Wall clock time and date at job start Tue Mar 31 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47340 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.47003 * 30.00458 * 3 2 1 6 6 H 1.48498 * 109.47056 * 150.00010 * 3 2 1 7 7 C 1.37873 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99937 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00048 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99896 * 270.00022 * 10 9 7 12 12 C 1.52994 * 109.47022 * 269.99674 * 11 10 9 13 13 C 1.53005 * 117.50011 * 243.62080 * 12 11 10 14 14 C 1.52998 * 60.00015 * 252.51267 * 13 12 11 15 15 C 1.34777 * 120.00271 * 89.99557 * 10 9 7 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 10 9 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 10 9 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 10 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 15 20 20 C 1.33640 * 122.74883 * 124.73122 * 19 18 17 21 21 S 1.76197 * 107.92385 * 179.97438 * 20 19 18 22 22 C 1.70970 * 90.28159 * 0.27434 * 21 20 19 23 23 N 1.29021 * 110.16781 * 359.84091 * 22 21 20 24 24 H 0.96999 * 119.99664 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47002 * 60.00000 * 9 7 2 26 26 H 1.09004 * 109.46952 * 299.99661 * 9 7 2 27 27 H 1.08997 * 109.47024 * 30.00155 * 11 10 9 28 28 H 1.09000 * 109.46875 * 149.99915 * 11 10 9 29 29 H 1.08995 * 115.55252 * 29.33202 * 12 11 10 30 30 H 1.09003 * 117.49878 * 0.02562 * 13 12 11 31 31 H 1.09005 * 117.49831 * 145.02308 * 13 12 11 32 32 H 1.09005 * 117.49966 * 252.50789 * 14 13 12 33 33 H 1.08996 * 117.49942 * 107.49128 * 14 13 12 34 34 H 1.09002 * 109.47152 * 60.00245 * 17 15 10 35 35 H 1.09001 * 109.46980 * 300.00345 * 17 15 10 36 36 H 1.09001 * 109.47194 * 299.99742 * 18 17 15 37 37 H 1.08992 * 109.47399 * 59.99914 * 18 17 15 38 38 H 1.08008 * 126.03829 * 0.03550 * 20 19 18 39 39 H 1.08005 * 124.91710 * 179.83869 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5752 -0.0022 11 6 4.2446 -3.2667 1.2660 12 6 5.6897 -3.0266 1.7072 13 6 6.6132 -4.2434 1.7944 14 6 6.1109 -3.5710 3.0736 15 6 4.2240 -3.2099 -1.1699 16 8 4.0219 -2.6373 -2.2198 17 6 4.7259 -4.6309 -1.1710 18 6 4.8959 -5.1105 -2.6139 19 6 5.3984 -6.5313 -2.6150 20 6 4.7685 -7.5203 -3.2562 21 16 5.6861 -9.0027 -3.0011 22 6 6.8209 -8.1468 -2.0510 23 7 6.4912 -6.9016 -1.9786 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.5641 -2.8831 2.0261 28 1 4.0776 -4.3358 1.1350 29 1 6.1293 -2.0829 1.3842 30 1 6.1913 -5.2149 1.5370 31 1 7.6606 -4.1003 1.5286 32 1 6.8278 -2.9857 3.6495 33 1 5.3584 -4.1002 3.6582 34 1 4.0078 -5.2702 -0.6575 35 1 5.6861 -4.6775 -0.6574 36 1 3.9358 -5.0638 -3.1279 37 1 5.6141 -4.4712 -3.1271 38 1 3.8584 -7.4272 -3.8303 39 1 7.6882 -8.5851 -1.5797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171544708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:21 Heat of formation + Delta-G solvation = 10.460356 kcal Electronic energy + Delta-G solvation = -21174.228863 eV Core-core repulsion = 18015.708884 eV Total energy + Delta-G solvation = -3158.519979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15870 -40.49499 -38.38797 -36.21749 -34.68013 -34.35926 -31.24477 -30.08248 -27.78596 -26.59868 -25.32670 -23.64021 -23.15089 -21.84179 -20.48672 -19.88152 -19.08651 -18.84916 -18.00930 -17.18522 -16.87401 -16.53013 -15.96830 -15.84339 -15.58300 -15.01951 -14.72664 -14.54992 -14.18560 -14.10925 -13.96319 -13.83336 -13.48142 -13.02121 -12.87280 -12.55000 -12.46640 -12.43010 -12.26530 -12.04034 -11.96335 -11.76515 -11.24440 -10.92750 -10.83308 -10.58011 -10.55387 -10.37144 -9.70184 -9.42808 -8.34597 -6.39324 -0.15861 0.53808 0.83387 1.31624 1.35493 1.44061 1.78317 1.83152 2.28455 2.30595 2.97211 2.99800 3.30286 3.65576 3.88986 3.97804 4.04024 4.14142 4.17512 4.29228 4.31661 4.47401 4.58454 4.61395 4.72400 4.74436 4.86309 4.86997 4.94134 4.99266 5.04973 5.09297 5.25597 5.32498 5.34354 5.45443 5.62620 6.23493 6.61423 6.68917 6.82137 7.20963 7.40896 8.82340 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.003965 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.040928 B = 7059.244367 C = 8135.527955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.946 3.054 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.030 0.970 9 C 0.226 3.774 10 N -0.597 5.597 11 C 0.142 3.858 12 C -0.190 4.190 13 C -0.164 4.164 14 C -0.160 4.160 15 C 0.501 3.499 16 O -0.593 6.593 17 C -0.112 4.112 18 C -0.025 4.025 19 C 0.054 3.946 20 C -0.265 4.265 21 S 0.158 5.842 22 C 0.022 3.978 23 N -0.494 5.494 24 H 0.269 0.731 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.187 0.813 39 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.911 -19.190 1.206 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.164 1.164 7 C -0.574 4.574 8 H 0.048 0.952 9 C 0.104 3.896 10 N -0.326 5.326 11 C 0.019 3.981 12 C -0.210 4.210 13 C -0.201 4.201 14 C -0.198 4.198 15 C 0.290 3.710 16 O -0.474 6.474 17 C -0.152 4.152 18 C -0.065 4.065 19 C -0.077 4.077 20 C -0.404 4.404 21 S 0.411 5.589 22 C -0.276 4.276 23 N -0.208 5.208 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.204 0.796 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 16.909 -19.481 0.697 25.805 hybrid contribution -0.757 1.986 -0.221 2.137 sum 16.153 -17.495 0.476 23.816 Atomic orbital electron populations 1.70047 1.08120 1.28302 1.51969 1.25816 0.95658 1.03194 0.93852 0.85739 0.79838 0.78546 0.78999 1.20139 1.19829 1.16413 1.21551 0.91503 0.93282 1.51044 0.95192 1.19290 0.92737 0.80712 0.96911 1.47944 1.63590 1.14671 1.06430 1.21222 0.94734 0.97409 0.84711 1.22659 0.95623 0.99303 1.03377 1.23098 0.99467 0.96088 1.01471 1.23021 1.03521 1.03263 0.89955 1.21308 0.76946 0.89737 0.82995 1.90622 1.54559 1.69560 1.32702 1.21523 1.03899 0.90710 0.99046 1.19779 1.01352 0.89368 0.96037 1.20175 0.92352 0.97230 0.97992 1.27156 1.07764 0.95664 1.09836 1.83821 1.17896 1.11351 1.45844 1.28997 1.04990 0.91590 1.02017 1.66097 1.15947 1.17006 1.21768 0.92247 0.93634 0.96438 0.90710 0.89041 0.89160 0.87890 0.88241 0.87765 0.87690 0.88378 0.86672 0.90440 0.91008 0.79568 0.75241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.37 13.96 21.45 0.30 -60.08 16 2 C 0.01 0.77 5.47 84.65 0.46 1.24 16 3 Si 0.95 45.39 27.47 68.60 1.88 47.27 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 7 C -0.54 -32.16 9.94 25.60 0.25 -31.91 16 8 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 9 C 0.23 11.38 4.23 85.63 0.36 11.75 16 10 N -0.60 -25.24 2.46 -826.17 -2.03 -27.26 16 11 C 0.14 4.54 5.49 86.38 0.47 5.01 16 12 C -0.19 -4.97 5.95 -10.79 -0.06 -5.03 16 13 C -0.16 -3.27 9.18 30.60 0.28 -2.98 16 14 C -0.16 -3.12 10.25 30.59 0.31 -2.81 16 15 C 0.50 21.12 7.67 87.66 0.67 21.79 16 16 O -0.59 -30.47 15.56 -3.02 -0.05 -30.52 16 17 C -0.11 -3.41 4.15 29.85 0.12 -3.28 16 18 C -0.02 -0.73 5.00 29.85 0.15 -0.58 16 19 C 0.05 1.30 6.08 41.52 0.25 1.55 16 20 C -0.26 -5.18 11.07 66.78 0.74 -4.44 16 21 S 0.16 2.13 23.22 -56.49 -1.31 0.82 16 22 C 0.02 0.32 12.23 130.66 1.60 1.92 16 23 N -0.49 -11.04 10.34 -191.56 -1.98 -13.02 16 24 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 25 H 0.05 2.14 7.13 -2.39 -0.02 2.12 16 26 H 0.02 0.95 6.85 -2.39 -0.02 0.93 16 27 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 28 H 0.09 2.48 6.17 -2.39 -0.01 2.47 16 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.10 1.89 7.87 -2.39 -0.02 1.87 16 31 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 2.72 7.40 -2.39 -0.02 2.70 16 35 H 0.12 3.15 6.77 -2.39 -0.02 3.14 16 36 H 0.08 2.37 7.99 -2.39 -0.02 2.35 16 37 H 0.07 2.29 8.10 -2.39 -0.02 2.27 16 38 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.23 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -77.94 341.88 3.42 -74.51 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.99 Total: 16.05 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.62 Total: -7.79 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.71 Total: -100.36 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.31 Total: 0.82 kcal Total: -77.94 3.42 -74.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171544708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.974 kcal (2) G-P(sol) polarization free energy of solvation -77.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds