Wall clock time and date at job start Tue Mar 31 2020 07:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39841 * 125.44465 * 2 1 4 4 C 1.30233 * 110.10934 * 180.02562 * 3 2 1 5 5 C 1.45994 * 107.76444 * 359.97438 * 4 3 2 6 6 C 1.39790 * 133.89127 * 180.29946 * 5 4 3 7 7 C 1.38634 * 119.42141 * 180.17082 * 6 5 4 8 8 C 1.48296 * 119.89383 * 179.75067 * 7 6 5 9 9 C 1.39274 * 120.16130 * 309.72644 * 8 7 6 10 10 C 1.38022 * 119.94963 * 180.02562 * 9 8 7 11 11 C 1.38444 * 120.26337 * 359.97438 * 10 9 8 12 12 C 1.38118 * 120.32462 * 359.97438 * 11 10 9 13 13 C 1.38748 * 120.04779 * 0.02562 * 12 11 10 14 14 O 1.35673 * 120.12960 * 180.02562 * 13 12 11 15 15 C 1.34808 * 117.00229 * 354.40024 * 14 13 12 16 16 H 1.07997 * 119.99929 * 5.06617 * 15 14 13 17 17 C 1.38647 * 119.99997 * 185.06310 * 15 14 13 18 18 N 1.31564 * 120.00090 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00184 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.47030 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47297 * 119.99722 * 19 17 15 22 22 H 1.48499 * 109.47443 * 239.99958 * 19 17 15 23 23 C 1.40083 * 120.20782 * 359.47889 * 7 6 5 24 24 C 1.36309 * 120.69504 * 0.27114 * 23 7 6 25 25 C 1.37071 * 125.44693 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47814 * 269.96415 * 1 2 3 27 27 H 1.09004 * 109.47043 * 29.96601 * 1 2 3 28 28 H 1.09001 * 109.47382 * 149.95943 * 1 2 3 29 29 H 1.08000 * 126.12380 * 180.02562 * 4 3 2 30 30 H 1.07994 * 120.28569 * 359.90162 * 6 5 4 31 31 H 1.08000 * 120.02991 * 359.74270 * 9 8 7 32 32 H 1.07993 * 119.87176 * 179.97438 * 10 9 8 33 33 H 1.08001 * 119.83579 * 180.02562 * 11 10 9 34 34 H 1.07998 * 119.97515 * 180.02562 * 12 11 10 35 35 H 0.96999 * 120.00218 * 179.97438 * 18 17 15 36 36 H 1.08002 * 119.64966 * 180.25199 * 23 7 6 37 37 H 1.07998 * 119.92157 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2759 1.1393 0.0000 4 6 3.5319 0.7948 -0.0005 5 6 3.5938 -0.6638 -0.0003 6 6 4.6413 -1.5894 0.0046 7 6 4.3522 -2.9452 -0.0004 8 6 5.4554 -3.9362 -0.0009 9 6 6.4925 -3.8284 -0.9242 10 6 7.5168 -4.7535 -0.9210 11 6 7.5185 -5.7895 -0.0027 12 6 6.4961 -5.9064 0.9186 13 6 5.4598 -4.9838 0.9272 14 8 4.4549 -5.0968 1.8317 15 6 4.4599 -6.1915 2.6185 16 1 5.2837 -6.8880 2.5694 17 6 3.4073 -6.4230 3.4908 18 7 2.4040 -5.5741 3.5510 19 14 3.4145 -7.9394 4.5816 20 1 4.6466 -8.7279 4.3251 21 1 3.3798 -7.5241 6.0069 22 1 2.2227 -8.7722 4.2795 23 6 3.0212 -3.3820 0.0006 24 6 1.9946 -2.4853 0.0011 25 6 2.2599 -1.1167 -0.0005 26 1 -0.3635 -0.0006 1.0276 27 1 -0.3633 0.8903 -0.5133 28 1 -0.3634 -0.8896 -0.5145 29 1 4.3766 1.4677 -0.0003 30 1 5.6669 -1.2511 0.0079 31 1 6.4930 -3.0242 -1.6450 32 1 8.3202 -4.6689 -1.6377 33 1 8.3237 -6.5093 -0.0061 34 1 6.5033 -6.7166 1.6327 35 1 1.6674 -5.7363 4.1610 36 1 2.8062 -4.4404 0.0008 37 1 0.9731 -2.8359 0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241439708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:44 Heat of formation + Delta-G solvation = 72.277343 kcal Electronic energy + Delta-G solvation = -22381.132011 eV Core-core repulsion = 19089.848667 eV Total energy + Delta-G solvation = -3291.283344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14412 -40.76717 -38.41715 -37.61260 -34.42053 -34.24565 -32.87950 -31.09155 -30.61043 -29.45938 -27.41590 -27.13556 -24.40929 -23.61661 -22.89706 -21.75916 -21.61055 -19.74654 -18.86169 -18.05689 -17.52704 -16.70907 -16.43302 -16.31145 -16.00347 -15.60385 -15.29872 -15.15166 -15.05728 -14.68263 -14.37684 -14.29527 -13.87665 -13.53203 -13.50517 -13.19823 -13.02458 -12.68747 -12.46157 -12.31467 -12.21973 -12.10783 -11.93053 -11.76384 -11.11465 -10.95293 -10.77159 -9.84114 -9.47852 -9.03113 -8.45835 -8.40879 -6.07460 0.03619 0.21681 0.78479 0.93338 1.35910 1.43311 1.49415 1.52426 1.59048 2.18722 2.78641 2.93904 3.25410 3.53579 3.56557 3.65598 3.83876 3.93412 4.22737 4.30775 4.32824 4.39241 4.44808 4.46050 4.60485 4.63966 4.72064 4.80345 4.86550 5.05616 5.12753 5.19282 5.25463 5.45752 5.55431 5.61361 5.69245 5.81793 5.86955 5.92251 6.07477 6.13213 6.30237 6.65002 7.03030 7.85453 8.79587 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.005509 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.720193 B = 5081.454728 C = 6918.962716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.421 5.421 3 N -0.279 5.279 4 C 0.084 3.916 5 C -0.197 4.197 6 C -0.033 4.033 7 C -0.071 4.071 8 C -0.132 4.132 9 C -0.061 4.061 10 C -0.190 4.190 11 C -0.072 4.072 12 C -0.249 4.249 13 C 0.122 3.878 14 O -0.211 6.211 15 C -0.412 4.412 16 H 0.098 0.902 17 C -0.017 4.017 18 N -0.910 5.910 19 Si 1.011 2.989 20 H -0.253 1.253 21 H -0.273 1.273 22 H -0.270 1.270 23 C -0.043 4.043 24 C -0.148 4.148 25 C 0.110 3.890 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.237 0.763 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.117 0.883 35 H 0.269 0.731 36 H 0.101 0.899 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 7.272 -8.813 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.211 5.211 3 N -0.091 5.091 4 C -0.113 4.113 5 C -0.205 4.205 6 C -0.053 4.053 7 C -0.073 4.073 8 C -0.133 4.133 9 C -0.079 4.079 10 C -0.208 4.208 11 C -0.090 4.090 12 C -0.269 4.269 13 C 0.071 3.929 14 O -0.116 6.116 15 C -0.488 4.488 16 H 0.115 0.885 17 C -0.215 4.215 18 N -0.547 5.547 19 Si 0.831 3.169 20 H -0.177 1.177 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.064 4.064 24 C -0.170 4.170 25 C -0.004 4.004 26 H 0.089 0.911 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.253 0.747 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.716 8.449 -8.651 12.213 hybrid contribution -0.024 -1.759 0.977 2.012 sum 1.692 6.690 -7.673 10.320 Atomic orbital electron populations 1.21975 0.72652 1.05390 1.03652 1.48375 1.06800 1.00529 1.65368 1.76423 1.03373 1.09473 1.19821 1.25651 0.95240 0.92355 0.98045 1.20102 0.92680 0.94482 1.13248 1.20770 0.98744 0.89820 0.96010 1.18473 0.92048 0.92848 1.03938 1.18162 0.98542 0.97134 0.99512 1.21170 0.91721 0.99002 0.96006 1.21104 1.00813 0.96715 1.02217 1.21217 0.96578 0.97910 0.93310 1.21252 0.97804 1.02764 1.05033 1.19932 0.89055 0.94447 0.89457 1.83972 1.42866 1.41988 1.42797 1.21798 1.07947 1.00741 1.18322 0.88502 1.26392 0.94011 1.02085 0.99021 1.70205 1.09572 1.37442 1.37515 0.84631 0.79200 0.76008 0.77049 1.17677 1.19781 1.19561 1.20676 0.92446 0.98662 0.94567 1.19673 0.99928 0.88978 1.08430 1.18945 0.91764 0.89464 1.00244 0.91076 0.87842 0.88741 0.74730 0.82954 0.83449 0.83050 0.84007 0.86559 0.92220 0.88064 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.30 11.39 127.77 1.46 3.76 16 2 N -0.42 -13.19 4.05 -360.86 -1.46 -14.65 16 3 N -0.28 -8.42 12.40 -53.05 -0.66 -9.07 16 4 C 0.08 2.27 12.29 86.94 1.07 3.33 16 5 C -0.20 -6.62 6.35 -20.25 -0.13 -6.75 16 6 C -0.03 -1.14 9.56 22.74 0.22 -0.92 16 7 C -0.07 -2.92 5.27 -20.06 -0.11 -3.02 16 8 C -0.13 -5.47 5.48 -19.93 -0.11 -5.58 16 9 C -0.06 -1.97 9.50 22.47 0.21 -1.75 16 10 C -0.19 -5.55 10.03 22.27 0.22 -5.33 16 11 C -0.07 -2.38 10.03 22.29 0.22 -2.16 16 12 C -0.25 -10.63 9.16 22.36 0.20 -10.42 16 13 C 0.12 5.92 6.55 22.81 0.15 6.07 16 14 O -0.21 -12.15 8.09 -21.67 -0.18 -12.33 16 15 C -0.41 -23.43 9.49 67.92 0.64 -22.79 16 16 H 0.10 5.13 5.21 -2.91 -0.02 5.11 16 17 C -0.02 -0.93 5.49 84.83 0.47 -0.47 16 18 N -0.91 -54.60 13.67 21.61 0.30 -54.30 16 19 Si 1.01 42.68 29.55 68.60 2.03 44.70 16 20 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 C -0.04 -1.86 8.69 22.27 0.19 -1.67 16 24 C -0.15 -5.74 9.92 22.10 0.22 -5.52 16 25 C 0.11 3.96 6.87 39.25 0.27 4.23 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 1.83 8.13 -2.39 -0.02 1.81 16 29 H 0.24 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.15 4.18 8.04 -2.91 -0.02 4.16 16 31 H 0.15 3.73 8.04 -2.91 -0.02 3.71 16 32 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.12 5.09 5.64 -2.91 -0.02 5.07 16 35 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.10 4.93 7.66 -2.91 -0.02 4.90 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -73.65 324.69 6.33 -67.32 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 1.10 Total: 27.31 kcal Atomic # 6 Polarization: -54.18 SS G_CDS: 5.20 Total: -48.98 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -1.82 Total: -78.03 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.18 Total: -12.33 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.65 6.33 -67.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241439708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.597 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds