Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 O 1.42906 * 109.46748 * 179.97438 * 4 3 2 6 6 C 1.35792 * 116.99641 * 179.97438 * 5 4 3 7 7 C 1.38856 * 119.92227 * 359.73420 * 6 5 4 8 8 C 1.37759 * 120.15820 * 179.76099 * 7 6 5 9 9 C 1.39803 * 119.99390 * 0.50914 * 8 7 6 10 10 C 1.47417 * 120.07622 * 179.76882 * 9 8 7 11 11 O 1.21540 * 119.99272 * 179.97438 * 10 9 8 12 12 O 1.34766 * 120.00297 * 359.97309 * 10 9 8 13 13 C 1.34859 * 116.99765 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00523 * 359.97438 * 13 12 10 15 15 C 1.38794 * 119.99785 * 180.02562 * 13 12 10 16 16 N 1.31429 * 120.00118 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00181 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46956 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47382 * 119.99832 * 17 15 13 20 20 H 1.48498 * 109.47133 * 240.00013 * 17 15 13 21 21 C 1.39820 * 119.84046 * 359.74024 * 9 8 7 22 22 C 1.38112 * 119.84598 * 0.02562 * 21 9 8 23 23 O 1.35993 * 120.00148 * 180.02562 * 22 21 9 24 24 C 1.42900 * 117.00049 * 359.97404 * 23 22 21 25 25 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 27 27 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 28 28 H 1.08993 * 109.46765 * 239.99415 * 2 1 3 29 29 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 30 30 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 31 31 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 32 32 H 1.09000 * 109.47050 * 299.99699 * 4 3 2 33 33 H 1.09001 * 109.46801 * 59.99811 * 4 3 2 34 34 H 1.08007 * 119.92292 * 359.97438 * 7 6 5 35 35 H 1.07997 * 120.00440 * 180.25121 * 8 7 6 36 36 H 0.97006 * 119.99863 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.08111 * 180.02562 * 21 9 8 38 38 H 1.09000 * 109.47278 * 300.00226 * 24 23 22 39 39 H 1.08999 * 109.47399 * 60.00139 * 24 23 22 40 40 H 1.09000 * 109.47686 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0464 2.7897 -0.0012 6 6 5.3927 2.9676 -0.0013 7 6 6.2370 1.8652 0.0047 8 6 7.6034 2.0399 -0.0003 9 6 8.1431 3.3296 -0.0008 10 6 9.6050 3.5187 -0.0010 11 8 10.0726 4.6406 -0.0019 12 8 10.4231 2.4477 -0.0002 13 6 11.7496 2.6906 0.0001 14 1 12.1124 3.7079 -0.0007 15 6 12.6487 1.6332 0.0004 16 7 12.2072 0.3953 -0.0001 17 14 14.4862 1.9695 0.0001 18 1 14.7210 3.4358 -0.0011 19 1 15.0993 1.3706 1.2127 20 1 15.0990 1.3696 -1.2123 21 6 7.2928 4.4396 -0.0016 22 6 5.9238 4.2567 -0.0015 23 8 5.0939 5.3341 -0.0028 24 6 5.7066 6.6250 -0.0038 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 0.8891 33 1 3.9330 0.9286 -0.8909 34 1 5.8214 0.8683 0.0099 35 1 8.2578 1.1808 0.0004 36 1 12.8357 -0.3437 0.0005 37 1 7.7055 5.4376 -0.0024 38 1 6.3263 6.7338 0.8863 39 1 6.3270 6.7321 -0.8936 40 1 4.9341 7.3940 -0.0044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058050054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = -162.094703 kcal Electronic energy + Delta-G solvation = -22870.839112 eV Core-core repulsion = 19229.790963 eV Total energy + Delta-G solvation = -3641.048150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82485 -40.86329 -39.66617 -38.02138 -37.14124 -35.95585 -34.34399 -31.78777 -31.51718 -30.01066 -28.48325 -27.43780 -25.36123 -24.46151 -23.07934 -22.07860 -21.73212 -19.93652 -19.78961 -18.86068 -17.80277 -17.46730 -17.37922 -16.71997 -16.71685 -16.47735 -16.18775 -15.83731 -15.53978 -15.45389 -14.81775 -14.38909 -14.18042 -13.90185 -13.74049 -13.53632 -13.29573 -13.24894 -12.90465 -12.53357 -12.45189 -12.38175 -12.18796 -12.07220 -12.01526 -11.98031 -11.83995 -11.83315 -11.41428 -11.19109 -10.72627 -9.93753 -9.00397 -8.58529 -6.35077 -0.31365 0.20478 1.34001 1.34872 1.52573 1.71640 2.01461 2.09058 2.22900 2.63303 2.67153 3.00668 3.64361 3.86848 3.94853 3.95875 4.04336 4.14098 4.20677 4.24478 4.35550 4.38352 4.44124 4.47187 4.51985 4.66134 4.70900 4.89405 4.93452 4.97158 5.04641 5.09316 5.19654 5.26686 5.34734 5.35604 5.41703 5.47509 5.78489 5.99008 6.45113 6.56833 6.86138 7.69210 8.62141 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.003258 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.529764 B = 8592.790125 C =10057.966803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.113 4.113 4 C 0.043 3.957 5 O -0.311 6.311 6 C 0.130 3.870 7 C -0.171 4.171 8 C -0.063 4.063 9 C -0.123 4.123 10 C 0.436 3.564 11 O -0.583 6.583 12 O -0.229 6.229 13 C -0.420 4.420 14 H 0.082 0.918 15 C -0.002 4.002 16 N -0.895 5.895 17 Si 1.020 2.980 18 H -0.265 1.265 19 H -0.258 1.258 20 H -0.258 1.258 21 C -0.120 4.120 22 C 0.082 3.918 23 O -0.315 6.315 24 C 0.016 3.984 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.134 0.866 36 H 0.281 0.719 37 H 0.146 0.854 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.721 0.093 0.008 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.151 4.151 4 C -0.032 4.032 5 O -0.224 6.224 6 C 0.083 3.917 7 C -0.190 4.190 8 C -0.082 4.082 9 C -0.124 4.124 10 C 0.286 3.714 11 O -0.483 6.483 12 O -0.136 6.136 13 C -0.495 4.495 14 H 0.100 0.900 15 C -0.203 4.203 16 N -0.531 5.531 17 Si 0.838 3.162 18 H -0.190 1.190 19 H -0.182 1.182 20 H -0.182 1.182 21 C -0.139 4.139 22 C 0.037 3.963 23 O -0.229 6.229 24 C -0.078 4.078 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.192 0.808 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.163 0.837 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.909 0.277 0.006 20.910 hybrid contribution 1.442 0.266 -0.002 1.466 sum -19.467 0.544 0.004 19.475 Atomic orbital electron populations 1.21758 0.94813 1.02298 1.02089 1.21438 0.96706 0.94519 1.03056 1.21560 0.91222 0.98758 1.03536 1.23272 0.96493 0.80494 1.02893 1.86098 1.16993 1.31375 1.87959 1.18499 0.83812 0.90845 0.98526 1.21238 0.92039 0.99055 1.06646 1.21272 0.95572 0.95926 0.95388 1.18907 0.88481 0.95336 1.09705 1.21538 0.88946 0.83236 0.77636 1.90566 1.78511 1.26429 1.52812 1.83915 1.18856 1.34748 1.76129 1.21540 0.78068 0.95247 1.54668 0.89994 1.26575 1.05564 0.93632 0.94508 1.70060 1.37879 0.99265 1.45937 0.84544 0.73251 0.79006 0.79385 1.18956 1.18221 1.18241 1.21038 0.90869 0.99548 1.02471 1.17998 0.87866 0.86582 1.03890 1.86126 1.33743 1.13779 1.89275 1.23369 1.01067 0.81515 1.01866 0.91803 0.92573 0.92569 0.91091 0.91088 0.91082 0.91092 0.90576 0.90589 0.80764 0.84762 0.90936 0.83662 0.92462 0.92458 0.85049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.32 5.93 30.60 0.18 -1.14 16 3 C -0.11 -1.64 5.58 30.60 0.17 -1.47 16 4 C 0.04 0.77 4.74 71.98 0.34 1.11 16 5 O -0.31 -8.17 9.90 -77.20 -0.76 -8.94 16 6 C 0.13 3.92 6.71 22.71 0.15 4.07 16 7 C -0.17 -4.99 9.01 22.30 0.20 -4.79 16 8 C -0.06 -2.36 9.61 22.53 0.22 -2.15 16 9 C -0.12 -5.35 5.87 -20.10 -0.12 -5.47 16 10 C 0.44 23.87 7.83 70.24 0.55 24.42 16 11 O -0.58 -34.03 15.59 19.71 0.31 -33.73 16 12 O -0.23 -13.90 8.98 10.94 0.10 -13.80 16 13 C -0.42 -25.94 9.65 67.95 0.66 -25.29 16 14 H 0.08 5.16 6.86 -2.91 -0.02 5.14 16 15 C 0.00 -0.10 5.50 84.89 0.47 0.37 16 16 N -0.89 -52.35 13.67 21.63 0.30 -52.05 16 17 Si 1.02 43.41 29.55 68.60 2.03 45.44 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 C -0.12 -4.51 8.58 22.62 0.19 -4.31 16 22 C 0.08 2.71 6.69 22.53 0.15 2.86 16 23 O -0.32 -9.28 10.28 -79.45 -0.82 -10.09 16 24 C 0.02 0.35 9.81 113.37 1.11 1.47 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.20 7.64 -2.39 -0.02 1.18 16 33 H 0.08 1.20 7.67 -2.39 -0.02 1.18 16 34 H 0.18 3.70 6.27 -2.91 -0.02 3.68 16 35 H 0.13 5.37 7.60 -2.91 -0.02 5.35 16 36 H 0.28 14.77 8.31 -92.70 -0.77 14.00 16 37 H 0.15 5.33 5.87 -2.91 -0.02 5.32 16 38 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 39 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 40 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -75.61 345.37 7.18 -68.43 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 1.04 Total: 15.87 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.99 Total: -11.13 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.30 Total: -52.05 kcal Atomic # 8 Polarization: -65.38 SS G_CDS: -1.18 Total: -66.56 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -75.61 7.18 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058050054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.667 kcal (2) G-P(sol) polarization free energy of solvation -75.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds