Wall clock time and date at job start Tue Mar 31 2020 07:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00088 * 2 1 4 4 C 1.50705 * 109.47121 * 293.95780 * 3 2 1 5 5 C 1.38227 * 119.98817 * 104.99904 * 4 3 2 6 6 C 1.38184 * 120.04980 * 180.25432 * 5 4 3 7 7 C 1.38494 * 120.02679 * 359.44927 * 6 5 4 8 8 F 1.35099 * 120.01375 * 180.28348 * 7 6 5 9 9 C 1.38400 * 119.97197 * 0.54938 * 7 6 5 10 10 C 1.38443 * 119.94799 * 359.72775 * 9 7 6 11 11 F 1.35102 * 120.00803 * 179.97438 * 10 9 7 12 12 C 1.46896 * 111.00182 * 123.96090 * 2 1 3 13 13 C 1.53002 * 109.47036 * 160.23842 * 12 2 1 14 14 H 1.08996 * 109.47323 * 55.41152 * 13 12 2 15 15 C 1.47197 * 109.46884 * 295.40789 * 13 12 2 16 16 N 3.65896 * 124.11202 * 202.98080 * 2 1 3 17 17 C 1.53005 * 109.46679 * 175.40992 * 13 12 2 18 18 C 1.50705 * 109.46935 * 184.99781 * 17 13 12 19 19 H 1.07997 * 119.99707 * 0.02562 * 18 17 13 20 20 C 1.37874 * 120.00298 * 180.02562 * 18 17 13 21 21 N 1.31517 * 119.99653 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00462 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46799 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47171 * 119.99961 * 22 20 18 25 25 H 1.48499 * 109.47294 * 240.00317 * 22 20 18 26 26 H 1.08995 * 109.47546 * 65.14732 * 1 2 3 27 27 H 1.09008 * 109.47139 * 185.14901 * 1 2 3 28 28 H 1.08998 * 109.46744 * 305.14615 * 1 2 3 29 29 H 1.09002 * 109.47262 * 173.95955 * 3 2 1 30 30 H 1.09003 * 109.46952 * 53.95704 * 3 2 1 31 31 H 1.08000 * 119.97231 * 359.97438 * 5 4 3 32 32 H 1.08009 * 119.98600 * 179.70448 * 6 5 4 33 33 H 1.07994 * 120.02481 * 179.74901 * 9 7 6 34 34 H 1.09004 * 109.46812 * 280.23572 * 12 2 1 35 35 H 1.09003 * 109.47556 * 40.23179 * 12 2 1 36 36 H 1.08996 * 109.47452 * 304.99391 * 17 13 12 37 37 H 1.09001 * 109.47301 * 64.99912 * 17 13 12 38 38 H 0.96997 * 119.99743 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2984 5 6 0.6297 2.9934 -1.3297 6 6 0.2963 3.6099 -2.5206 7 6 0.9787 3.2887 -3.6821 8 9 0.6564 3.8959 -4.8452 9 6 1.9873 2.3415 -3.6520 10 6 2.3166 1.7202 -2.4594 11 9 3.3006 0.7950 -2.4287 12 6 1.9955 -0.7661 1.1374 13 6 3.4456 -1.1648 0.8563 14 1 4.0308 -0.2729 0.6323 15 6 3.4881 -2.0815 -0.2946 16 7 3.5210 -2.7890 -1.1827 17 6 4.0301 -1.8627 2.0861 18 6 5.4923 -2.1455 1.8555 19 1 5.9581 -1.8561 0.9252 20 6 6.2354 -2.7738 2.8323 21 7 5.6680 -3.1267 3.9651 22 14 8.0476 -3.1251 2.5463 23 1 8.4409 -2.6329 1.2016 24 1 8.8555 -2.4327 3.5821 25 1 8.2871 -4.5884 2.6279 26 1 -0.3634 0.4319 -0.9324 27 1 -0.3634 -1.0236 0.0922 28 1 -0.3633 0.5916 0.8403 29 1 3.0797 1.3444 0.1081 30 1 1.5611 1.9273 0.8310 31 1 0.0999 3.2476 -0.4236 32 1 -0.4941 4.3457 -2.5448 33 1 2.5173 2.0874 -4.5580 34 1 1.9552 -0.1533 2.0380 35 1 1.3933 -1.6632 1.2813 36 1 3.9179 -1.2177 2.9576 37 1 3.5013 -2.8003 2.2575 38 1 6.1908 -3.5684 4.6524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073895118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:11 Heat of formation + Delta-G solvation = -60.895710 kcal Electronic energy + Delta-G solvation = -22965.334010 eV Core-core repulsion = 19249.879414 eV Total energy + Delta-G solvation = -3715.454596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.00593 -49.90631 -40.27382 -38.93163 -37.10064 -35.47238 -33.66424 -32.25064 -31.65501 -28.95329 -27.72611 -25.87338 -24.13623 -23.64677 -23.28365 -21.91054 -19.15502 -18.54052 -18.33864 -18.09529 -17.11425 -16.95557 -16.73094 -16.43907 -16.35140 -15.99447 -15.74192 -15.47303 -15.18645 -14.76430 -14.51249 -14.37934 -14.22995 -13.73549 -13.64800 -13.24140 -13.02956 -12.98242 -12.86817 -12.67779 -12.64302 -12.47209 -12.40660 -12.29313 -12.20566 -11.77398 -11.36367 -11.09906 -10.54623 -10.04328 -9.61129 -9.18074 -8.19234 -6.26636 -0.05203 0.05814 1.38250 1.41715 1.52144 2.11206 2.18801 2.34344 2.42050 2.91889 3.08763 3.16433 3.40260 3.49244 3.63561 3.66771 3.94489 4.14818 4.18274 4.36842 4.41998 4.51982 4.71199 4.78421 4.81613 4.86176 4.90262 4.96159 4.99406 5.03446 5.09823 5.12607 5.27574 5.48178 5.63858 5.79922 5.80578 6.06477 6.19144 6.24757 6.84714 6.97658 7.41742 8.91729 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.003543 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.396572 B = 7900.231627 C = 8373.523773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.562 5.562 3 C 0.089 3.911 4 C -0.123 4.123 5 C -0.044 4.044 6 C -0.154 4.154 7 C 0.116 3.884 8 F -0.139 7.139 9 C -0.208 4.208 10 C 0.126 3.874 11 F -0.143 7.143 12 C 0.074 3.926 13 C 0.021 3.979 14 H 0.108 0.892 15 C 0.268 3.732 16 N -0.519 5.519 17 C 0.039 3.961 18 C -0.538 4.538 19 H 0.049 0.951 20 C 0.014 3.986 21 N -0.921 5.921 22 Si 0.945 3.055 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.285 1.285 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.178 0.822 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.002 0.998 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.515 17.721 -7.462 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.287 5.287 3 C -0.037 4.037 4 C -0.125 4.125 5 C -0.062 4.062 6 C -0.172 4.172 7 C 0.096 3.904 8 F -0.118 7.118 9 C -0.228 4.228 10 C 0.106 3.894 11 F -0.121 7.121 12 C -0.055 4.055 13 C -0.001 4.001 14 H 0.126 0.874 15 C -0.048 4.048 16 N -0.197 5.197 17 C 0.000 4.000 18 C -0.576 4.576 19 H 0.067 0.933 20 C -0.185 4.185 21 N -0.561 5.561 22 Si 0.771 3.229 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.211 1.211 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.195 0.805 32 H 0.189 0.811 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.021 0.979 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.251 16.325 -9.111 23.508 hybrid contribution 1.319 -0.255 0.435 1.412 sum -12.932 16.070 -8.675 22.378 Atomic orbital electron populations 1.22402 0.85526 1.02205 1.01784 1.61859 1.09481 1.13321 1.43998 1.21110 1.01241 0.87980 0.93416 1.20081 0.98356 0.99770 0.94292 1.21163 0.93647 0.92288 0.99091 1.21490 1.02088 1.03175 0.90469 1.17475 0.96255 0.94142 0.82532 1.91511 1.91760 1.81507 1.47030 1.21122 1.01914 1.00801 0.98922 1.17508 0.88410 0.89079 0.94402 1.91548 1.59659 1.63767 1.97167 1.22085 0.92316 0.98654 0.92404 1.19214 0.98573 0.94525 0.87824 0.87396 1.29377 0.90032 0.92440 0.92963 1.80955 1.11845 1.12829 1.14030 1.18995 0.93938 0.95338 0.91707 1.21566 0.96302 1.38451 1.01294 0.93296 1.25657 1.02262 0.95521 0.95081 1.70024 1.37602 1.41634 1.06870 0.85694 0.81095 0.77753 0.78343 1.19735 1.19587 1.21074 0.91347 0.92012 0.92848 0.90341 0.89705 0.80512 0.81147 0.83859 0.90038 0.90285 0.94266 0.97928 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.27 127.69 1.18 1.69 16 2 N -0.56 -13.42 4.37 -927.04 -4.05 -17.47 16 3 C 0.09 1.77 4.60 85.56 0.39 2.17 16 4 C -0.12 -2.37 4.44 -19.82 -0.09 -2.45 16 5 C -0.04 -0.53 9.28 22.25 0.21 -0.32 16 6 C -0.15 -1.94 10.02 22.32 0.22 -1.71 16 7 C 0.12 2.11 7.30 22.37 0.16 2.27 16 8 F -0.14 -2.71 17.27 44.97 0.78 -1.93 16 9 C -0.21 -4.55 10.01 22.36 0.22 -4.33 16 10 C 0.13 3.12 7.24 22.37 0.16 3.28 16 11 F -0.14 -4.61 16.75 44.97 0.75 -3.86 16 12 C 0.07 2.00 4.37 86.30 0.38 2.37 16 13 C 0.02 0.75 2.27 -12.60 -0.03 0.73 16 14 H 0.11 3.76 6.67 -2.39 -0.02 3.75 16 15 C 0.27 11.58 13.66 89.44 1.22 12.80 16 16 N -0.52 -24.66 18.54 20.00 0.37 -24.29 16 17 C 0.04 1.79 4.42 29.85 0.13 1.92 16 18 C -0.54 -28.86 8.60 25.60 0.22 -28.64 16 19 H 0.05 2.65 7.59 -2.91 -0.02 2.63 16 20 C 0.01 0.76 5.46 84.65 0.46 1.22 16 21 N -0.92 -52.67 13.29 21.45 0.28 -52.38 16 22 Si 0.95 43.90 29.54 68.60 2.03 45.92 16 23 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 26 H 0.07 1.18 7.19 -2.39 -0.02 1.16 16 27 H 0.06 1.19 7.85 -2.38 -0.02 1.17 16 28 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 29 H 0.08 1.82 6.51 -2.39 -0.02 1.81 16 30 H 0.09 1.15 7.88 -2.39 -0.02 1.13 16 31 H 0.18 0.90 8.00 -2.91 -0.02 0.88 16 32 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.08 1.83 8.00 -2.38 -0.02 1.81 16 35 H 0.08 2.17 7.75 -2.39 -0.02 2.15 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -68.07 338.24 6.09 -61.98 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: 1.08 Total: 1.02 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 4.85 Total: -9.00 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -3.40 Total: -94.14 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.53 Total: -5.79 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.07 6.09 -61.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073895118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.088 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds