Wall clock time and date at job start Tue Mar 31 2020 07:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39841 * 125.44465 * 2 1 4 4 C 1.30233 * 110.10934 * 180.02562 * 3 2 1 5 5 C 1.45994 * 107.76444 * 359.97438 * 4 3 2 6 6 C 1.39790 * 133.89127 * 180.29946 * 5 4 3 7 7 C 1.38634 * 119.42141 * 180.17082 * 6 5 4 8 8 C 1.48296 * 119.89383 * 179.75067 * 7 6 5 9 9 C 1.39274 * 120.16130 * 309.72644 * 8 7 6 10 10 C 1.38022 * 119.94963 * 180.02562 * 9 8 7 11 11 C 1.38444 * 120.26337 * 359.97438 * 10 9 8 12 12 C 1.38118 * 120.32462 * 359.97438 * 11 10 9 13 13 C 1.38748 * 120.04779 * 0.02562 * 12 11 10 14 14 O 1.35673 * 120.12960 * 180.02562 * 13 12 11 15 15 C 1.34808 * 117.00229 * 354.40024 * 14 13 12 16 16 H 1.07997 * 119.99929 * 5.06617 * 15 14 13 17 17 C 1.38647 * 119.99997 * 185.06310 * 15 14 13 18 18 N 1.31564 * 120.00090 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00184 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.47030 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47297 * 119.99722 * 19 17 15 22 22 H 1.48499 * 109.47443 * 239.99958 * 19 17 15 23 23 C 1.40083 * 120.20782 * 359.47889 * 7 6 5 24 24 C 1.36309 * 120.69504 * 0.27114 * 23 7 6 25 25 C 1.37071 * 125.44693 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47814 * 269.96415 * 1 2 3 27 27 H 1.09004 * 109.47043 * 29.96601 * 1 2 3 28 28 H 1.09001 * 109.47382 * 149.95943 * 1 2 3 29 29 H 1.08000 * 126.12380 * 180.02562 * 4 3 2 30 30 H 1.07994 * 120.28569 * 359.90162 * 6 5 4 31 31 H 1.08000 * 120.02991 * 359.74270 * 9 8 7 32 32 H 1.07993 * 119.87176 * 179.97438 * 10 9 8 33 33 H 1.08001 * 119.83579 * 180.02562 * 11 10 9 34 34 H 1.07998 * 119.97515 * 180.02562 * 12 11 10 35 35 H 0.96999 * 120.00218 * 179.97438 * 18 17 15 36 36 H 1.08002 * 119.64966 * 180.25199 * 23 7 6 37 37 H 1.07998 * 119.92157 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2759 1.1393 0.0000 4 6 3.5319 0.7948 -0.0005 5 6 3.5938 -0.6638 -0.0003 6 6 4.6413 -1.5894 0.0046 7 6 4.3522 -2.9452 -0.0004 8 6 5.4554 -3.9362 -0.0009 9 6 6.4925 -3.8284 -0.9242 10 6 7.5168 -4.7535 -0.9210 11 6 7.5185 -5.7895 -0.0027 12 6 6.4961 -5.9064 0.9186 13 6 5.4598 -4.9838 0.9272 14 8 4.4549 -5.0968 1.8317 15 6 4.4599 -6.1915 2.6185 16 1 5.2837 -6.8880 2.5694 17 6 3.4073 -6.4230 3.4908 18 7 2.4040 -5.5741 3.5510 19 14 3.4145 -7.9394 4.5816 20 1 4.6466 -8.7279 4.3251 21 1 3.3798 -7.5241 6.0069 22 1 2.2227 -8.7722 4.2795 23 6 3.0212 -3.3820 0.0006 24 6 1.9946 -2.4853 0.0011 25 6 2.2599 -1.1167 -0.0005 26 1 -0.3635 -0.0006 1.0276 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3634 -0.8896 -0.5145 29 1 4.3766 1.4677 -0.0003 30 1 5.6669 -1.2511 0.0079 31 1 6.4930 -3.0242 -1.6450 32 1 8.3202 -4.6689 -1.6377 33 1 8.3237 -6.5093 -0.0061 34 1 6.5033 -6.7166 1.6327 35 1 1.6674 -5.7363 4.1610 36 1 2.8062 -4.4404 0.0008 37 1 0.9731 -2.8359 0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241439708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:45 Heat of formation + Delta-G solvation = 89.733559 kcal Electronic energy + Delta-G solvation = -22380.375053 eV Core-core repulsion = 19089.848667 eV Total energy + Delta-G solvation = -3290.526386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.111 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84137 -39.15811 -36.86152 -36.10647 -33.22576 -32.34060 -31.43675 -29.70826 -29.08317 -28.03965 -26.12468 -25.35829 -23.00683 -22.15731 -21.31901 -20.38505 -20.30083 -17.97688 -17.22060 -16.78558 -16.02513 -15.23735 -15.20155 -14.64241 -14.37197 -14.15769 -13.97970 -13.61632 -13.46192 -13.30635 -12.98170 -12.83433 -12.61209 -12.44495 -11.79437 -11.71623 -11.47335 -11.20004 -10.93101 -10.81881 -10.72500 -10.52836 -10.47723 -10.39532 -9.66409 -9.36634 -8.87969 -8.39639 -8.04419 -7.49941 -6.97068 -6.47885 -4.06040 1.40071 1.68909 2.32492 2.41629 2.65223 2.84851 3.10137 3.11871 3.16870 3.93306 4.25102 4.58086 4.67104 4.91699 5.07299 5.07910 5.21127 5.27949 5.38308 5.44053 5.49634 5.63699 5.67359 5.80624 5.85427 6.04566 6.06332 6.21897 6.33079 6.45815 6.66272 6.73100 6.76785 6.96814 7.02338 7.12292 7.18140 7.27825 7.35237 7.41183 7.50071 7.79171 7.89825 7.96207 8.97427 9.66809 10.68764 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.005509 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.720193 B = 5081.454728 C = 6918.962716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.416 5.416 3 N -0.267 5.267 4 C 0.070 3.930 5 C -0.183 4.183 6 C -0.046 4.046 7 C -0.044 4.044 8 C -0.127 4.127 9 C -0.062 4.062 10 C -0.214 4.214 11 C -0.072 4.072 12 C -0.234 4.234 13 C 0.163 3.837 14 O -0.165 6.165 15 C -0.394 4.394 16 H 0.092 0.908 17 C 0.042 3.958 18 N -0.855 5.855 19 Si 0.938 3.062 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.021 4.021 24 C -0.143 4.143 25 C 0.123 3.877 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.192 0.808 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.128 0.872 35 H 0.269 0.731 36 H 0.133 0.867 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 6.046 -7.322 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.206 5.206 3 N -0.079 5.079 4 C -0.127 4.127 5 C -0.190 4.190 6 C -0.066 4.066 7 C -0.046 4.046 8 C -0.129 4.129 9 C -0.080 4.080 10 C -0.233 4.233 11 C -0.090 4.090 12 C -0.253 4.253 13 C 0.108 3.892 14 O -0.068 6.068 15 C -0.470 4.470 16 H 0.109 0.891 17 C -0.163 4.163 18 N -0.490 5.490 19 Si 0.763 3.237 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.042 4.042 24 C -0.165 4.165 25 C 0.010 3.990 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.209 0.791 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.151 0.849 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.565 7.210 -7.117 10.147 hybrid contribution 0.514 -1.544 0.765 1.798 sum -0.051 5.666 -6.352 8.512 Atomic orbital electron populations 1.21644 0.74744 1.03627 1.02734 1.47996 1.05456 1.01217 1.65924 1.76422 1.02757 1.09388 1.19328 1.24959 0.94465 0.93267 1.00021 1.19726 0.93019 0.92931 1.13366 1.20556 0.97248 0.90937 0.97871 1.18358 0.92527 0.91676 1.02008 1.17789 0.97543 0.97812 0.99708 1.20726 0.92754 0.97921 0.96649 1.20526 1.00816 0.98808 1.03178 1.20811 0.96925 0.96848 0.94423 1.21117 0.97001 1.03207 1.03956 1.19336 0.88763 0.92495 0.88569 1.83986 1.40677 1.41304 1.40807 1.21377 1.07486 1.00173 1.17941 0.89071 1.25247 0.94589 0.98845 0.97598 1.70057 1.08384 1.34846 1.35681 0.85689 0.78694 0.79977 0.79339 1.19116 1.20210 1.20182 1.20832 0.91055 0.99854 0.92462 1.19630 0.99850 0.88462 1.08528 1.18819 0.90526 0.89316 1.00302 0.91588 0.90020 0.89992 0.79131 0.85804 0.86855 0.87533 0.87531 0.85445 0.92141 0.84924 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.33 11.39 59.85 0.68 2.01 16 2 N -0.42 -6.74 4.05 -65.41 -0.26 -7.00 16 3 N -0.27 -4.32 12.40 31.88 0.40 -3.92 16 4 C 0.07 1.05 12.29 -15.12 -0.19 0.86 16 5 C -0.18 -3.19 6.35 -105.22 -0.67 -3.86 16 6 C -0.05 -0.81 9.56 -38.86 -0.37 -1.18 16 7 C -0.04 -0.88 5.27 -104.92 -0.55 -1.43 16 8 C -0.13 -2.61 5.48 -104.73 -0.57 -3.19 16 9 C -0.06 -1.09 9.50 -39.28 -0.37 -1.47 16 10 C -0.21 -3.59 10.03 -39.58 -0.40 -3.99 16 11 C -0.07 -1.28 10.03 -39.55 -0.40 -1.68 16 12 C -0.23 -4.92 9.16 -39.44 -0.36 -5.28 16 13 C 0.16 3.79 6.55 -38.75 -0.25 3.54 16 14 O -0.17 -4.44 8.09 0.35 0.00 -4.44 16 15 C -0.39 -10.54 9.49 30.88 0.29 -10.24 16 16 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 17 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 18 N -0.86 -24.06 13.67 55.48 0.76 -23.30 16 19 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 C -0.02 -0.44 8.69 -39.58 -0.34 -0.78 16 24 C -0.14 -2.63 9.92 -39.84 -0.40 -3.03 16 25 C 0.12 2.22 6.87 -84.09 -0.58 1.65 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 30 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 31 H 0.11 1.69 8.04 -52.49 -0.42 1.27 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.13 2.87 7.66 -52.49 -0.40 2.47 16 37 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -31.36 324.69 -7.72 -39.08 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.91 Total: 6.77 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -4.57 Total: -27.05 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.89 Total: -34.23 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: 0.00 Total: -4.44 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.36 -7.72 -39.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241439708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.810 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds