Wall clock time and date at job start Tue Mar 31 2020 07:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46510 * 2 1 4 4 C 1.35794 * 116.99516 * 180.02562 * 3 2 1 5 5 C 1.38846 * 119.92452 * 359.97438 * 4 3 2 6 6 C 1.37768 * 120.15591 * 180.02562 * 5 4 3 7 7 C 1.39767 * 119.99860 * 0.02562 * 6 5 4 8 8 C 1.47467 * 120.07596 * 179.97438 * 7 6 5 9 9 O 1.21507 * 120.00154 * 179.97438 * 8 7 6 10 10 O 1.34752 * 120.00313 * 0.02562 * 8 7 6 11 11 C 1.45198 * 117.00139 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00420 * 17 15 13 20 20 H 1.48498 * 109.46942 * 240.00334 * 17 15 13 21 21 C 1.39786 * 119.84298 * 0.24677 * 7 6 5 22 22 C 1.38121 * 119.84935 * 359.49975 * 21 7 6 23 23 O 1.36004 * 120.00235 * 180.23214 * 22 21 7 24 24 C 1.42902 * 116.99854 * 0.27442 * 23 22 21 25 25 H 1.09001 * 109.46779 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46909 * 299.99146 * 1 2 3 27 27 H 1.08990 * 109.47522 * 59.99868 * 1 2 3 28 28 H 1.09001 * 109.46909 * 240.00853 * 2 1 3 29 29 H 1.08990 * 109.47522 * 120.00132 * 2 1 3 30 30 H 1.08001 * 119.92293 * 0.02562 * 5 4 3 31 31 H 1.08003 * 120.00083 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47379 * 59.99489 * 11 10 8 33 33 H 1.09001 * 109.46782 * 299.99572 * 11 10 8 34 34 H 1.09001 * 109.47194 * 299.99482 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99654 * 12 11 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.07485 * 179.75214 * 21 7 6 38 38 H 1.08999 * 109.46893 * 180.02562 * 24 23 22 39 39 H 1.09003 * 109.46805 * 300.00507 * 24 23 22 40 40 H 1.08997 * 109.47533 * 59.99859 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3525 1.5253 -0.0005 5 6 4.1968 0.4231 -0.0005 6 6 5.5633 0.5981 -0.0005 7 6 6.1027 1.8875 0.0000 8 6 7.5652 2.0768 0.0005 9 8 8.0326 3.1984 0.0005 10 8 8.3832 1.0060 0.0000 11 6 9.8115 1.2676 0.0012 12 6 10.5729 -0.0595 0.0011 13 6 12.0553 0.2120 0.0016 14 1 12.4179 1.2293 0.0025 15 6 12.9485 -0.8383 0.0022 16 7 12.5069 -2.0771 0.0016 17 14 14.7860 -0.5018 0.0022 18 1 15.0206 0.9645 0.0022 19 1 15.3989 -1.1008 1.2149 20 1 15.3990 -1.1017 -1.2101 21 6 5.2526 2.9971 0.0057 22 6 3.8835 2.8143 0.0004 23 8 3.0536 3.8917 0.0012 24 6 3.6663 5.1827 0.0016 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.7814 -0.5738 -0.0005 31 1 6.2178 -0.2610 -0.0001 32 1 10.0757 1.8377 0.8919 33 1 10.0768 1.8393 -0.8881 34 1 10.3075 -0.6308 0.8906 35 1 10.3087 -0.6299 -0.8893 36 1 13.1352 -2.8160 0.0024 37 1 5.6654 3.9952 0.0102 38 1 2.8938 5.9516 0.0026 39 1 4.2867 5.2901 0.8914 40 1 4.2860 5.2911 -0.8885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058857530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:30 Heat of formation + Delta-G solvation = -146.434726 kcal Electronic energy + Delta-G solvation = -22650.552078 eV Core-core repulsion = 19010.182996 eV Total energy + Delta-G solvation = -3640.369082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91526 -39.73834 -38.80196 -36.99155 -35.98091 -33.35424 -32.31028 -30.68011 -30.52044 -29.74781 -27.57220 -25.29913 -24.32168 -23.49958 -21.92217 -21.08189 -20.54766 -18.93593 -17.96604 -16.98726 -16.57736 -16.52764 -16.03917 -15.90875 -15.75253 -15.68023 -14.99769 -14.54182 -14.51970 -13.64087 -13.40663 -13.33175 -13.27615 -12.84078 -12.56004 -12.37639 -12.27202 -12.19454 -11.62663 -11.33770 -11.29685 -11.21543 -11.02129 -11.00690 -10.76854 -10.70294 -10.28285 -9.65509 -9.64277 -9.29479 -9.02151 -8.45620 -8.08602 -6.11535 -4.15642 0.65244 1.13728 2.70526 2.82345 2.99412 3.17015 3.26991 3.34669 3.40021 3.66936 4.38298 4.47737 4.58975 4.65764 4.77557 4.84907 4.89100 4.97214 5.00261 5.08746 5.12939 5.25311 5.26123 5.32873 5.43434 5.44648 5.68758 5.82770 6.03651 6.09166 6.10637 6.19174 6.33457 6.62985 6.77746 6.94416 7.28752 7.55013 7.61413 7.85824 8.17058 8.25106 8.90117 9.48846 11.00074 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.002738 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.254987 B =10222.388957 C =11324.290687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.302 6.302 4 C 0.134 3.866 5 C -0.190 4.190 6 C -0.050 4.050 7 C -0.120 4.120 8 C 0.504 3.496 9 O -0.518 6.518 10 O -0.351 6.351 11 C 0.076 3.924 12 C 0.024 3.976 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.112 4.112 22 C 0.083 3.917 23 O -0.306 6.306 24 C 0.023 3.977 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.263 0.737 37 H 0.150 0.850 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.051 6.270 0.003 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.215 6.215 4 C 0.087 3.913 5 C -0.208 4.208 6 C -0.069 4.069 7 C -0.121 4.121 8 C 0.349 3.651 9 O -0.409 6.409 10 O -0.267 6.267 11 C 0.003 3.997 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.131 4.131 22 C 0.038 3.962 23 O -0.220 6.220 24 C -0.072 4.072 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.167 0.833 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.176 6.539 0.003 25.045 hybrid contribution 1.504 0.104 0.002 1.508 sum -22.672 6.643 0.005 23.625 Atomic orbital electron populations 1.21764 0.92591 1.02868 1.03602 1.22885 0.96081 0.81828 1.01765 1.86134 1.18003 1.29313 1.88081 1.18493 0.83199 0.91131 0.98458 1.21076 0.93651 0.97757 1.08335 1.21320 0.94516 0.96974 0.94056 1.18918 0.90124 0.93915 1.09162 1.20933 0.87698 0.83331 0.73112 1.90788 1.77894 1.25599 1.46595 1.86570 1.21754 1.35739 1.82680 1.23679 0.72455 1.02472 1.01064 1.19179 0.93442 0.89753 0.98904 1.21019 0.90127 0.93193 1.52017 0.92184 1.24983 0.99373 0.94946 0.94876 1.69978 1.34723 0.98256 1.49912 0.86419 0.84684 0.78534 0.77702 1.19585 1.20828 1.20822 1.21129 0.90501 1.00183 1.01240 1.17949 0.88439 0.85675 1.04159 1.86165 1.33436 1.12997 1.89363 1.23117 0.99973 0.82343 1.01739 0.90281 0.91487 0.91480 0.91671 0.91670 0.83882 0.83321 0.92206 0.92199 0.95303 0.95303 0.92760 0.83282 0.88081 0.92439 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.37 5.46 37.16 0.20 0.57 16 3 O -0.30 -3.41 9.90 -33.76 -0.33 -3.75 16 4 C 0.13 1.63 6.71 -38.92 -0.26 1.37 16 5 C -0.19 -2.09 9.01 -39.53 -0.36 -2.45 16 6 C -0.05 -0.66 9.60 -39.18 -0.38 -1.03 16 7 C -0.12 -1.81 5.87 -104.99 -0.62 -2.43 16 8 C 0.50 9.37 7.89 34.49 0.27 9.65 16 9 O -0.52 -10.61 16.13 -19.27 -0.31 -10.92 16 10 O -0.35 -7.13 9.46 -40.63 -0.38 -7.52 16 11 C 0.08 1.70 5.41 37.16 0.20 1.90 16 12 C 0.02 0.63 5.35 -27.88 -0.15 0.49 16 13 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 17 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.11 -1.51 8.58 -39.05 -0.33 -1.85 16 22 C 0.08 1.07 6.69 -39.19 -0.26 0.81 16 23 O -0.31 -3.72 10.28 -34.42 -0.35 -4.07 16 24 C 0.02 0.20 9.81 101.05 0.99 1.19 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.42 7.65 -51.93 -0.40 0.02 16 29 H 0.07 0.42 7.65 -51.93 -0.40 0.02 16 30 H 0.14 1.16 6.27 -52.49 -0.33 0.83 16 31 H 0.15 1.88 7.60 -52.48 -0.40 1.48 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.15 1.91 5.87 -52.48 -0.31 1.60 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 40 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -32.85 346.69 -6.71 -39.56 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -5.55 Total: -3.59 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.72 Total: -5.74 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.74 Total: -25.55 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -1.38 Total: -26.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.85 -6.71 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058857530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.878 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds