Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48501 * 109.46832 * 272.98008 * 3 2 1 5 5 H 1.48503 * 109.47403 * 32.97616 * 3 2 1 6 6 H 1.48495 * 109.47103 * 152.98054 * 3 2 1 7 7 C 1.37878 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00059 * 354.01506 * 7 2 1 9 9 C 1.50697 * 119.99953 * 174.01418 * 7 2 1 10 10 H 1.09004 * 109.47332 * 335.13937 * 9 7 2 11 11 C 1.53006 * 109.47120 * 95.14128 * 9 7 2 12 12 Cl 1.80300 * 109.47077 * 185.51715 * 11 9 7 13 13 O 1.42899 * 109.47080 * 215.14260 * 9 7 2 14 14 C 1.35901 * 117.00168 * 141.07896 * 13 9 7 15 15 C 1.38765 * 120.25018 * 185.66667 * 14 13 9 16 16 C 1.37711 * 119.72811 * 180.24730 * 15 14 13 17 17 C 1.39246 * 120.84805 * 359.75992 * 16 15 14 18 18 C 1.37580 * 119.41416 * 359.80999 * 17 16 15 19 19 C 1.38387 * 120.24952 * 5.37993 * 14 13 9 20 20 C 1.50882 * 122.90495 * 180.99447 * 18 17 16 21 21 C 1.50969 * 109.56514 * 349.29121 * 20 18 17 22 22 O 1.20752 * 121.60702 * 222.22774 * 21 20 18 23 23 C 1.51575 * 116.78437 * 42.25228 * 21 20 18 24 24 C 1.50546 * 116.90496 * 179.29011 * 17 16 15 25 25 H 0.97003 * 119.99489 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47180 * 65.51726 * 11 9 7 27 27 H 1.09000 * 109.46932 * 305.51824 * 11 9 7 28 28 H 1.08000 * 120.13252 * 0.22681 * 15 14 13 29 29 H 1.07998 * 119.58068 * 179.78201 * 16 15 14 30 30 H 1.07999 * 119.69611 * 0.12579 * 19 14 13 31 31 H 1.09004 * 109.45291 * 229.26478 * 20 18 17 32 32 H 1.08999 * 109.45644 * 109.32370 * 20 18 17 33 33 H 1.08997 * 109.82326 * 178.09819 * 23 21 20 34 34 H 1.08996 * 109.87795 * 57.19902 * 23 21 20 35 35 H 1.09000 * 109.08907 * 279.82934 * 24 17 16 36 36 H 1.08995 * 109.08914 * 38.89769 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4336 2.0828 -1.3982 5 1 1.4796 2.6338 0.7620 6 1 3.5768 1.4228 0.6360 7 6 2.0046 -1.1941 0.0005 8 1 1.4690 -2.1268 0.0985 9 6 3.5054 -1.1977 -0.1356 10 1 3.8261 -0.2901 -0.6471 11 6 4.1434 -1.2524 1.2541 12 17 5.9328 -1.0935 1.1005 13 8 3.9123 -2.3397 -0.8919 14 6 4.9311 -2.1645 -1.7741 15 6 5.3028 -3.1946 -2.6264 16 6 6.3400 -3.0070 -3.5126 17 6 7.0200 -1.7932 -3.5693 18 6 6.6456 -0.7691 -2.7304 19 6 5.6018 -0.9555 -1.8334 20 6 7.3127 0.5842 -2.7404 21 6 8.5630 0.5252 -3.5844 22 8 9.5884 1.0586 -3.2348 23 6 8.4691 -0.2353 -4.8922 24 6 8.1497 -1.6908 -4.5592 25 1 -0.4849 0.8401 -0.0004 26 1 3.9025 -2.2043 1.7272 27 1 3.7570 -0.4356 1.8636 28 1 4.7809 -4.1396 -2.5946 29 1 6.6296 -3.8115 -4.1724 30 1 5.3135 -0.1508 -1.1733 31 1 7.5758 0.8667 -1.7210 32 1 6.6282 1.3233 -3.1566 33 1 9.4196 -0.1775 -5.4225 34 1 7.6754 0.1855 -5.5094 35 1 9.0370 -2.1630 -4.1377 36 1 7.8696 -2.2117 -5.4748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226934708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = -72.524429 kcal Electronic energy + Delta-G solvation = -21395.943736 eV Core-core repulsion = 18063.655715 eV Total energy + Delta-G solvation = -3332.288021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 294.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.39810 -39.18235 -37.50740 -35.27347 -34.13315 -33.12169 -32.48031 -30.63983 -28.63052 -28.14938 -25.40725 -23.81136 -22.71877 -21.68395 -20.54828 -18.78689 -17.84598 -16.95217 -16.17201 -15.66522 -15.58067 -15.09759 -14.75965 -14.50704 -14.24680 -14.07250 -13.57242 -13.30473 -13.14373 -12.93756 -12.80524 -12.54707 -12.47970 -12.06319 -11.76260 -11.70846 -11.35801 -11.12579 -10.99366 -10.60165 -10.57404 -10.15883 -9.83712 -9.68393 -9.52494 -9.37728 -8.95883 -8.46110 -7.48018 -6.52313 -4.59452 1.61857 1.75108 1.87174 2.89941 3.02376 3.07752 3.11730 3.96671 3.98962 4.01302 4.06537 4.57641 4.68885 4.83273 4.87229 5.02970 5.19514 5.27165 5.38045 5.49828 5.59546 5.64993 5.70708 5.76494 5.79798 5.81958 5.85949 6.00913 6.12331 6.30830 6.48793 6.63039 6.77420 6.81196 7.09556 7.17848 7.37395 7.86301 8.31268 8.61919 9.04670 10.58270 Molecular weight = 294.08amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.005468 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.555152 B = 5119.830517 C = 5359.665846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.088 3.912 3 Si 0.858 3.142 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.527 4.527 8 H 0.090 0.910 9 C 0.177 3.823 10 H 0.051 0.949 11 C -0.039 4.039 12 Cl -0.228 7.228 13 O -0.300 6.300 14 C 0.160 3.840 15 C -0.159 4.159 16 C -0.081 4.081 17 C -0.142 4.142 18 C -0.037 4.037 19 C -0.201 4.201 20 C -0.133 4.133 21 C 0.370 3.630 22 O -0.459 6.459 23 C -0.168 4.168 24 C -0.060 4.060 25 H 0.274 0.726 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.246 -1.284 -7.109 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.119 4.119 3 Si 0.683 3.317 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.564 4.564 8 H 0.108 0.892 9 C 0.122 3.878 10 H 0.068 0.932 11 C -0.102 4.102 12 Cl -0.202 7.202 13 O -0.212 6.212 14 C 0.113 3.887 15 C -0.178 4.178 16 C -0.099 4.099 17 C -0.143 4.143 18 C -0.037 4.037 19 C -0.220 4.220 20 C -0.170 4.170 21 C 0.246 3.754 22 O -0.332 6.332 23 C -0.206 4.206 24 C -0.097 4.097 25 H 0.084 0.916 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.602 -1.046 -6.856 14.385 hybrid contribution 0.176 1.088 0.221 1.124 sum 12.778 0.042 -6.635 14.398 Atomic orbital electron populations 1.69856 1.06225 1.27996 1.46138 1.24949 0.94848 0.98887 0.93240 0.87127 0.81020 0.83833 0.79749 1.19174 1.20045 1.17976 1.20722 0.86934 0.96034 1.52714 0.89179 1.20800 0.95581 0.85282 0.86161 0.93163 1.25993 0.76133 1.05023 1.03033 1.98674 1.24278 1.98755 1.98519 1.86277 1.46139 1.39252 1.49555 1.19050 0.87523 0.93007 0.89146 1.20370 1.00340 0.99165 0.97886 1.20819 0.94895 0.96226 0.97944 1.19210 1.00198 0.94509 1.00353 1.18874 0.95790 0.93409 0.95659 1.21368 0.99208 0.98726 1.02666 1.21203 0.96653 0.96793 1.02362 1.24706 0.88110 0.74923 0.87679 1.90398 1.32603 1.37754 1.72455 1.22254 1.04412 0.97045 0.96870 1.20140 0.96782 0.94520 0.98300 0.91588 0.88742 0.88370 0.85445 0.86000 0.84995 0.88083 0.86916 0.89248 0.88211 0.90892 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.03 13.96 55.43 0.77 -23.26 16 2 C 0.09 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.86 18.88 26.50 -169.99 -4.50 14.38 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.27 6.21 56.52 0.35 -4.92 16 7 C -0.53 -13.61 9.23 -34.44 -0.32 -13.93 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.18 3.92 1.69 -27.88 -0.05 3.87 16 10 H 0.05 1.11 2.99 -51.93 -0.16 0.96 16 11 C -0.04 -0.77 6.01 37.16 0.22 -0.54 16 12 Cl -0.23 -4.18 25.82 -51.86 -1.34 -5.52 16 13 O -0.30 -6.51 9.69 -19.43 -0.19 -6.70 16 14 C 0.16 3.04 6.23 -39.33 -0.24 2.80 16 15 C -0.16 -2.57 9.99 -39.58 -0.40 -2.96 16 16 C -0.08 -1.09 9.53 -39.40 -0.38 -1.46 16 17 C -0.14 -1.91 5.74 -104.56 -0.60 -2.51 16 18 C -0.04 -0.56 5.78 -104.53 -0.60 -1.16 16 19 C -0.20 -3.59 6.85 -39.29 -0.27 -3.85 16 20 C -0.13 -1.76 5.91 -28.81 -0.17 -1.93 16 21 C 0.37 4.76 6.71 -28.47 -0.19 4.57 16 22 O -0.46 -7.26 17.93 6.01 0.11 -7.15 16 23 C -0.17 -1.63 6.24 -27.61 -0.17 -1.80 16 24 C -0.06 -0.60 5.64 -28.12 -0.16 -0.76 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 27 H 0.10 1.88 7.20 -51.93 -0.37 1.51 16 28 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.12 1.26 8.04 -52.49 -0.42 0.84 16 30 H 0.13 2.48 4.82 -52.49 -0.25 2.23 16 31 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -28.64 309.74 -8.09 -36.73 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.19 Total: 4.37 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -3.42 Total: -17.51 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.77 Total: -23.26 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.08 Total: -13.86 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.50 Total: 14.38 kcal Atomic # 17 Polarization: -4.18 SS G_CDS: -1.34 Total: -5.52 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.64 -8.09 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226934708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.793 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds