Wall clock time and date at job start Tue Mar 31 2020 07:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00448 * 2 1 4 4 C 1.52992 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47199 * 184.99948 * 4 3 2 6 6 C 1.53002 * 109.47328 * 304.99773 * 4 3 2 7 7 O 1.45204 * 109.47254 * 64.99749 * 4 3 2 8 8 C 1.34229 * 116.99680 * 150.00075 * 7 4 3 9 9 O 1.20828 * 120.00234 * 359.97438 * 8 7 4 10 10 C 1.50702 * 119.99692 * 180.02562 * 8 7 4 11 11 C 1.50701 * 109.47242 * 179.97438 * 10 8 7 12 12 C 1.38299 * 119.93217 * 269.72899 * 11 10 8 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31562 * 120.00282 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00220 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47275 * 89.99838 * 20 18 16 22 22 H 1.48495 * 109.47094 * 210.00170 * 20 18 16 23 23 H 1.48506 * 109.46791 * 330.00186 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.47809 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47499 * 300.00723 * 1 2 3 28 28 H 1.09001 * 109.47108 * 59.99952 * 1 2 3 29 29 H 1.08995 * 109.46783 * 59.99625 * 3 2 1 30 30 H 1.09001 * 109.46324 * 299.99839 * 3 2 1 31 31 H 1.09003 * 109.47029 * 300.00711 * 6 4 3 32 32 H 1.09003 * 109.47353 * 60.00050 * 6 4 3 33 33 H 1.08995 * 109.47665 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.47056 * 59.99464 * 10 8 7 35 35 H 1.09001 * 109.46884 * 299.99951 * 10 8 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.96996 * 120.00604 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.9785 2.1764 0.0902 6 6 3.9780 0.3197 1.1826 7 8 3.9728 0.5693 -1.2398 8 6 5.1841 0.9196 -1.6998 9 8 5.8565 1.7145 -1.0866 10 6 5.7049 0.3225 -2.9817 11 6 7.0753 0.8772 -3.2739 12 6 7.2074 2.0262 -4.0322 13 6 8.4615 2.5401 -4.2969 14 6 9.5914 1.8953 -3.8106 15 8 10.8259 2.3945 -4.0746 16 6 11.8719 1.7870 -3.4791 17 1 11.7152 0.8943 -2.8919 18 6 13.1489 2.3085 -3.6206 19 7 14.1695 1.7160 -3.0391 20 14 13.4201 3.8523 -4.6366 21 1 13.2975 5.0474 -3.7637 22 1 14.7769 3.8164 -5.2390 23 1 12.4013 3.9204 -5.7150 24 6 9.4557 0.7385 -3.0543 25 6 8.1985 0.2327 -2.7883 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8463 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.6497 0.7815 2.1138 32 1 3.5350 -0.6722 1.0932 33 1 5.0646 0.2339 1.1834 34 1 5.0297 0.5732 -3.7999 35 1 5.7653 -0.7610 -2.8795 36 1 6.3286 2.5243 -4.4143 37 1 8.5639 3.4399 -4.8854 38 1 15.0629 2.0806 -3.1383 39 1 10.3325 0.2346 -2.6751 40 1 8.0924 -0.6671 -2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073835815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:12 Heat of formation + Delta-G solvation = -136.027478 kcal Electronic energy + Delta-G solvation = -22742.640756 eV Core-core repulsion = 19102.722966 eV Total energy + Delta-G solvation = -3639.917790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55606 -39.16987 -38.31314 -36.99528 -36.13376 -32.80961 -32.44295 -31.49173 -30.25481 -27.71228 -27.17525 -26.05077 -25.03059 -22.58163 -22.08947 -20.86433 -20.08629 -17.91047 -17.81791 -17.29905 -16.67506 -16.64922 -16.14069 -15.81399 -15.05281 -14.80886 -14.66762 -14.08448 -13.82864 -13.69237 -13.58292 -13.33113 -13.02570 -12.71910 -12.60050 -12.38362 -12.20293 -12.15580 -11.80046 -11.60313 -11.32089 -11.22121 -10.96243 -10.77611 -10.68521 -10.61298 -10.24449 -10.15618 -10.04443 -9.38719 -8.86443 -8.25271 -7.34008 -6.41515 -4.07991 2.03877 2.14819 2.38308 2.82106 3.22606 3.26633 3.39105 3.40748 4.24040 4.43216 4.46100 4.65018 4.80306 4.84789 4.88300 4.98585 5.03136 5.03479 5.10880 5.14283 5.21952 5.29228 5.31800 5.57655 5.64447 5.66549 5.67114 5.74399 6.02757 6.12560 6.31504 6.47727 6.57646 6.76199 6.78344 7.01226 7.19808 7.29098 7.60189 7.80202 7.93614 8.03704 8.93544 9.55556 10.66003 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.038344 B = 0.002624 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.049092 B =10668.141947 C =10854.898561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.066 3.934 4 C 0.087 3.913 5 H 0.097 0.903 6 C -0.165 4.165 7 O -0.350 6.350 8 C 0.453 3.547 9 O -0.493 6.493 10 C -0.052 4.052 11 C -0.174 4.174 12 C -0.059 4.059 13 C -0.192 4.192 14 C 0.164 3.836 15 O -0.216 6.216 16 C -0.389 4.389 17 H 0.107 0.893 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.259 1.259 24 C -0.220 4.220 25 C -0.055 4.055 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.280 0.720 39 H 0.134 0.866 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.004 -2.393 4.117 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.011 4.011 4 C 0.032 3.968 5 H 0.115 0.885 6 C -0.223 4.223 7 O -0.268 6.268 8 C 0.296 3.704 9 O -0.379 6.379 10 C -0.090 4.090 11 C -0.174 4.174 12 C -0.077 4.077 13 C -0.211 4.211 14 C 0.112 3.888 15 O -0.121 6.121 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.183 1.183 24 C -0.239 4.239 25 C -0.073 4.073 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.152 0.848 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -24.364 -2.118 4.233 24.819 hybrid contribution 0.127 0.875 -0.075 0.888 sum -24.236 -1.242 4.158 24.622 Atomic orbital electron populations 1.22756 0.81077 1.02914 0.99893 1.87965 1.19501 1.26995 1.95363 1.22652 0.91644 0.85650 1.01177 1.22737 0.92591 0.98471 0.83011 0.88481 1.22085 1.02265 1.01397 0.96512 1.86656 1.35134 1.65398 1.39636 1.24196 0.79083 0.79789 0.87354 1.90694 1.56951 1.32150 1.58065 1.20111 0.95320 1.01516 0.92018 1.18721 0.92156 0.99806 1.06761 1.20421 0.95932 0.94395 0.96986 1.20151 0.90391 1.02556 1.07980 1.19139 0.85510 0.91733 0.92417 1.83570 1.11882 1.54077 1.62538 1.20781 0.83908 1.11005 1.30790 0.87567 1.24479 0.93864 0.98811 0.96883 1.69646 0.99698 1.40190 1.42102 0.86173 0.77731 0.82051 0.80898 1.19869 1.20771 1.18348 1.21230 0.97949 0.99068 1.05646 1.20599 0.91772 0.98180 0.96746 0.89496 0.94178 0.94006 0.91304 0.92305 0.91113 0.90661 0.91804 0.87756 0.87650 0.87032 0.86424 0.91032 0.84834 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.67 9.79 -38.80 -0.38 -4.05 16 3 C 0.07 0.56 5.82 37.15 0.22 0.77 16 4 C 0.09 0.94 2.97 -26.73 -0.08 0.86 16 5 H 0.10 1.09 7.16 -51.93 -0.37 0.72 16 6 C -0.17 -1.70 9.35 37.16 0.35 -1.35 16 7 O -0.35 -4.50 9.85 -42.02 -0.41 -4.91 16 8 C 0.45 6.54 7.92 36.01 0.29 6.82 16 9 O -0.49 -8.82 15.25 -18.75 -0.29 -9.10 16 10 C -0.05 -0.67 5.94 -29.03 -0.17 -0.84 16 11 C -0.17 -2.91 4.38 -104.57 -0.46 -3.37 16 12 C -0.06 -1.02 9.69 -39.61 -0.38 -1.41 16 13 C -0.19 -3.87 9.99 -39.40 -0.39 -4.27 16 14 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 15 O -0.22 -5.78 8.59 0.05 0.00 -5.78 16 16 C -0.39 -11.10 9.95 30.89 0.31 -10.79 16 17 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 18 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 19 N -0.88 -25.56 13.96 55.48 0.77 -24.79 16 20 Si 0.91 21.86 28.62 -169.99 -4.86 17.00 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.22 -4.85 9.17 -39.40 -0.36 -5.21 16 25 C -0.05 -1.01 9.69 -39.61 -0.38 -1.40 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.79 7.56 -51.93 -0.39 0.40 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.13 3.08 5.64 -52.49 -0.30 2.78 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 346.84 15.07 5.23 5.23 Total: -1.00 -32.65 346.84 -5.81 -38.46 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.55 Total: 1.51 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -0.32 Total: -13.57 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.77 Total: -24.79 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -1.08 Total: -23.84 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.65 -5.81 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073835815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.567 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds