Wall clock time and date at job start Tue Mar 31 2020 07:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46510 * 2 1 4 4 C 1.35794 * 116.99516 * 180.02562 * 3 2 1 5 5 C 1.38846 * 119.92452 * 359.97438 * 4 3 2 6 6 C 1.37768 * 120.15591 * 180.02562 * 5 4 3 7 7 C 1.39767 * 119.99860 * 0.02562 * 6 5 4 8 8 C 1.47467 * 120.07596 * 179.97438 * 7 6 5 9 9 O 1.21507 * 120.00154 * 179.97438 * 8 7 6 10 10 O 1.34752 * 120.00313 * 0.02562 * 8 7 6 11 11 C 1.45198 * 117.00139 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99955 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46999 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00420 * 17 15 13 20 20 H 1.48498 * 109.46942 * 240.00334 * 17 15 13 21 21 C 1.39786 * 119.84298 * 0.24677 * 7 6 5 22 22 C 1.38121 * 119.84935 * 359.49975 * 21 7 6 23 23 O 1.36004 * 120.00235 * 180.23214 * 22 21 7 24 24 C 1.42902 * 116.99854 * 0.27442 * 23 22 21 25 25 H 1.09001 * 109.46779 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46909 * 299.99146 * 1 2 3 27 27 H 1.08990 * 109.47522 * 59.99868 * 1 2 3 28 28 H 1.09001 * 109.46909 * 240.00853 * 2 1 3 29 29 H 1.08990 * 109.47522 * 120.00132 * 2 1 3 30 30 H 1.08001 * 119.92293 * 0.02562 * 5 4 3 31 31 H 1.08003 * 120.00083 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47379 * 59.99489 * 11 10 8 33 33 H 1.09001 * 109.46782 * 299.99572 * 11 10 8 34 34 H 1.09001 * 109.47194 * 299.99482 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99654 * 12 11 10 36 36 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.07485 * 179.75214 * 21 7 6 38 38 H 1.08999 * 109.46893 * 180.02562 * 24 23 22 39 39 H 1.09003 * 109.46805 * 300.00507 * 24 23 22 40 40 H 1.08997 * 109.47533 * 59.99859 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3525 1.5253 -0.0005 5 6 4.1968 0.4231 -0.0005 6 6 5.5633 0.5981 -0.0005 7 6 6.1027 1.8875 0.0000 8 6 7.5652 2.0768 0.0005 9 8 8.0326 3.1984 0.0005 10 8 8.3832 1.0060 0.0000 11 6 9.8115 1.2676 0.0012 12 6 10.5729 -0.0595 0.0011 13 6 12.0553 0.2120 0.0016 14 1 12.4179 1.2293 0.0025 15 6 12.9485 -0.8383 0.0022 16 7 12.5069 -2.0771 0.0016 17 14 14.7860 -0.5018 0.0022 18 1 15.0206 0.9645 0.0022 19 1 15.3989 -1.1008 1.2149 20 1 15.3990 -1.1017 -1.2101 21 6 5.2526 2.9971 0.0057 22 6 3.8835 2.8143 0.0004 23 8 3.0536 3.8917 0.0012 24 6 3.6663 5.1827 0.0016 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.7814 -0.5738 -0.0005 31 1 6.2178 -0.2610 -0.0001 32 1 10.0757 1.8377 0.8919 33 1 10.0768 1.8393 -0.8881 34 1 10.3075 -0.6308 0.8906 35 1 10.3087 -0.6299 -0.8893 36 1 13.1352 -2.8160 0.0024 37 1 5.6654 3.9952 0.0102 38 1 2.8938 5.9516 0.0026 39 1 4.2867 5.2901 0.8914 40 1 4.2860 5.2911 -0.8885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058857530.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:29 Heat of formation + Delta-G solvation = -165.164813 kcal Electronic energy + Delta-G solvation = -22651.364276 eV Core-core repulsion = 19010.182996 eV Total energy + Delta-G solvation = -3641.181279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.96029 -41.12865 -39.64571 -38.10308 -37.49296 -35.45067 -33.02084 -32.35725 -31.62305 -30.84638 -28.42325 -27.12200 -25.33986 -24.52012 -23.17407 -22.57770 -21.88306 -19.94342 -19.16002 -18.46948 -18.03871 -17.57924 -17.32509 -17.27680 -17.13284 -16.48447 -16.45781 -15.89067 -15.33092 -15.14941 -14.75262 -14.40399 -14.22925 -14.17668 -13.81945 -13.29591 -13.24885 -13.09677 -13.00214 -12.91665 -12.62558 -12.58919 -12.43277 -12.12515 -12.04138 -11.91199 -11.67108 -11.55415 -11.49936 -11.36959 -10.61854 -9.99074 -9.05146 -8.27415 -6.40238 -0.46310 0.16464 1.40319 1.40914 1.41698 1.54275 1.64550 2.07105 2.21814 2.40061 2.56848 3.07190 3.57941 3.62638 3.84191 3.92713 4.07181 4.10255 4.19449 4.21507 4.24333 4.34850 4.35353 4.40340 4.50775 4.65154 4.70314 4.79230 4.85802 4.98256 5.03143 5.15219 5.25019 5.27645 5.37819 5.46695 5.48919 5.73294 5.97181 6.06388 6.42395 6.65027 6.73669 7.29435 8.85454 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.002738 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.254987 B =10222.388957 C =11324.290687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.037 3.963 3 O -0.315 6.315 4 C 0.139 3.861 5 C -0.178 4.178 6 C -0.049 4.049 7 C -0.144 4.144 8 C 0.505 3.495 9 O -0.542 6.542 10 O -0.356 6.356 11 C 0.090 3.910 12 C 0.032 3.968 13 C -0.549 4.549 14 H 0.064 0.936 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.973 3.027 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.111 4.111 22 C 0.076 3.924 23 O -0.318 6.318 24 C 0.015 3.985 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.177 0.823 31 H 0.150 0.850 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.268 0.732 37 H 0.151 0.849 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.017 6.235 0.004 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.037 4.037 3 O -0.228 6.228 4 C 0.091 3.909 5 C -0.197 4.197 6 C -0.067 4.067 7 C -0.145 4.145 8 C 0.352 3.648 9 O -0.435 6.435 10 O -0.272 6.272 11 C 0.017 3.983 12 C -0.005 4.005 13 C -0.587 4.587 14 H 0.082 0.918 15 C -0.192 4.192 16 N -0.565 5.565 17 Si 0.797 3.203 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.130 4.130 22 C 0.030 3.970 23 O -0.232 6.232 24 C -0.079 4.079 25 H 0.120 0.880 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.194 0.806 31 H 0.168 0.832 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.077 0.923 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.173 6.511 0.004 26.002 hybrid contribution 1.585 0.104 0.002 1.589 sum -23.588 6.615 0.006 24.498 Atomic orbital electron populations 1.21803 0.91398 1.04252 1.03154 1.23267 0.97113 0.80252 1.03114 1.86144 1.17249 1.31883 1.87539 1.18694 0.83983 0.91138 0.97046 1.21326 0.92462 0.99055 1.06833 1.21400 0.95568 0.96096 0.93677 1.18783 0.87834 0.95475 1.12448 1.21527 0.88800 0.82455 0.72028 1.90763 1.78490 1.26219 1.48032 1.86550 1.20696 1.36754 1.83227 1.23227 0.73760 1.00178 1.01107 1.18982 0.93648 0.91038 0.96874 1.21397 0.91282 0.93641 1.52402 0.91760 1.25947 1.04607 0.94596 0.94095 1.70091 1.36698 0.99286 1.50445 0.85281 0.78228 0.78782 0.78041 1.18711 1.20026 1.20021 1.21101 0.90774 0.99856 1.01293 1.18081 0.88194 0.86571 1.04147 1.86154 1.33941 1.13903 1.89241 1.23383 1.01079 0.81389 1.02038 0.87964 0.91946 0.91938 0.90267 0.90267 0.80598 0.83180 0.92116 0.92112 0.97295 0.97298 0.92304 0.83126 0.85489 0.92141 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.04 0.45 5.46 71.98 0.39 0.84 16 3 O -0.31 -6.48 9.90 -77.22 -0.76 -7.24 16 4 C 0.14 3.14 6.71 22.70 0.15 3.29 16 5 C -0.18 -3.57 9.01 22.30 0.20 -3.37 16 6 C -0.05 -1.24 9.60 22.53 0.22 -1.02 16 7 C -0.14 -4.36 5.87 -20.10 -0.12 -4.48 16 8 C 0.50 19.10 7.89 70.25 0.55 19.66 16 9 O -0.54 -22.66 16.13 19.81 0.32 -22.34 16 10 O -0.36 -14.77 9.46 -56.62 -0.54 -15.31 16 11 C 0.09 4.15 5.41 71.98 0.39 4.54 16 12 C 0.03 1.71 5.35 29.85 0.16 1.87 16 13 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 14 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 15 C 0.01 0.37 5.46 84.66 0.46 0.84 16 16 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 17 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 C -0.11 -3.00 8.58 22.62 0.19 -2.81 16 22 C 0.08 1.89 6.69 22.53 0.15 2.04 16 23 O -0.32 -7.41 10.28 -79.58 -0.82 -8.23 16 24 C 0.02 0.24 9.81 113.37 1.11 1.36 16 25 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.76 7.65 -2.39 -0.02 0.74 16 29 H 0.08 0.76 7.65 -2.39 -0.02 0.74 16 30 H 0.18 2.26 6.27 -2.91 -0.02 2.25 16 31 H 0.15 3.71 7.60 -2.91 -0.02 3.69 16 32 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.15 3.89 5.87 -2.91 -0.02 3.87 16 38 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 0.92 7.65 -2.39 -0.02 0.90 16 40 H 0.06 0.92 7.67 -2.39 -0.02 0.90 16 Total: -1.00 -70.76 346.69 6.40 -64.37 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.04 Total: 6.91 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 4.84 Total: -8.88 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.28 Total: -54.95 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -1.80 Total: -53.12 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.76 6.40 -64.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058857530.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.797 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds