Wall clock time and date at job start Tue Mar 31 2020 07:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38295 * 119.91592 * 2 1 4 4 C 1.38122 * 120.11908 * 180.02562 * 3 2 1 5 5 C 1.38870 * 119.94760 * 0.02562 * 4 3 2 6 6 N 1.39821 * 120.08640 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99742 * 326.52738 * 6 5 4 8 8 O 1.21379 * 120.00252 * 5.17112 * 7 6 5 9 9 C 1.49347 * 119.99816 * 185.17900 * 7 6 5 10 10 O 1.21361 * 119.99827 * 359.69966 * 9 7 6 11 11 N 1.34777 * 120.00013 * 179.70018 * 9 7 6 12 12 C 1.46499 * 119.99978 * 354.34148 * 11 9 7 13 13 C 1.46498 * 119.99761 * 174.33728 * 11 9 7 14 14 C 1.50696 * 109.47062 * 90.00065 * 13 11 9 15 15 H 1.08001 * 119.99775 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00072 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47129 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47379 * 119.99879 * 18 16 14 21 21 H 1.48498 * 109.46683 * 239.99908 * 18 16 14 22 22 C 1.39114 * 119.83196 * 0.02562 * 5 4 3 23 23 F 1.35101 * 120.05926 * 179.97438 * 22 5 4 24 24 C 1.38274 * 119.91130 * 180.25769 * 2 1 3 25 25 H 1.09001 * 109.47282 * 89.99572 * 1 2 3 26 26 H 1.08996 * 109.46687 * 209.99798 * 1 2 3 27 27 H 1.08996 * 109.46807 * 329.99648 * 1 2 3 28 28 H 1.08002 * 119.94232 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.02490 * 179.97438 * 4 3 2 30 30 H 0.96995 * 120.00420 * 146.51715 * 6 5 4 31 31 H 1.08999 * 109.47420 * 84.06548 * 12 11 9 32 32 H 1.09000 * 109.46861 * 204.06234 * 12 11 9 33 33 H 1.09001 * 109.46852 * 324.06236 * 12 11 9 34 34 H 1.09002 * 109.46912 * 209.99849 * 13 11 9 35 35 H 1.08999 * 109.47374 * 329.99911 * 13 11 9 36 36 H 0.97000 * 120.00157 * 180.02562 * 17 16 14 37 37 H 1.07999 * 119.97794 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5780 1.2036 -0.0005 5 6 4.2755 0.0028 -0.0016 6 7 5.6737 0.0043 -0.0027 7 6 6.3460 0.9790 -0.6466 8 8 5.7414 1.9059 -1.1452 9 6 7.8349 0.9186 -0.7466 10 8 8.4398 -0.0054 -0.2434 11 7 8.5067 1.8901 -1.3957 12 6 7.7719 2.9381 -2.1085 13 6 9.9716 1.8982 -1.3882 14 6 10.4843 1.1068 -2.5637 15 1 9.7884 0.6444 -3.2481 16 6 11.8416 0.9739 -2.7660 17 7 12.6890 1.5373 -1.9329 18 14 12.4771 -0.0066 -4.2236 19 1 11.3289 -0.5354 -5.0029 20 1 13.3013 0.8733 -5.0906 21 1 13.3063 -1.1377 -3.7355 22 6 3.5796 -1.2018 -0.0027 23 9 4.2535 -2.3727 -0.0043 24 6 2.1966 -1.1985 -0.0054 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6545 2.1327 -0.0004 29 1 4.1151 2.1405 -0.0010 30 1 6.1599 -0.6959 0.4600 31 1 7.4904 3.7248 -1.4086 32 1 8.4046 3.3572 -2.8910 33 1 6.8743 2.5118 -2.5565 34 1 10.3296 2.9254 -1.4579 35 1 10.3328 1.4495 -0.4628 36 1 13.6439 1.4441 -2.0754 37 1 1.6548 -2.1328 -0.0100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271741663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:28 Heat of formation + Delta-G solvation = -76.626462 kcal Electronic energy + Delta-G solvation = -22991.525589 eV Core-core repulsion = 19263.016067 eV Total energy + Delta-G solvation = -3728.509522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.03745 -40.87127 -39.25604 -37.90771 -35.81713 -34.61582 -32.60970 -31.77246 -30.78561 -28.17946 -27.20683 -26.03692 -24.32449 -23.37054 -22.40418 -21.23164 -19.66697 -18.06415 -17.25398 -17.06596 -16.68195 -16.38792 -15.95332 -15.75416 -15.39945 -15.06523 -14.48742 -14.39620 -14.10572 -13.88983 -13.73182 -13.51054 -13.13636 -12.51660 -12.41285 -12.31017 -12.12577 -12.08455 -11.97499 -11.57759 -11.29231 -10.96648 -10.82610 -10.63968 -10.38691 -10.22388 -9.68987 -9.09088 -8.84623 -8.50629 -8.25352 -7.84275 -6.11687 -4.16884 0.79468 1.00019 1.81725 2.56978 3.27491 3.32495 3.35161 3.40009 3.66447 3.91322 4.00377 4.39595 4.44631 4.58234 4.71989 4.91924 4.97631 5.23289 5.24131 5.27963 5.32721 5.59873 5.75039 5.86036 5.89990 5.97728 6.07590 6.15610 6.26508 6.44741 6.70296 6.78122 7.06431 7.23478 7.32217 7.75255 7.85420 8.10361 8.14198 8.57103 8.87783 9.48326 10.96645 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.003364 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.690498 B = 8321.596212 C = 8771.273332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.078 4.078 3 C -0.111 4.111 4 C -0.093 4.093 5 C 0.114 3.886 6 N -0.649 5.649 7 C 0.512 3.488 8 O -0.501 6.501 9 C 0.494 3.506 10 O -0.519 6.519 11 N -0.561 5.561 12 C 0.078 3.922 13 C 0.242 3.758 14 C -0.529 4.529 15 H 0.060 0.940 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.901 3.099 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.077 3.923 23 F -0.134 7.134 24 C -0.138 4.138 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.425 0.575 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.264 0.736 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.921 -0.541 4.689 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.130 4.130 4 C -0.113 4.113 5 C 0.018 3.982 6 N -0.296 5.296 7 C 0.296 3.704 8 O -0.376 6.376 9 C 0.274 3.726 10 O -0.396 6.396 11 N -0.293 5.293 12 C -0.065 4.065 13 C 0.124 3.876 14 C -0.568 4.568 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.728 3.272 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.056 3.944 23 F -0.113 7.113 24 C -0.157 4.157 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.264 0.736 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.677 -0.344 4.590 23.139 hybrid contribution 0.880 -1.112 -0.631 1.551 sum -21.797 -1.456 3.959 22.202 Atomic orbital electron populations 1.20780 0.90421 1.03027 1.02636 1.19758 0.96450 0.92163 0.99518 1.21024 0.93439 0.97921 1.00598 1.21338 0.94092 0.97520 0.98354 1.17820 0.83071 0.93141 1.04189 1.43150 1.04006 1.29942 1.52504 1.21031 0.90125 0.81743 0.77538 1.90654 1.70134 1.32318 1.44446 1.19459 0.86131 0.84485 0.82503 1.90762 1.68684 1.32343 1.47820 1.48129 1.09809 1.24227 1.47108 1.22050 0.97109 0.90598 0.96723 1.19539 0.70839 0.98261 0.98975 1.21414 0.91870 1.33122 1.10368 0.92166 1.24932 0.96588 0.95645 0.96842 1.69934 1.02563 1.44087 1.36656 0.86392 0.78857 0.79812 0.82094 1.19720 1.20856 1.20781 1.17496 0.90229 0.79994 1.06720 1.91513 1.80321 1.45365 1.94100 1.20826 0.91225 0.99514 1.04126 0.90864 0.91378 0.91161 0.84932 0.82871 0.73620 0.93068 0.90984 0.90047 0.94027 0.93499 0.92609 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.08 -0.69 5.88 -104.58 -0.62 -1.30 16 3 C -0.11 -1.06 9.69 -39.60 -0.38 -1.44 16 4 C -0.09 -1.13 8.71 -39.39 -0.34 -1.47 16 5 C 0.11 1.53 6.34 -83.66 -0.53 1.00 16 6 N -0.65 -9.80 5.22 -10.24 -0.05 -9.85 16 7 C 0.51 8.88 7.62 -11.63 -0.09 8.79 16 8 O -0.50 -8.53 10.59 5.47 0.06 -8.47 16 9 C 0.49 10.44 7.72 -11.63 -0.09 10.35 16 10 O -0.52 -12.40 16.12 5.49 0.09 -12.31 16 11 N -0.56 -12.23 2.86 -183.51 -0.52 -12.75 16 12 C 0.08 1.39 9.26 59.85 0.55 1.94 16 13 C 0.24 6.25 5.09 -5.20 -0.03 6.23 16 14 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 15 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 18 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 C 0.08 0.96 7.31 -39.23 -0.29 0.67 16 23 F -0.13 -1.80 16.94 2.25 0.04 -1.76 16 24 C -0.14 -1.36 9.67 -39.55 -0.38 -1.74 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.15 1.97 6.08 -52.49 -0.32 1.65 16 30 H 0.43 6.18 8.11 -40.82 -0.33 5.85 16 31 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 33 H 0.08 1.40 5.85 -51.93 -0.30 1.10 16 34 H 0.04 1.07 8.07 -51.93 -0.42 0.66 16 35 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -31.64 326.34 -6.27 -37.90 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.25 Total: 1.83 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -2.25 Total: 9.19 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.16 Total: -48.02 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.15 Total: -20.78 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.64 -6.27 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271741663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.724 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds