 30.60 0.15 -1.72 16 24 C -0.11 -2.70 4.85 30.58 0.15 -2.55 16 25 C -0.10 -2.97 5.53 30.58 0.17 -2.80 16 26 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.06 1.93 6.47 -2.39 -0.02 1.92 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 3.64 5.95 -2.39 -0.01 3.63 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.33 12.59 6.19 -89.69 -0.56 12.04 16 33 H 0.04 1.71 7.63 -2.39 -0.02 1.69 16 34 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 35 H 0.03 1.25 7.66 -2.39 -0.02 1.24 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.70 6.43 -2.39 -0.02 1.68 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.06 1.07 6.43 -2.39 -0.02 1.05 16 49 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.08 1.70 6.43 -2.39 -0.02 1.68 16 52 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -61.06 382.25 2.82 -58.24 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.28 Total: 26.73 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 3.14 Total: -46.03 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.62 Total: -86.30 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -61.06 2.82 -58.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663446221.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.006 kcal (2) G-P(sol) polarization free energy of solvation -61.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds