Wall clock time and date at job start Tue Mar 31 2020 07:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38295 * 119.91592 * 2 1 4 4 C 1.38122 * 120.11908 * 180.02562 * 3 2 1 5 5 C 1.38870 * 119.94760 * 0.02562 * 4 3 2 6 6 N 1.39821 * 120.08640 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99742 * 326.52738 * 6 5 4 8 8 O 1.21379 * 120.00252 * 5.17112 * 7 6 5 9 9 C 1.49347 * 119.99816 * 185.17900 * 7 6 5 10 10 O 1.21361 * 119.99827 * 359.69966 * 9 7 6 11 11 N 1.34777 * 120.00013 * 179.70018 * 9 7 6 12 12 C 1.46499 * 119.99978 * 354.34148 * 11 9 7 13 13 C 1.46498 * 119.99761 * 174.33728 * 11 9 7 14 14 C 1.50696 * 109.47062 * 90.00065 * 13 11 9 15 15 H 1.08001 * 119.99775 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00072 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47129 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47379 * 119.99879 * 18 16 14 21 21 H 1.48498 * 109.46683 * 239.99908 * 18 16 14 22 22 C 1.39114 * 119.83196 * 0.02562 * 5 4 3 23 23 F 1.35101 * 120.05926 * 179.97438 * 22 5 4 24 24 C 1.38274 * 119.91130 * 180.25769 * 2 1 3 25 25 H 1.09001 * 109.47282 * 89.99572 * 1 2 3 26 26 H 1.08996 * 109.46687 * 209.99798 * 1 2 3 27 27 H 1.08996 * 109.46807 * 329.99648 * 1 2 3 28 28 H 1.08002 * 119.94232 * 359.97438 * 3 2 1 29 29 H 1.07994 * 120.02490 * 179.97438 * 4 3 2 30 30 H 0.96995 * 120.00420 * 146.51715 * 6 5 4 31 31 H 1.08999 * 109.47420 * 84.06548 * 12 11 9 32 32 H 1.09000 * 109.46861 * 204.06234 * 12 11 9 33 33 H 1.09001 * 109.46852 * 324.06236 * 12 11 9 34 34 H 1.09002 * 109.46912 * 209.99849 * 13 11 9 35 35 H 1.08999 * 109.47374 * 329.99911 * 13 11 9 36 36 H 0.97000 * 120.00157 * 180.02562 * 17 16 14 37 37 H 1.07999 * 119.97794 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5780 1.2036 -0.0005 5 6 4.2755 0.0028 -0.0016 6 7 5.6737 0.0043 -0.0027 7 6 6.3460 0.9790 -0.6466 8 8 5.7414 1.9059 -1.1452 9 6 7.8349 0.9186 -0.7466 10 8 8.4398 -0.0054 -0.2434 11 7 8.5067 1.8901 -1.3957 12 6 7.7719 2.9381 -2.1085 13 6 9.9716 1.8982 -1.3882 14 6 10.4843 1.1068 -2.5637 15 1 9.7884 0.6444 -3.2481 16 6 11.8416 0.9739 -2.7660 17 7 12.6890 1.5373 -1.9329 18 14 12.4771 -0.0066 -4.2236 19 1 11.3289 -0.5354 -5.0029 20 1 13.3013 0.8733 -5.0906 21 1 13.3063 -1.1377 -3.7355 22 6 3.5796 -1.2018 -0.0027 23 9 4.2535 -2.3727 -0.0043 24 6 2.1966 -1.1985 -0.0054 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6545 2.1327 -0.0004 29 1 4.1151 2.1405 -0.0010 30 1 6.1599 -0.6959 0.4600 31 1 7.4904 3.7248 -1.4086 32 1 8.4046 3.3572 -2.8910 33 1 6.8743 2.5118 -2.5565 34 1 10.3296 2.9254 -1.4579 35 1 10.3328 1.4495 -0.4628 36 1 13.6439 1.4441 -2.0754 37 1 1.6548 -2.1328 -0.0100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271741663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:27 Heat of formation + Delta-G solvation = -96.706904 kcal Electronic energy + Delta-G solvation = -22992.396343 eV Core-core repulsion = 19263.016067 eV Total energy + Delta-G solvation = -3729.380276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.01836 -42.21124 -40.45193 -39.27604 -37.29738 -36.07415 -34.69530 -32.62014 -31.61592 -30.12935 -28.30246 -27.44011 -26.02107 -24.34517 -23.81284 -22.30236 -21.07998 -19.34750 -18.78109 -18.59211 -18.00318 -17.50596 -17.45947 -17.09164 -16.72005 -16.59952 -16.14141 -15.50061 -15.16119 -15.08616 -14.77254 -14.42696 -14.37450 -14.22959 -13.89841 -13.65667 -13.36621 -13.20617 -12.97952 -12.87605 -12.71188 -12.64708 -12.41460 -12.28724 -12.16603 -11.74847 -11.42072 -10.68055 -10.44022 -9.89027 -9.68220 -9.17998 -8.27442 -6.41863 -0.21220 0.15909 0.46026 1.18743 1.36718 1.38762 1.51098 2.03810 2.34037 2.49012 2.55088 3.03231 3.09286 3.19243 3.67424 3.89850 4.16437 4.24869 4.30142 4.41834 4.67028 4.68706 4.82001 4.90475 4.92897 4.94878 5.01694 5.06986 5.10702 5.25662 5.32737 5.39954 5.52522 5.65598 5.79569 5.88184 5.96226 6.28177 6.55766 6.64848 6.91493 7.28533 8.80536 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.003364 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.690498 B = 8321.596212 C = 8771.273332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.066 4.066 3 C -0.106 4.106 4 C -0.102 4.102 5 C 0.082 3.918 6 N -0.640 5.640 7 C 0.523 3.477 8 O -0.498 6.498 9 C 0.487 3.513 10 O -0.556 6.556 11 N -0.570 5.570 12 C 0.081 3.919 13 C 0.256 3.744 14 C -0.547 4.547 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.924 5.924 18 Si 0.968 3.032 19 H -0.270 1.270 20 H -0.268 1.268 21 H -0.279 1.279 22 C 0.062 3.938 23 F -0.146 7.146 24 C -0.136 4.136 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.161 0.839 29 H 0.144 0.856 30 H 0.425 0.575 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.012 0.988 36 H 0.270 0.730 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.767 -0.563 3.889 26.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.067 4.067 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.012 4.012 6 N -0.286 5.286 7 C 0.306 3.694 8 O -0.373 6.373 9 C 0.269 3.731 10 O -0.436 6.436 11 N -0.301 5.301 12 C -0.061 4.061 13 C 0.136 3.864 14 C -0.586 4.586 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.793 3.207 19 H -0.194 1.194 20 H -0.193 1.193 21 H -0.205 1.205 22 C 0.041 3.959 23 F -0.124 7.124 24 C -0.155 4.155 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.179 0.821 29 H 0.161 0.839 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.056 0.944 35 H 0.030 0.970 36 H 0.079 0.921 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -25.582 -0.350 3.790 25.864 hybrid contribution 1.612 -1.099 -0.314 1.976 sum -23.970 -1.450 3.476 24.264 Atomic orbital electron populations 1.20885 0.87633 1.04530 1.03753 1.20197 0.98311 0.91288 0.96855 1.21368 0.92359 0.99623 0.99120 1.21372 0.95346 0.96527 0.98986 1.18044 0.81846 0.94364 1.06984 1.42980 1.05078 1.28982 1.51609 1.20066 0.88097 0.82723 0.78560 1.90646 1.69415 1.32371 1.44883 1.20125 0.88055 0.83528 0.81383 1.90725 1.70092 1.33687 1.49084 1.48117 1.08637 1.25510 1.47796 1.22206 0.96811 0.90072 0.96990 1.19074 0.73489 0.97222 0.96656 1.21643 0.92310 1.33680 1.10944 0.92970 1.25806 0.96748 0.96514 0.99633 1.70031 1.03045 1.45025 1.38247 0.85353 0.78257 0.78399 0.78718 1.19438 1.19269 1.20477 1.17767 0.91240 0.79243 1.07643 1.91482 1.80771 1.45876 1.94313 1.21176 0.90100 1.01197 1.02981 0.89728 0.90071 0.89616 0.82097 0.83868 0.73690 0.90910 0.90860 0.89174 0.94400 0.97006 0.92146 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 71.24 0.71 -0.06 16 2 C -0.07 -0.93 5.88 -19.84 -0.12 -1.05 16 3 C -0.11 -1.72 9.69 22.26 0.22 -1.50 16 4 C -0.10 -2.36 8.71 22.39 0.20 -2.16 16 5 C 0.08 2.18 6.34 38.23 0.24 2.42 16 6 N -0.64 -19.71 5.22 -304.67 -1.59 -21.31 16 7 C 0.52 18.40 7.62 87.24 0.66 19.06 16 8 O -0.50 -16.74 10.59 -3.34 -0.04 -16.77 16 9 C 0.49 21.29 7.72 87.24 0.67 21.96 16 10 O -0.56 -27.89 16.12 -3.28 -0.05 -27.94 16 11 N -0.57 -25.48 2.86 -852.86 -2.44 -27.92 16 12 C 0.08 2.84 9.26 127.77 1.18 4.03 16 13 C 0.26 13.73 5.09 85.63 0.44 14.16 16 14 C -0.55 -31.56 9.39 25.60 0.24 -31.32 16 15 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 16 C 0.01 0.72 5.46 84.65 0.46 1.19 16 17 N -0.92 -54.96 13.29 21.45 0.28 -54.68 16 18 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C 0.06 1.50 7.31 22.49 0.16 1.66 16 23 F -0.15 -3.89 16.94 44.97 0.76 -3.13 16 24 C -0.14 -2.34 9.67 22.29 0.22 -2.12 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.08 0.41 8.09 -2.39 -0.02 0.39 16 27 H 0.08 0.39 8.08 -2.39 -0.02 0.37 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.14 3.56 6.08 -2.91 -0.02 3.55 16 30 H 0.42 12.91 8.11 -92.71 -0.75 12.16 16 31 H 0.07 2.24 8.13 -2.39 -0.02 2.22 16 32 H 0.07 2.54 8.03 -2.39 -0.02 2.52 16 33 H 0.09 3.03 5.85 -2.39 -0.01 3.02 16 34 H 0.04 2.03 8.07 -2.39 -0.02 2.01 16 35 H 0.01 0.71 7.51 -2.39 -0.02 0.69 16 36 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -69.69 326.34 4.61 -65.08 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.36 Total: 13.58 kcal Atomic # 6 Polarization: 20.98 SS G_CDS: 5.29 Total: 26.27 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.74 Total: -103.90 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.09 Total: -44.72 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.76 Total: -3.13 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.69 4.61 -65.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271741663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.628 kcal (2) G-P(sol) polarization free energy of solvation -69.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds