Wall clock time and date at job start Tue Mar 31 2020 07:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00218 * 2 1 4 4 C 1.50705 * 109.47183 * 293.95096 * 3 2 1 5 5 C 1.38226 * 119.98689 * 104.99399 * 4 3 2 6 6 C 1.38185 * 120.04888 * 179.70234 * 5 4 3 7 7 C 1.38503 * 120.02702 * 0.28222 * 6 5 4 8 8 F 1.35092 * 120.01297 * 179.97438 * 7 6 5 9 9 C 1.38398 * 119.97068 * 359.97438 * 7 6 5 10 10 C 1.38445 * 119.95077 * 359.97438 * 9 7 6 11 11 F 1.35095 * 120.01243 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99360 * 123.94858 * 2 1 3 13 13 C 1.53000 * 109.46988 * 66.05127 * 12 2 1 14 14 H 1.09003 * 109.47109 * 304.99092 * 13 12 2 15 15 C 1.47202 * 109.47427 * 64.99561 * 13 12 2 16 16 N 3.66498 * 112.02679 * 199.40552 * 2 1 3 17 17 C 1.53003 * 109.47065 * 184.99866 * 13 12 2 18 18 C 1.50704 * 109.47089 * 175.00049 * 17 13 12 19 19 H 1.07999 * 120.00284 * 359.97438 * 18 17 13 20 20 C 1.37876 * 119.99906 * 179.97438 * 18 17 13 21 21 N 1.31523 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00056 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46658 * 60.00171 * 22 20 18 24 24 H 1.48503 * 109.47187 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46922 * 300.00095 * 22 20 18 26 26 H 1.09007 * 109.46562 * 60.00287 * 1 2 3 27 27 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47358 * 300.00529 * 1 2 3 29 29 H 1.08999 * 109.47218 * 173.94912 * 3 2 1 30 30 H 1.09004 * 109.47455 * 53.94759 * 3 2 1 31 31 H 1.08002 * 119.97943 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.99091 * 180.30236 * 6 5 4 33 33 H 1.08002 * 120.02147 * 179.97438 * 9 7 6 34 34 H 1.09006 * 109.46996 * 186.04417 * 12 2 1 35 35 H 1.08992 * 109.47707 * 306.04464 * 12 2 1 36 36 H 1.09000 * 109.46663 * 294.99436 * 17 13 12 37 37 H 1.08997 * 109.47378 * 54.99402 * 17 13 12 38 38 H 0.96995 * 119.99772 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 6 0.6299 2.9932 -1.3299 6 6 0.3043 3.6181 -2.5187 7 6 0.9831 3.2926 -3.6813 8 9 0.6642 3.9033 -4.8434 9 6 1.9881 2.3416 -3.6520 10 6 2.3141 1.7170 -2.4602 11 9 3.2953 0.7889 -2.4301 12 6 1.9953 -0.7659 1.1377 13 6 1.6313 -2.2426 0.9705 14 1 0.5530 -2.3388 0.8434 15 6 2.3155 -2.7855 -0.2144 16 7 2.8435 -3.2045 -1.1288 17 6 2.0697 -3.0198 2.2134 18 6 1.6028 -4.4484 2.1030 19 1 1.0486 -4.7698 1.2336 20 6 1.8834 -5.3452 3.1120 21 7 2.5588 -4.9540 4.1705 22 14 1.3041 -7.1159 2.9755 23 1 1.8986 -7.7393 1.7660 24 1 1.7307 -7.8706 4.1812 25 1 -0.1769 -7.1455 2.8707 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.0797 1.3443 0.1083 30 1 1.5611 1.9274 0.8309 31 1 0.0999 3.2476 -0.4239 32 1 -0.4795 4.3608 -2.5412 33 1 2.5176 2.0869 -4.5581 34 1 3.0797 -0.6611 1.1758 35 1 1.5610 -0.3872 2.0628 36 1 3.1567 -2.9978 2.2909 37 1 1.6328 -2.5622 3.1009 38 1 2.7558 -5.5849 4.8805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073895119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:14 Heat of formation + Delta-G solvation = -43.125885 kcal Electronic energy + Delta-G solvation = -22703.633218 eV Core-core repulsion = 18988.949179 eV Total energy + Delta-G solvation = -3714.684039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 294.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.26636 -48.97619 -39.48376 -37.83586 -35.64834 -33.65120 -32.25328 -31.15628 -30.73019 -27.40304 -26.97355 -24.59587 -23.43354 -22.35455 -21.63802 -21.03821 -18.37513 -17.41944 -16.80820 -16.61390 -16.18096 -16.15804 -15.64351 -15.56276 -15.16206 -14.86711 -14.58769 -14.44681 -14.30074 -13.80913 -13.26095 -12.92562 -12.82705 -12.40673 -12.20306 -12.14226 -11.90683 -11.75513 -11.55734 -11.54529 -11.42760 -11.18399 -11.03319 -10.66534 -10.54728 -10.14938 -9.55657 -9.33586 -9.24966 -8.85857 -8.45700 -8.27536 -6.09892 -4.13022 0.66564 0.75901 3.04874 3.31064 3.35366 3.39327 3.64939 3.77039 3.87510 4.01822 4.20783 4.31961 4.41108 4.41564 4.58288 4.84674 4.92629 5.14918 5.26850 5.28320 5.39718 5.47514 5.54244 5.56473 5.70080 5.71206 5.73357 5.78398 5.95900 5.97155 6.04519 6.35813 6.48992 6.50930 7.04350 7.09809 7.41416 7.52599 7.85287 8.22942 8.62961 8.91529 9.52446 11.00987 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.032135 B = 0.003071 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.107680 B = 9116.726901 C = 9365.561819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.541 5.541 3 C 0.095 3.905 4 C -0.122 4.122 5 C -0.056 4.056 6 C -0.168 4.168 7 C 0.126 3.874 8 F -0.135 7.135 9 C -0.198 4.198 10 C 0.158 3.842 11 F -0.117 7.117 12 C 0.063 3.937 13 C 0.011 3.989 14 H 0.100 0.900 15 C 0.254 3.746 16 N -0.477 5.477 17 C 0.032 3.968 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 20.368 -8.681 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.265 5.265 3 C -0.032 4.032 4 C -0.124 4.124 5 C -0.075 4.075 6 C -0.187 4.187 7 C 0.107 3.893 8 F -0.113 7.113 9 C -0.218 4.218 10 C 0.138 3.862 11 F -0.095 7.095 12 C -0.065 4.065 13 C -0.011 4.011 14 H 0.118 0.882 15 C -0.063 4.063 16 N -0.153 5.153 17 C -0.006 4.006 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.139 4.139 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.042 19.417 -10.352 22.372 hybrid contribution -0.652 -0.588 0.767 1.166 sum -4.694 18.828 -9.586 21.643 Atomic orbital electron populations 1.22498 0.87199 1.02965 1.00327 1.62030 1.08265 1.11696 1.44471 1.20952 1.01240 0.88864 0.92165 1.19980 0.97919 0.99193 0.95262 1.20815 0.94858 0.93920 0.97886 1.21138 1.02550 1.03520 0.91512 1.17303 0.96099 0.94017 0.81927 1.91522 1.91819 1.81334 1.46630 1.21071 1.01313 1.00184 0.99200 1.17133 0.87857 0.88192 0.92987 1.91601 1.58544 1.62382 1.96985 1.22263 1.00871 0.92387 0.90998 1.19248 0.99224 0.92364 0.90296 0.88194 1.28816 0.92835 0.91581 0.93068 1.80983 1.10499 1.10854 1.13010 1.19164 0.97734 0.94360 0.89384 1.21102 1.36058 0.94518 1.04781 0.92562 1.24947 0.94918 0.98810 0.95246 1.69929 1.39379 1.35389 1.08379 0.86655 0.79236 0.84679 0.77527 1.20200 1.21194 1.20058 0.91805 0.90463 0.95171 0.89341 0.92946 0.84056 0.84149 0.83566 0.90111 0.92585 0.95552 0.94487 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.15 60.07 0.55 0.75 16 2 N -0.54 -7.01 4.45 -244.37 -1.09 -8.10 16 3 C 0.10 1.00 4.77 -4.98 -0.02 0.98 16 4 C -0.12 -1.24 4.43 -104.55 -0.46 -1.70 16 5 C -0.06 -0.44 9.12 -39.61 -0.36 -0.80 16 6 C -0.17 -1.32 10.03 -39.50 -0.40 -1.72 16 7 C 0.13 1.21 7.30 -39.42 -0.29 0.92 16 8 F -0.13 -1.35 17.27 2.25 0.04 -1.32 16 9 C -0.20 -2.07 10.01 -39.45 -0.39 -2.46 16 10 C 0.16 1.87 7.24 -39.43 -0.29 1.59 16 11 F -0.12 -1.70 16.76 2.25 0.04 -1.66 16 12 C 0.06 0.91 4.32 -3.82 -0.02 0.89 16 13 C 0.01 0.19 2.14 -93.40 -0.20 -0.01 16 14 H 0.10 1.71 6.26 -51.93 -0.33 1.39 16 15 C 0.25 5.39 13.67 -20.76 -0.28 5.10 16 16 N -0.48 -11.07 18.54 42.15 0.78 -10.29 16 17 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 18 C -0.53 -13.97 8.60 -34.44 -0.30 -14.26 16 19 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 22 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H 0.06 0.67 6.88 -51.93 -0.36 0.31 16 27 H 0.08 0.94 6.21 -51.93 -0.32 0.62 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.96 7.87 -51.93 -0.41 0.56 16 30 H 0.05 0.45 7.93 -51.93 -0.41 0.03 16 31 H 0.14 0.76 8.00 -52.49 -0.42 0.34 16 32 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -30.92 337.46 -6.83 -37.76 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.73 Total: -4.58 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -2.68 Total: -8.47 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.43 Total: -43.07 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.92 -6.83 -37.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073895119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.370 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds