Wall clock time and date at job start Tue Mar 31 2020 06:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 O 1.42906 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.35792 * 116.99641 * 179.97438 * 5 4 3 7 7 C 1.38856 * 119.92227 * 359.73420 * 6 5 4 8 8 C 1.37759 * 120.15820 * 179.76099 * 7 6 5 9 9 C 1.39803 * 119.99390 * 0.50914 * 8 7 6 10 10 C 1.47417 * 120.07622 * 179.76882 * 9 8 7 11 11 O 1.21540 * 119.99272 * 179.97438 * 10 9 8 12 12 O 1.34766 * 120.00297 * 359.97309 * 10 9 8 13 13 C 1.34859 * 116.99765 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00523 * 359.97438 * 13 12 10 15 15 C 1.38794 * 119.99785 * 180.02562 * 13 12 10 16 16 N 1.31429 * 120.00118 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00181 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46956 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47382 * 119.99832 * 17 15 13 20 20 H 1.48498 * 109.47133 * 240.00013 * 17 15 13 21 21 C 1.39820 * 119.84046 * 359.74024 * 9 8 7 22 22 C 1.38112 * 119.84598 * 0.02562 * 21 9 8 23 23 O 1.35993 * 120.00148 * 180.02562 * 22 21 9 24 24 C 1.42900 * 117.00049 * 359.97404 * 23 22 21 25 25 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 27 27 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 28 28 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 29 29 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 30 30 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 31 31 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 32 32 H 1.09000 * 109.47050 * 299.99699 * 4 3 2 33 33 H 1.09001 * 109.46801 * 59.99811 * 4 3 2 34 34 H 1.08007 * 119.92292 * 359.97438 * 7 6 5 35 35 H 1.07997 * 120.00440 * 180.25121 * 8 7 6 36 36 H 0.97006 * 119.99863 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.08111 * 180.02562 * 21 9 8 38 38 H 1.09000 * 109.47278 * 300.00226 * 24 23 22 39 39 H 1.08999 * 109.47399 * 60.00139 * 24 23 22 40 40 H 1.09000 * 109.47686 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.3927 2.9676 -0.0013 7 6 6.2370 1.8652 0.0047 8 6 7.6034 2.0399 -0.0003 9 6 8.1431 3.3296 -0.0008 10 6 9.6050 3.5187 -0.0010 11 8 10.0726 4.6406 -0.0019 12 8 10.4231 2.4477 -0.0002 13 6 11.7496 2.6906 0.0001 14 1 12.1124 3.7079 -0.0007 15 6 12.6487 1.6332 0.0004 16 7 12.2072 0.3953 -0.0001 17 14 14.4862 1.9695 0.0001 18 1 14.7210 3.4358 -0.0011 19 1 15.0993 1.3706 1.2127 20 1 15.0990 1.3696 -1.2123 21 6 7.2928 4.4396 -0.0016 22 6 5.9238 4.2567 -0.0015 23 8 5.0939 5.3341 -0.0028 24 6 5.7066 6.6250 -0.0038 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 0.8891 33 1 3.9330 0.9286 -0.8909 34 1 5.8214 0.8683 0.0099 35 1 8.2578 1.1808 0.0004 36 1 12.8357 -0.3437 0.0005 37 1 7.7055 5.4376 -0.0024 38 1 6.3263 6.7338 0.8863 39 1 6.3270 6.7321 -0.8936 40 1 4.9341 7.3940 -0.0044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058050054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:38 Heat of formation + Delta-G solvation = -142.266878 kcal Electronic energy + Delta-G solvation = -22869.979313 eV Core-core repulsion = 19229.790963 eV Total energy + Delta-G solvation = -3640.188351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45620 -38.94991 -38.49264 -36.60315 -35.35039 -34.98756 -32.21293 -30.57497 -30.14612 -29.06572 -27.27870 -25.49545 -24.32447 -22.98686 -21.98913 -21.12044 -20.23668 -18.41455 -17.81833 -17.34945 -16.53206 -16.35519 -15.85278 -15.60849 -14.82099 -14.77180 -14.63505 -14.46915 -14.40617 -14.34916 -13.70086 -13.12269 -12.94943 -12.89535 -12.35486 -12.12198 -12.04013 -11.70186 -11.55928 -11.44783 -11.32500 -11.14460 -11.13774 -10.88669 -10.86184 -10.69355 -10.43391 -10.36561 -9.86017 -9.11352 -8.63802 -8.55283 -7.64892 -6.48679 -4.11075 1.20830 1.59576 3.09166 3.12664 3.16691 3.24228 3.37727 3.43987 3.90050 4.29779 4.50307 4.60759 4.61751 4.76267 4.98714 5.00655 5.05611 5.12360 5.19184 5.25766 5.29028 5.32558 5.46011 5.49675 5.49813 5.58924 5.62631 5.65687 5.79539 5.85178 5.92354 5.94862 6.01384 6.46550 6.67957 6.82058 6.97645 7.14840 7.35230 7.68058 7.89427 8.67260 9.00374 9.80416 10.69114 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.003258 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.529764 B = 8592.790125 C =10057.966803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.055 3.945 5 O -0.305 6.305 6 C 0.114 3.886 7 C -0.186 4.186 8 C -0.064 4.064 9 C -0.087 4.087 10 C 0.435 3.565 11 O -0.556 6.556 12 O -0.204 6.204 13 C -0.373 4.373 14 H 0.098 0.902 15 C 0.041 3.959 16 N -0.859 5.859 17 Si 0.945 3.055 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.123 4.123 22 C 0.083 3.917 23 O -0.309 6.309 24 C 0.025 3.975 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.271 0.729 37 H 0.146 0.854 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.177 0.720 0.004 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.020 4.020 5 O -0.218 6.218 6 C 0.068 3.932 7 C -0.204 4.204 8 C -0.083 4.083 9 C -0.088 4.088 10 C 0.284 3.716 11 O -0.455 6.455 12 O -0.111 6.111 13 C -0.450 4.450 14 H 0.116 0.884 15 C -0.164 4.164 16 N -0.495 5.495 17 Si 0.769 3.231 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.142 4.142 22 C 0.038 3.962 23 O -0.223 6.223 24 C -0.070 4.070 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.165 0.835 36 H 0.080 0.920 37 H 0.164 0.836 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.319 0.910 0.003 19.341 hybrid contribution 1.281 0.021 -0.001 1.281 sum -18.039 0.931 0.002 18.063 Atomic orbital electron populations 1.21750 0.95315 1.01767 1.02043 1.21443 0.96299 0.95740 1.02528 1.21557 0.92684 0.97581 1.03733 1.22867 0.95252 0.82289 1.01596 1.86071 1.18371 1.28628 1.88777 1.18359 0.82775 0.91113 1.00946 1.21013 0.93780 0.97328 1.08311 1.21352 0.94208 0.97425 0.95292 1.19077 0.91269 0.93260 1.05236 1.20599 0.87118 0.84040 0.79843 1.90619 1.77437 1.25605 1.51840 1.83896 1.18727 1.33630 1.74842 1.21363 0.77168 0.95160 1.51260 0.88412 1.25384 1.00551 0.94270 0.96179 1.69989 1.35591 0.98268 1.45691 0.85582 0.80207 0.79131 0.78178 1.18855 1.20084 1.20091 1.21098 0.90269 1.00303 1.02497 1.17932 0.88469 0.85350 1.04461 1.86120 1.33605 1.12957 1.89621 1.23058 0.99696 0.82524 1.01745 0.92546 0.92589 0.92584 0.91605 0.91607 0.90846 0.90852 0.91934 0.91937 0.84489 0.83507 0.91961 0.83619 0.92564 0.92558 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -1.01 5.58 -26.73 -0.15 -1.16 16 4 C 0.06 0.58 4.74 37.16 0.18 0.76 16 5 O -0.30 -4.43 9.90 -33.75 -0.33 -4.77 16 6 C 0.11 1.84 6.71 -38.91 -0.26 1.58 16 7 C -0.19 -2.89 9.01 -39.53 -0.36 -3.24 16 8 C -0.06 -1.20 9.61 -39.17 -0.38 -1.58 16 9 C -0.09 -1.83 5.87 -104.98 -0.62 -2.45 16 10 C 0.44 11.31 7.83 34.47 0.27 11.58 16 11 O -0.56 -15.41 15.59 -19.30 -0.30 -15.71 16 12 O -0.20 -5.88 8.98 -21.75 -0.20 -6.08 16 13 C -0.37 -11.02 9.65 30.94 0.30 -10.73 16 14 H 0.10 2.91 6.86 -52.49 -0.36 2.55 16 15 C 0.04 1.14 5.50 -17.52 -0.10 1.04 16 16 N -0.86 -24.68 13.67 55.49 0.76 -23.92 16 17 Si 0.94 21.06 29.55 -169.99 -5.02 16.03 16 18 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C -0.12 -2.28 8.58 -39.04 -0.33 -2.61 16 22 C 0.08 1.41 6.69 -39.18 -0.26 1.15 16 23 O -0.31 -4.81 10.28 -34.38 -0.35 -5.17 16 24 C 0.03 0.29 9.81 101.05 0.99 1.28 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.61 7.64 -51.93 -0.40 0.21 16 33 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 34 H 0.14 1.70 6.27 -52.48 -0.33 1.37 16 35 H 0.15 2.85 7.60 -52.49 -0.40 2.45 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.15 2.61 5.87 -52.49 -0.31 2.30 16 38 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 39 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -33.67 345.37 -6.25 -39.92 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.50 Total: 0.43 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.51 Total: -5.94 kcal Atomic # 7 Polarization: -24.68 SS G_CDS: 0.76 Total: -23.92 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.18 Total: -31.73 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.67 -6.25 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058050054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.347 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds