Wall clock time and date at job start Tue Mar 31 2020 07:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00448 * 2 1 4 4 C 1.52992 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47199 * 184.99948 * 4 3 2 6 6 C 1.53002 * 109.47328 * 304.99773 * 4 3 2 7 7 O 1.45204 * 109.47254 * 64.99749 * 4 3 2 8 8 C 1.34229 * 116.99680 * 150.00075 * 7 4 3 9 9 O 1.20828 * 120.00234 * 359.97438 * 8 7 4 10 10 C 1.50702 * 119.99692 * 180.02562 * 8 7 4 11 11 C 1.50701 * 109.47242 * 179.97438 * 10 8 7 12 12 C 1.38299 * 119.93217 * 269.72899 * 11 10 8 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31562 * 120.00282 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00220 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47275 * 89.99838 * 20 18 16 22 22 H 1.48495 * 109.47094 * 210.00170 * 20 18 16 23 23 H 1.48506 * 109.46791 * 330.00186 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.47809 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47499 * 300.00723 * 1 2 3 28 28 H 1.09001 * 109.47108 * 59.99952 * 1 2 3 29 29 H 1.08995 * 109.46783 * 59.99625 * 3 2 1 30 30 H 1.09001 * 109.46324 * 299.99839 * 3 2 1 31 31 H 1.09003 * 109.47029 * 300.00711 * 6 4 3 32 32 H 1.09003 * 109.47353 * 60.00050 * 6 4 3 33 33 H 1.08995 * 109.47665 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.47056 * 59.99464 * 10 8 7 35 35 H 1.09001 * 109.46884 * 299.99951 * 10 8 7 36 36 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 37 37 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 38 38 H 0.96996 * 120.00604 * 179.97438 * 19 18 16 39 39 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 40 40 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.9785 2.1764 0.0902 6 6 3.9780 0.3197 1.1826 7 8 3.9728 0.5693 -1.2398 8 6 5.1841 0.9196 -1.6998 9 8 5.8565 1.7145 -1.0866 10 6 5.7049 0.3225 -2.9817 11 6 7.0753 0.8772 -3.2739 12 6 7.2074 2.0262 -4.0322 13 6 8.4615 2.5401 -4.2969 14 6 9.5914 1.8953 -3.8106 15 8 10.8259 2.3945 -4.0746 16 6 11.8719 1.7870 -3.4791 17 1 11.7152 0.8943 -2.8919 18 6 13.1489 2.3085 -3.6206 19 7 14.1695 1.7160 -3.0391 20 14 13.4201 3.8523 -4.6366 21 1 13.2975 5.0474 -3.7637 22 1 14.7769 3.8164 -5.2390 23 1 12.4013 3.9204 -5.7150 24 6 9.4557 0.7385 -3.0543 25 6 8.1985 0.2327 -2.7883 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6887 1.8463 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.6497 0.7815 2.1138 32 1 3.5350 -0.6722 1.0932 33 1 5.0646 0.2339 1.1834 34 1 5.0297 0.5732 -3.7999 35 1 5.7653 -0.7610 -2.8795 36 1 6.3286 2.5243 -4.4143 37 1 8.5639 3.4399 -4.8854 38 1 15.0629 2.0806 -3.1383 39 1 10.3325 0.2346 -2.6751 40 1 8.0924 -0.6671 -2.2005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073835815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:11 Heat of formation + Delta-G solvation = -156.102274 kcal Electronic energy + Delta-G solvation = -22743.511264 eV Core-core repulsion = 19102.722966 eV Total energy + Delta-G solvation = -3640.788298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67340 -40.82069 -39.13019 -38.45310 -37.30151 -34.54444 -33.68665 -32.81438 -31.83872 -28.68889 -28.32137 -26.97937 -26.59223 -23.80468 -23.61324 -22.06522 -21.31230 -19.83793 -19.13220 -18.84485 -17.63332 -17.41982 -17.05923 -16.64300 -16.60804 -16.09969 -15.87887 -15.66375 -15.64076 -15.20128 -14.58431 -14.42452 -14.36797 -14.14879 -14.04614 -13.73819 -13.23587 -13.04118 -12.95099 -12.83478 -12.55829 -12.45322 -12.38945 -12.31673 -12.00081 -11.93949 -11.60414 -11.36486 -11.29875 -10.90968 -10.61948 -9.81765 -9.04398 -8.51277 -6.24180 0.52458 0.56210 1.27839 1.30336 1.34685 1.51210 1.77539 2.27265 2.76336 2.80986 3.03169 3.15680 3.71247 3.73125 3.91438 3.97430 4.00391 4.13770 4.19457 4.38611 4.41192 4.51909 4.54238 4.58717 4.64825 4.66589 4.76989 4.80521 4.81486 4.92101 4.95581 5.19205 5.22525 5.34332 5.50899 5.53970 5.69370 5.77458 5.89173 6.21064 6.21777 6.82663 6.84789 7.56387 8.60352 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.038344 B = 0.002624 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.049092 B =10668.141947 C =10854.898561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.069 3.931 4 C 0.078 3.922 5 H 0.091 0.909 6 C -0.161 4.161 7 O -0.348 6.348 8 C 0.460 3.540 9 O -0.536 6.536 10 C -0.052 4.052 11 C -0.149 4.149 12 C -0.054 4.054 13 C -0.193 4.193 14 C 0.122 3.878 15 O -0.244 6.244 16 C -0.401 4.401 17 H 0.080 0.920 18 C 0.008 3.992 19 N -0.923 5.923 20 Si 0.973 3.027 21 H -0.267 1.267 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.239 4.239 25 C -0.061 4.061 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.157 0.843 37 H 0.131 0.869 38 H 0.285 0.715 39 H 0.108 0.892 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.982 -1.883 3.475 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.008 4.008 4 C 0.023 3.977 5 H 0.109 0.891 6 C -0.218 4.218 7 O -0.265 6.265 8 C 0.304 3.696 9 O -0.425 6.425 10 C -0.088 4.088 11 C -0.150 4.150 12 C -0.072 4.072 13 C -0.212 4.212 14 C 0.073 3.927 15 O -0.151 6.151 16 C -0.477 4.477 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.190 1.190 23 H -0.186 1.186 24 C -0.258 4.258 25 C -0.079 4.079 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.175 0.825 37 H 0.149 0.851 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.411 -1.637 3.593 28.684 hybrid contribution 0.933 0.566 0.230 1.115 sum -27.478 -1.071 3.823 27.763 Atomic orbital electron populations 1.22925 0.79400 1.03815 1.00949 1.87918 1.21375 1.27596 1.95611 1.22681 0.89670 0.85679 1.02754 1.23005 0.94432 0.98009 0.82226 0.89070 1.22055 1.00802 1.01489 0.97481 1.86644 1.34137 1.65258 1.40479 1.24349 0.79088 0.78835 0.87299 1.90703 1.58102 1.34239 1.59447 1.20250 0.93134 1.02846 0.92599 1.19236 0.93784 0.98428 1.03550 1.20968 0.96137 0.94188 0.95885 1.20515 0.90397 1.02839 1.07418 1.19711 0.85506 0.93066 0.94419 1.83512 1.12469 1.54985 1.64156 1.20711 0.85223 1.10685 1.31069 0.90267 1.25319 0.93425 1.02046 0.98210 1.69731 1.00272 1.42134 1.44221 0.85191 0.78095 0.78063 0.79186 1.19224 1.18991 1.18560 1.21247 0.98847 0.99304 1.06406 1.20926 0.90946 0.99206 0.96801 0.88791 0.92786 0.93255 0.88879 0.91546 0.89064 0.90914 0.93880 0.83751 0.84869 0.82528 0.85090 0.90532 0.87439 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.70 9.79 -145.57 -1.43 -8.13 16 3 C 0.07 0.96 5.82 71.98 0.42 1.38 16 4 C 0.08 1.52 2.97 30.59 0.09 1.61 16 5 H 0.09 1.90 7.16 -2.38 -0.02 1.88 16 6 C -0.16 -3.05 9.35 71.98 0.67 -2.38 16 7 O -0.35 -7.89 9.85 -48.76 -0.48 -8.37 16 8 C 0.46 11.80 7.92 71.24 0.56 12.36 16 9 O -0.54 -18.17 15.25 21.96 0.33 -17.83 16 10 C -0.05 -1.07 5.94 29.10 0.17 -0.89 16 11 C -0.15 -4.53 4.38 -19.83 -0.09 -4.61 16 12 C -0.05 -1.68 9.69 22.25 0.22 -1.47 16 13 C -0.19 -7.56 9.99 22.39 0.22 -7.34 16 14 C 0.12 5.92 6.65 22.58 0.15 6.07 16 15 O -0.24 -13.64 8.59 -22.74 -0.20 -13.83 16 16 C -0.40 -24.28 9.95 67.92 0.68 -23.60 16 17 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 18 C 0.01 0.49 5.49 84.83 0.47 0.96 16 19 N -0.92 -56.20 13.96 21.61 0.30 -55.90 16 20 Si 0.97 46.35 28.62 68.60 1.96 48.31 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 24 C -0.24 -10.96 9.17 22.39 0.21 -10.76 16 25 C -0.06 -2.19 9.69 22.25 0.22 -1.98 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.41 7.56 -2.39 -0.02 1.39 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.14 1.98 8.08 -2.39 -0.02 1.96 16 35 H 0.13 2.16 8.08 -2.39 -0.02 2.14 16 36 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 37 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 38 H 0.29 15.87 8.31 -92.71 -0.77 15.10 16 39 H 0.11 5.42 5.64 -2.91 -0.02 5.40 16 40 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -75.56 346.84 6.77 -68.79 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.04 Total: 16.14 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 5.23 Total: -29.17 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.30 Total: -55.90 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -1.77 Total: -48.17 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.96 Total: 48.31 kcal Total: -75.56 6.77 -68.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073835815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.315 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds