Wall clock time and date at job start Tue Mar 31 2020 06:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47340 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.47003 * 30.00458 * 3 2 1 6 6 H 1.48498 * 109.47056 * 150.00010 * 3 2 1 7 7 C 1.37873 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99937 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00048 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99896 * 270.00022 * 10 9 7 12 12 C 1.52994 * 109.47022 * 269.99674 * 11 10 9 13 13 C 1.53005 * 117.50011 * 243.62080 * 12 11 10 14 14 C 1.52998 * 60.00015 * 252.51267 * 13 12 11 15 15 C 1.34777 * 120.00271 * 89.99557 * 10 9 7 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 10 9 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 10 9 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 10 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 15 20 20 C 1.33640 * 122.74883 * 124.73122 * 19 18 17 21 21 S 1.76197 * 107.92385 * 179.97438 * 20 19 18 22 22 C 1.70970 * 90.28159 * 0.27434 * 21 20 19 23 23 N 1.29021 * 110.16781 * 359.84091 * 22 21 20 24 24 H 0.96999 * 119.99664 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47002 * 60.00000 * 9 7 2 26 26 H 1.09004 * 109.46952 * 299.99661 * 9 7 2 27 27 H 1.08997 * 109.47024 * 30.00155 * 11 10 9 28 28 H 1.09000 * 109.46875 * 149.99915 * 11 10 9 29 29 H 1.08995 * 115.55252 * 29.33202 * 12 11 10 30 30 H 1.09003 * 117.49878 * 0.02562 * 13 12 11 31 31 H 1.09005 * 117.49831 * 145.02308 * 13 12 11 32 32 H 1.09005 * 117.49966 * 252.50789 * 14 13 12 33 33 H 1.08996 * 117.49942 * 107.49128 * 14 13 12 34 34 H 1.09002 * 109.47152 * 60.00245 * 17 15 10 35 35 H 1.09001 * 109.46980 * 300.00345 * 17 15 10 36 36 H 1.09001 * 109.47194 * 299.99742 * 18 17 15 37 37 H 1.08992 * 109.47399 * 59.99914 * 18 17 15 38 38 H 1.08008 * 126.03829 * 0.03550 * 20 19 18 39 39 H 1.08005 * 124.91710 * 179.83869 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.2446 -3.2667 1.2660 12 6 5.6897 -3.0266 1.7072 13 6 6.6132 -4.2434 1.7944 14 6 6.1109 -3.5710 3.0736 15 6 4.2240 -3.2099 -1.1699 16 8 4.0219 -2.6373 -2.2198 17 6 4.7259 -4.6309 -1.1710 18 6 4.8959 -5.1105 -2.6139 19 6 5.3984 -6.5313 -2.6150 20 6 4.7685 -7.5203 -3.2562 21 16 5.6861 -9.0027 -3.0011 22 6 6.8209 -8.1468 -2.0510 23 7 6.4912 -6.9016 -1.9786 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.5641 -2.8831 2.0261 28 1 4.0776 -4.3358 1.1350 29 1 6.1293 -2.0829 1.3842 30 1 6.1913 -5.2149 1.5370 31 1 7.6606 -4.1003 1.5286 32 1 6.8278 -2.9857 3.6495 33 1 5.3584 -4.1002 3.6582 34 1 4.0078 -5.2702 -0.6575 35 1 5.6861 -4.6775 -0.6574 36 1 3.9358 -5.0638 -3.1279 37 1 5.6141 -4.4712 -3.1271 38 1 3.8584 -7.4272 -3.8303 39 1 7.6882 -8.5851 -1.5797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171544708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:22 Heat of formation + Delta-G solvation = 32.338243 kcal Electronic energy + Delta-G solvation = -21173.280166 eV Core-core repulsion = 18015.708884 eV Total energy + Delta-G solvation = -3157.571282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09434 -39.15785 -37.19472 -34.55641 -33.31327 -32.41072 -30.04567 -28.39414 -26.42789 -25.48956 -24.09102 -22.27080 -21.84796 -20.67799 -19.65906 -18.35351 -17.97980 -16.88610 -16.66830 -15.85690 -15.45567 -15.26694 -14.74720 -14.55083 -14.05296 -13.95073 -13.51817 -13.36173 -12.85228 -12.72467 -12.53300 -12.22373 -11.83742 -11.50552 -11.43780 -11.43180 -11.39665 -10.94173 -10.82102 -10.51078 -10.27999 -10.09189 -9.82746 -9.79974 -9.62769 -9.50296 -9.05433 -8.83455 -8.56390 -7.69000 -6.06510 -4.04831 0.57284 1.23595 1.56543 2.66946 3.31195 3.37136 3.39119 3.41156 3.75853 4.00082 4.09468 4.41981 4.79412 4.93717 5.00224 5.04520 5.13385 5.18634 5.26210 5.30451 5.40899 5.49144 5.56381 5.70579 5.78836 5.90300 5.98227 5.99434 6.07554 6.18447 6.19453 6.31707 6.43825 6.75183 6.98813 7.39110 7.58503 7.64274 8.30140 8.49851 8.95648 9.03606 9.54289 11.06944 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.003965 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.040928 B = 7059.244367 C = 8135.527955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.216 3.784 10 N -0.590 5.590 11 C 0.143 3.857 12 C -0.167 4.167 13 C -0.180 4.180 14 C -0.177 4.177 15 C 0.511 3.489 16 O -0.543 6.543 17 C -0.132 4.132 18 C -0.030 4.030 19 C 0.073 3.927 20 C -0.251 4.251 21 S 0.100 5.900 22 C 0.022 3.978 23 N -0.462 5.462 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.179 0.821 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.411 -17.493 0.059 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.095 3.905 10 N -0.321 5.321 11 C 0.019 3.981 12 C -0.187 4.187 13 C -0.217 4.217 14 C -0.215 4.215 15 C 0.298 3.702 16 O -0.421 6.421 17 C -0.172 4.172 18 C -0.070 4.070 19 C -0.058 4.058 20 C -0.390 4.390 21 S 0.351 5.649 22 C -0.277 4.277 23 N -0.175 5.175 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.196 0.804 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 14.383 -17.733 -0.491 22.838 hybrid contribution 0.065 1.633 0.161 1.642 sum 14.448 -16.100 -0.330 21.635 Atomic orbital electron populations 1.69902 1.06190 1.26932 1.50698 1.24852 0.94748 0.98925 0.94480 0.86853 0.80202 0.83820 0.78851 1.19930 1.21113 1.19050 1.21337 0.89259 0.94790 1.51165 0.90792 1.19650 0.95580 0.77980 0.97299 1.47849 1.64074 1.15748 1.04418 1.21030 0.93087 0.96848 0.87170 1.22919 0.96955 0.98524 1.00291 1.23030 0.99614 0.97051 1.01974 1.22905 1.03630 1.04222 0.90732 1.20352 0.77937 0.88005 0.83920 1.90660 1.52405 1.68066 1.30981 1.21625 1.03297 0.94527 0.97788 1.19967 1.02187 0.87705 0.97150 1.20507 0.91145 0.98139 0.96045 1.26922 1.07264 0.94379 1.10443 1.83994 1.19698 1.13870 1.47321 1.28407 1.04233 0.92307 1.02745 1.66129 1.15665 1.15301 1.20434 0.92610 0.95267 0.94613 0.89379 0.91156 0.87594 0.88782 0.89161 0.89061 0.88740 0.89776 0.88271 0.89326 0.89355 0.80385 0.78535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.12 16 4 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 8 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 9 C 0.22 5.32 4.23 -5.20 -0.02 5.29 16 10 N -0.59 -12.23 2.46 -175.06 -0.43 -12.65 16 11 C 0.14 2.32 5.49 -4.04 -0.02 2.30 16 12 C -0.17 -2.32 5.95 -90.62 -0.54 -2.86 16 13 C -0.18 -2.06 9.18 -26.73 -0.25 -2.30 16 14 C -0.18 -1.99 10.25 -26.73 -0.27 -2.27 16 15 C 0.51 10.46 7.67 -10.98 -0.08 10.37 16 16 O -0.54 -13.30 15.56 5.56 0.09 -13.21 16 17 C -0.13 -2.02 4.15 -27.88 -0.12 -2.14 16 18 C -0.03 -0.42 5.00 -27.88 -0.14 -0.56 16 19 C 0.07 0.91 6.08 -84.23 -0.51 0.40 16 20 C -0.25 -2.63 11.07 29.12 0.32 -2.31 16 21 S 0.10 0.82 23.22 -107.50 -2.50 -1.68 16 22 C 0.02 0.20 12.23 51.58 0.63 0.83 16 23 N -0.46 -5.62 10.34 -11.90 -0.12 -5.74 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 26 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 27 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 28 H 0.07 1.00 6.17 -51.93 -0.32 0.68 16 29 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.20 7.40 -51.93 -0.38 0.82 16 35 H 0.10 1.42 6.77 -51.93 -0.35 1.07 16 36 H 0.09 1.29 7.99 -51.93 -0.41 0.87 16 37 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 38 H 0.18 1.58 8.06 -52.48 -0.42 1.15 16 39 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 341.88 15.07 5.15 5.15 Total: -1.00 -34.22 341.88 -8.72 -42.94 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.57 Total: 1.96 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -1.44 Total: -6.80 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.22 Total: -45.48 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.12 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.50 Total: -1.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.22 -8.72 -42.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171544708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.276 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds